View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14041_low_19 (Length: 279)
Name: NF14041_low_19
Description: NF14041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14041_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 13 - 260
Target Start/End: Complemental strand, 45739545 - 45739298
Alignment:
| Q |
13 |
tcatcacaagcactcatccaaaggttgtaagacagaacattcaagggtactttatttcgtttcatttgttggataactaggggtaccttccggtactcac |
112 |
Q |
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| T |
45739545 |
tcatcacaagcactcatccaaaggttgtaagacagaacattcaagggtactttatttcgtttcatttgttggataactaggggtaccttccagtactcac |
45739446 |
T |
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| Q |
113 |
atgtggcaagatatagtttcatcatttcattataagggtgagcgtttaccactagccccagttcatagagcttctccatgaaggtctcagctttactggt |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45739445 |
atgtggcaagatatagtttcatcatttcattataagggtgagcgtttaccaccagccccagttcatagagcttctccatgaaggtctcagctttactggt |
45739346 |
T |
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| Q |
213 |
gtccctgtctcctacatagccacgtagaagtgggagataggcggcttt |
260 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45739345 |
gtccctgtctcctacatagccacgtagaagtgggagataggcggcttt |
45739298 |
T |
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