View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14041_low_12 (Length: 388)
Name: NF14041_low_12
Description: NF14041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14041_low_12 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 295; Significance: 1e-165; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 7 - 388
Target Start/End: Original strand, 38511968 - 38512331
Alignment:
| Q |
7 |
gttttaaggaggacaatt-gtatgtgaaggtggataaaattaagtcagatcaatcaatgacaacaattttattcttgggtccataaatcatttggtacaa |
105 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
38511968 |
gttttaaggaggacaatttgtatgtgaaggtggataaaattaagtcagatcaatcgatgacaa---ttttattcttgggtccataaatcatttggtacaa |
38512064 |
T |
|
| Q |
106 |
caagaattgctagcagcagataccttgtttaatcgacaaaaagaaaatgctatctctcaacagtataagtaggagtttcagtaaaggtgttaaaacttaa |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38512065 |
caagaattgctagcagcagataccttgtttaatcaacaaaaagaaaatgctatctctcaacagtataagtaggagtttcagtaaaggtgttaaaacttaa |
38512164 |
T |
|
| Q |
206 |
aatagtgaaaggcttaaaacgatacatttcatatttgacgagttcattagttcgtactaagctcacatgtgatgttgctggatcagtagtgtctttgata |
305 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38512165 |
aatagtgaaaggcttaaaacgatacatttcatatttgacgagttcattagttcgtactaagctcacatgtgatgttgctggatcagtagtgtc------- |
38512257 |
T |
|
| Q |
306 |
caagtttgatgcaatttcaagagggtaatgctttgattgatgtatcatgatgtgtgattagggtcgtcatgtttatcatttga |
388 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38512258 |
-----ttgatgcaatttcaagagggtaatgct----ttgatgtatcatgatgtgtgattagggtcgtcatgtttatcatttga |
38512331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University