View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14041_high_5 (Length: 491)
Name: NF14041_high_5
Description: NF14041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14041_high_5 |
 | |
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| [»] chr5 (13 HSPs) |
| |
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Alignment Details
Target: chr5 (Bit Score: 455; Significance: 0; HSPs: 13)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 1 - 491
Target Start/End: Original strand, 27929533 - 27930023
Alignment:
| Q |
1 |
ttgtccaactttgtaagtggttttcatggtcgaattttttccaattattttattcctcaccatatatatcttttaagttatattatttcaattggtagta |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
27929533 |
ttgtccaactttgtaagtggttttcatggtcgaattttttccaattattttattcctcaccatatatattttttaagttatattatttcaattggtagta |
27929632 |
T |
|
| Q |
101 |
actccctagtgattcatatggttgcttatatggatttaacctgacatatgttgaatttttctagctcaatgtggattggtttccacctgcggatgcttat |
200 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27929633 |
actccctagtgattcatatagttgcttatatggatttaacatgacatatgttgaatttttctagctcaatgtggattggtttccacctgcggatgcttat |
27929732 |
T |
|
| Q |
201 |
ctcaagcgaccacgtatccataagttaatatttgaactggtggaaaaccatggttcacatgaaggcttttcccctgacgatgatgataaccagcactgct |
300 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
27929733 |
ctcaagcgaacacgtatccataagttaatatttgaactggtggaaaaccatggttcacatgaaggcttttcccctgacgatggtgataaccagcactgct |
27929832 |
T |
|
| Q |
301 |
cagaatatattgacaacagcagtattggtggtcagtgtcatttattcaacggggaggcatcgacttcccaacctggccagggaatagaaatgtttccatc |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |
|
|
| T |
27929833 |
cagaatatattgacaacagcagtattggtggtcagtgtcatttattcaacggggaggcatcgacttcccatcctggccagagaatagaaatgtttccatc |
27929932 |
T |
|
| Q |
401 |
ttacaatacatctaatatggttcttaagcagcattttgaaccagtagctgcatcgggaacttcactgagacattgtcaatcttttgaccag |
491 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
27929933 |
ttacaatacatctaatatggttcttaagcagcattttgaaccaggagctgcatcgggaacgtcactgagacattgtcaatcttttgaccag |
27930023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 4 - 491
Target Start/End: Complemental strand, 28082301 - 28081818
Alignment:
| Q |
4 |
tccaactttgtaagtggttttcatggtcgaattttttccaattattttattcctcaccatatatatcttttaagttatattatttcaattggtagtaact |
103 |
Q |
| |
|
||||||||||||||||||||||||||| | ||||||||||||||||| |||||||| | ||||| ||| ||||||||||||||||||||| ||||||| |
|
|
| T |
28082301 |
tccaactttgtaagtggttttcatggttaacttttttccaattattttgttcctcact-tgtatatttttaaagttatattatttcaattggcagtaact |
28082203 |
T |
|
| Q |
104 |
ccctagtgattcatatggttgcttatatggatttaacctgacatatgttgaatttttctagctcaatgtggattggtttccacctgcggatgcttatctc |
203 |
Q |
| |
|
|||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| ||| || |||||||||||| |||||||||||||| |
|
|
| T |
28082202 |
ccctagtgattcatatggctgcttaaatggatttaacctgacatatgttgaatttttctagctcattgtagactggtttccacctacggatgcttatctc |
28082103 |
T |
|
| Q |
204 |
aagcgaccacgtatccataagttaatatttgaactggtggaaaaccatggttcacatgaaggcttttcccctgacgatgatgataaccagcactgctcag |
303 |
Q |
| |
|
|||| | ||| |||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |||||||||| ||||||||| |||| ||||| |
|
|
| T |
28082102 |
aagcaaacacatatccataagttaatatttgaactggcggaaaaccatggttcacacgaaggcttttctcctgacgatggtgataaccaccactactcag |
28082003 |
T |
|
| Q |
304 |
aatatattgacaacagcagtattggtggtcagtgtcatttattcaacggggaggcatcgacttcccaacctggccagggaatagaaatgtttccatctta |
403 |
Q |
| |
|
||||||||||||||| ||| |||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
28082002 |
aatatattgacaacaacaggattggtggtcagtgtcatttattcaacgtggaggcatcgacttccca---tggccagggaatagaaatgtttccatctta |
28081906 |
T |
|
| Q |
404 |
caatacatctaatatggttcttaagcagcattttgaaccagtagctgcatcgggaacttcactgagacattgtcaatcttttgaccag |
491 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
28081905 |
caatacatctaatatggttcttaagaagcattttgaaccaggagctgcatcaggaacttcactgagacattgtcaatcttttgaccag |
28081818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 324 - 491
Target Start/End: Original strand, 27930468 - 27930635
Alignment:
| Q |
324 |
attggtggtcagtgtcatttattcaacggggaggcatcgacttcccaacctggccagggaatagaaatgtttccatcttacaatacatctaatatggttc |
423 |
Q |
| |
|
||||||||||| | |||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27930468 |
attggtggtcaatctcatttattcaacgaggaggcatcgacttcccatcctggccagggaatagaaatgtttccatcttacaatacatctaatatggttc |
27930567 |
T |
|
| Q |
424 |
ttaagcagcattttgaaccagtagctgcatcgggaacttcactgagacattgtcaatcttttgaccag |
491 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27930568 |
ttaagcagcattttgaaccaggagctgcatcgggaacttcactgagacattgtcaatcttttgaccag |
27930635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 324 - 491
Target Start/End: Original strand, 27930264 - 27930431
Alignment:
| Q |
324 |
attggtggtcagtgtcatttattcaacggggaggcatcgacttcccaacctggccagggaatagaaatgtttccatcttacaatacatctaatatggttc |
423 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
27930264 |
attggtggtcagcgtcatttattcaacagggaggcatcgacttcccattctggccagggaatagaaatgtttccatcttacaatacaactaatatggttc |
27930363 |
T |
|
| Q |
424 |
ttaagcagcattttgaaccagtagctgcatcgggaacttcactgagacattgtcaatcttttgaccag |
491 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27930364 |
ttaagcagcattttgaaccaggagctgcatcgggaacttcactgagacattgtcaatcttttgaccag |
27930431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 324 - 490
Target Start/End: Original strand, 27930672 - 27930838
Alignment:
| Q |
324 |
attggtggtcagtgtcatttattcaacggggaggcatcgacttcccaacctggccagggaatagaaatgtttccatcttacaatacatctaatatggttc |
423 |
Q |
| |
|
||||||||||| | |||||||||||||| |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27930672 |
attggtggtcaatctcatttattcaacgaggaggcattgacttcccatcctggccagggaatagaaatgtttccatcttacaatacatctaatatggttc |
27930771 |
T |
|
| Q |
424 |
ttaagcagcattttgaaccagtagctgcatcgggaacttcactgagacattgtcaatcttttgacca |
490 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27930772 |
ttaagcagcattttgaaccaggagctgcatcgggaacttcactgagacattgtcaatcttttgacca |
27930838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 85 - 487
Target Start/End: Original strand, 27935698 - 27936090
Alignment:
| Q |
85 |
atttcaattggtagtaactccctagtgattcatatggttgcttatatggatttaacctgacatatgttgaatttttctagctcaatgtggattggtttcc |
184 |
Q |
| |
|
|||||||| |||||||||||||||| |||||||| ||| ||||||| || |||| |||||| ||| ||||||||||||||||||||| |||||||| |
|
|
| T |
27935698 |
atttcaataagtagtaactccctagtcattcatatagtttcttatat----ttgacctaacatattttgtatttttctagctcaatgtggactggtttcc |
27935793 |
T |
|
| Q |
185 |
acctgcggatgcttatctcaagcgaccacgtatccataagttaatatttgaactggtggaaaaccatggttcacatgaaggcttttcccctgacgatgat |
284 |
Q |
| |
|
||||||||| || ||| |||| ||| ||| |||||||| ||||||| |||| |||||| ||||||||| || ||||||||||||||| |||| ||| | |
|
|
| T |
27935794 |
acctgcggaggcgtatttcaaacgaacacttatccataggttaatagttgagctggtgaaaaaccatga--ca-atgaaggcttttcccatgacaatgtt |
27935890 |
T |
|
| Q |
285 |
gataaccagcactgctcagaatatattgacaacagcagtattggtggtcagtgtcatttattcaacggggaggcatcgacttcccaacctggccagggaa |
384 |
Q |
| |
|
||| ||| |||| ||||||||||| ||||||| || |||||||| |||||||||||| |||||||||||||||| || ||||| |||||| ||||| |
|
|
| T |
27935891 |
gatgaccgccactcctcagaatataaggacaaca--ag-attggtggccagtgtcatttaatcaacggggaggcatcaacatcccatgctggccggggaa |
27935987 |
T |
|
| Q |
385 |
tagaaatgtttccatcttacaatacatctaatatggttcttaagcagcattttgaaccagtagctgcatcgggaacttcactgagacattgtcaatcttt |
484 |
Q |
| |
|
|||||||| |||||||| |||| |||| ||||| |||||| | ||||||||||||| |||| ||| ||||||||||||||||||||| |||||||| |
|
|
| T |
27935988 |
tagaaatggctccatcttttgatacttctagtatggctcttaaagatcattttgaaccagaagctacattgggaacttcactgagacattgccaatcttt |
27936087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 324 - 491
Target Start/End: Complemental strand, 28081373 - 28081206
Alignment:
| Q |
324 |
attggtggtcagtgtcatttattcaacggggaggcatcgacttcccaacctggccagggaatagaaatgtttccatcttacaatacatctaatatggttc |
423 |
Q |
| |
|
||||||||||| | |||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
28081373 |
attggtggtcaatctcatttattcaacgaggaggcatcgacttcccattctggccagggaatagaaatgtttccatcttacaatacttctaatatggttc |
28081274 |
T |
|
| Q |
424 |
ttaagcagcattttgaaccagtagctgcatcgggaacttcactgagacattgtcaatcttttgaccag |
491 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28081273 |
ttaagcagcattttgaaccaggagctgcatcgggaacttcactgagacattgtcaatcttttgaccag |
28081206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 324 - 491
Target Start/End: Complemental strand, 28081577 - 28081410
Alignment:
| Q |
324 |
attggtggtcagtgtcatttattcaacggggaggcatcgacttcccaacctggccagggaatagaaatgtttccatcttacaatacatctaatatggttc |
423 |
Q |
| |
|
||||||||||| | |||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
28081577 |
attggtggtcaatctcatttattcaacgaggaggcatcgacttcccattctggccagggaatagaaatgtttccatcttacaatacttctaatatggttc |
28081478 |
T |
|
| Q |
424 |
ttaagcagcattttgaaccagtagctgcatcgggaacttcactgagacattgtcaatcttttgaccag |
491 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28081477 |
ttaagcagcattttgaaccaggagctgcatcgggaacttcactgagacattgtcaatcttttgaccag |
28081410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 324 - 491
Target Start/End: Complemental strand, 28081781 - 28081614
Alignment:
| Q |
324 |
attggtggtcagtgtcatttattcaacggggaggcatcgacttcccaacctggccagggaatagaaatgtttccatcttacaatacatctaatatggttc |
423 |
Q |
| |
|
||||||||||| | |||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
28081781 |
attggtggtcaatctcatttattcaacgaggaggcatcgacttcccattctggccagggaatagaaatgtttccatcttacaatacttctaatatggttc |
28081682 |
T |
|
| Q |
424 |
ttaagcagcattttgaaccagtagctgcatcgggaacttcactgagacattgtcaatcttttgaccag |
491 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28081681 |
ttaagcagcattttgaaccaggagctgcatcgggaacttcactgagacattgtcaatcttttgaccag |
28081614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 324 - 491
Target Start/End: Original strand, 27930060 - 27930227
Alignment:
| Q |
324 |
attggtggtcagtgtcatttattcaacggggaggcatcgacttcccaacctggccagggaatagaaatgtttccatcttacaatacatctaatatggttc |
423 |
Q |
| |
|
||||||||||| | ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
27930060 |
attggtggtcaatctcatttattcaacggggaggcatcgacttcccattctggccagggaatagaaatgtttccatcttacaatacatctaacatggttc |
27930159 |
T |
|
| Q |
424 |
ttaagcagcattttgaaccagtagctgcatcgggaacttcactgagacattgtcaatcttttgaccag |
491 |
Q |
| |
|
||||||||||||||||||||| |||||||||| ||||||||||||||||||| ||||||||||||||| |
|
|
| T |
27930160 |
ttaagcagcattttgaaccaggagctgcatcgcgaacttcactgagacattgccaatcttttgaccag |
27930227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 324 - 487
Target Start/End: Complemental strand, 28081169 - 28081006
Alignment:
| Q |
324 |
attggtggtcagtgtcatttattcaacggggaggcatcgacttcccaacctggccagggaatagaaatgtttccatcttacaatacatctaatatggttc |
423 |
Q |
| |
|
||||||||||| | |||||||||||||| |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
28081169 |
attggtggtcaatctcatttattcaacgaggagacatcgacttcccattctggccagggaatagaaatgtttccatcttacaatacttctaatatggttc |
28081070 |
T |
|
| Q |
424 |
ttaagcagcattttgaaccagtagctgcatcgggaacttcactgagacattgtcaatcttttga |
487 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
28081069 |
ttaagcagcattttgaaccaggagctgcatcgggaacttcactgagacattgccaatcttttga |
28081006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 324 - 490
Target Start/End: Original strand, 27930876 - 27931042
Alignment:
| Q |
324 |
attggtggtcagtgtcatttattcaacggggaggcatcgacttcccaacctggccagggaatagaaatgtttccatcttacaatacatctaatatggttc |
423 |
Q |
| |
|
||||||||||| | |||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
27930876 |
attggtggtcaatctcatttattcaacgaggaggcatcgacttcccattctggccagggaatagaaatgtttccatcttacaatacttctaatatggttc |
27930975 |
T |
|
| Q |
424 |
ttaagcagcattttgaaccagtagctgcatcgggaacttcactgagacattgtcaatcttttgacca |
490 |
Q |
| |
|
||||| |||||||||||| || ||| ||| |||||||||||||||| |||| |||||||||||||| |
|
|
| T |
27930976 |
ttaaggagcattttgaactaggagcaacattgggaacttcactgagatattgccaatcttttgacca |
27931042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 4 - 40
Target Start/End: Original strand, 27935567 - 27935603
Alignment:
| Q |
4 |
tccaactttgtaagtggttttcatggtcgaatttttt |
40 |
Q |
| |
|
||||||||||||||||||||||||||| || |||||| |
|
|
| T |
27935567 |
tccaactttgtaagtggttttcatggttgactttttt |
27935603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 120 - 263
Target Start/End: Original strand, 46164457 - 46164600
Alignment:
| Q |
120 |
ggttgcttatatggatttaacctgacatatgttgaatttttctagctcaatgtggattggtttccacctgcggatgcttatctcaagcgaccacgtatcc |
219 |
Q |
| |
|
|||| ||||||||||||| |||| ||||| | | ||||||| ||||||||||||| ||||||| ||||| || ||||||||||||||| ||| |||| |
|
|
| T |
46164457 |
ggtttcttatatggatttgacctaacataactagtatttttccagctcaatgtggactggtttctgcctgctgaagcttatctcaagcgaacactgatcc |
46164556 |
T |
|
| Q |
220 |
ataagttaatatttgaactggtggaaaaccatggttcacatgaa |
263 |
Q |
| |
|
| | | | |||| |||||| ||||||||||||||||||| |||| |
|
|
| T |
46164557 |
agaggctgatatctgaactcgtggaaaaccatggttcacgtgaa |
46164600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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