View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14041_low_16 (Length: 302)
Name: NF14041_low_16
Description: NF14041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14041_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 283
Target Start/End: Complemental strand, 54294703 - 54294443
Alignment:
| Q |
1 |
cttatgtggtttctctatcaaaagaatttaacttttgcattgtgagcaacaaatttctacattaactttctttacattctgccagtgatatctctattct |
100 |
Q |
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|||||||||||||| |||||||||||||||| |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54294703 |
cttatgtggtttctatatcaaaagaatttaaatttttccttgtgagcaacaaatttctacattaactttctttacattctgccagtgatatctctattct |
54294604 |
T |
|
| Q |
101 |
tgtagctgaatttctgttactaacaaatggcttgttattgtataggttaaagagaactatttgtgcttggctgaaatcacaaaaacttgaacttaataca |
200 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54294603 |
tgtagctgaatttctgttactaacaaatggct----------------------aactatttgtgcttggctgaaatcacaaaaacttgaacttaataca |
54294526 |
T |
|
| Q |
201 |
agccatatatagctttgatgaaatatgatagtgcgtcctagtgagcttagctcagttggttgagacaaaatgcgtaatatatg |
283 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |
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| T |
54294525 |
agccatatatagctttgatgaaatatgatagtgcgtcctagtgagcttagctcagttggttgggacaaaatgcataatatatg |
54294443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 145 - 187
Target Start/End: Original strand, 37896487 - 37896529
Alignment:
| Q |
145 |
ggttaaagagaactatttgtgcttggctgaaatcacaaaaact |
187 |
Q |
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| T |
37896487 |
ggttgaagagaactattactgcttggctgaaatcacaaaaact |
37896529 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 268
Target Start/End: Original strand, 36061397 - 36061430
Alignment:
| Q |
235 |
gtcctagtgagcttagctcagttggttgagacaa |
268 |
Q |
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| T |
36061397 |
gtccttgtgagcttagctcagttggttgagacaa |
36061430 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 121 - 233
Target Start/End: Original strand, 29115153 - 29115265
Alignment:
| Q |
121 |
taacaaatggcttgttattgtataggttaaagagaactatttgtgcttggctgaaatcacaaaaacttgaacttaatacaagccatatatagctttgatg |
220 |
Q |
| |
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||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| ||||| || |||||| || ||||||| | |||||| |||| |
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| T |
29115153 |
taacaaatgccttgttattgtataggttaaggagaactatttgtgcttggctgaaatcgcaaaatctcgaacttcattcaagccaactgtagcttggatg |
29115252 |
T |
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| Q |
221 |
aaatatgatagtg |
233 |
Q |
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|||||| |||||| |
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| T |
29115253 |
aaatataatagtg |
29115265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 283
Target Start/End: Complemental strand, 24120488 - 24120441
Alignment:
| Q |
235 |
gtcctagtgagcttagctcagttggttgagacaaaatgcgtaatatatg |
283 |
Q |
| |
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||||| |||||||||||||||||||| ||||| |||||| ||||||||| |
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| T |
24120488 |
gtcctcgtgagcttagctcagttggtagagac-aaatgcataatatatg |
24120441 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 283
Target Start/End: Complemental strand, 8999969 - 8999912
Alignment:
| Q |
225 |
atgatagtgcgtcctagtgagcttagctcagttggttgagacaaaatgcgtaatatatg |
283 |
Q |
| |
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|||||| || ||||| |||||||||||||||||||| ||||| |||||| ||||||||| |
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| T |
8999969 |
atgatattgtgtcctcgtgagcttagctcagttggtagagac-aaatgcataatatatg |
8999912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 284
Target Start/End: Complemental strand, 18589669 - 18589620
Alignment:
| Q |
235 |
gtcctagtgagcttagctcagttggttgagacaaaatgcgtaatatatgt |
284 |
Q |
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||||| |||||||||||||||||||||| |||||||| | ||| |||||| |
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| T |
18589669 |
gtcctcgtgagcttagctcagttggttgggacaaaatacataaaatatgt |
18589620 |
T |
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