View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14041_low_2 (Length: 664)
Name: NF14041_low_2
Description: NF14041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14041_low_2 |
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| [»] scaffold0667 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 470; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 8 - 648
Target Start/End: Original strand, 45242755 - 45243408
Alignment:
| Q |
8 |
aatatcacataagaatatagatataaacagca---gcagcaacccattttaaacaggaactgtacattaatctggaggaatttcactatacacaaatttc |
104 |
Q |
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||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45242755 |
aatatcacataagaatatagatataaacaacaacagcagcaacccattttaaacaggaactgtacattaatctggaggaatttcactatacacaaatttc |
45242854 |
T |
|
| Q |
105 |
taaacaacatttttcttatacacggataccacagcagggtggaatagtctcaactcagagataagctcgtcaaaatgatgatttaggagtgaggatatat |
204 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
45242855 |
taaacaacatttttcttatacacggataccacagcagggtggaatagtctcaactcagaaataagctcgtcaaaatgatgatttaggagtgaggatatat |
45242954 |
T |
|
| Q |
205 |
aaaataacgaagaggnnnnnnnntcaattcatatcgagattctttctttaactaaatttatatgaaaatgaattgttgtctagcttaatgcttttcttcg |
304 |
Q |
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|
||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45242955 |
aaaataacgaagaggaaaaaaaatcaattcatatcgaggttctttctttaactaaatttatatgaaaatgaattgttgtctagcttaatgcttttcttcg |
45243054 |
T |
|
| Q |
305 |
tcacacacaaaacatacactctttattgtttctttcgaaattcaacatgcagtcattttcaaaatcatgtaaaaatatgtacataaacaaacgatacaaa |
404 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
45243055 |
tcacacacacaacatacactctttattgtttctttcgaaattcaacatgcagtcattttcaaaatcatgtaaaaatatgtacataaacaaacgacacaaa |
45243154 |
T |
|
| Q |
405 |
aagttgattcgatttgacctctaataaaatgcagttatgttatttcgacatcaaaatacatacaccataatatatga--------tgtttatccctatct |
496 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| |
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| T |
45243155 |
aagttgattcgatttgacctctaataaaatgcagttatgttatttcgacatcaaaatacatacaccataaaatatgatacagatgtgtttatccctatct |
45243254 |
T |
|
| Q |
497 |
ctcttattctttatcttctagaacttacagata----nnnnnnnnnnnnnnnnncatgcaaaaaccaatggatactgtacctgatatcaaaattttgatg |
592 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
45243255 |
ctcttattctttatcttctagaacttacagatatttttttttaaaaaaaaaaaacatgcaaaaaccaatggatac--aacctgatatcaaaattttgatg |
45243352 |
T |
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| Q |
593 |
tccagacatcatttctcaatcaaaaaagtttaggtaccgatatcatgcgatggtat |
648 |
Q |
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||||||||| |||||||||||||||||||||| |||||||||||||| |||||||| |
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| T |
45243353 |
tccagacatgatttctcaatcaaaaaagtttaagtaccgatatcatgtgatggtat |
45243408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 574 - 612
Target Start/End: Original strand, 45237442 - 45237480
Alignment:
| Q |
574 |
tgatatcaaaattttgatgtccagacatcatttctcaat |
612 |
Q |
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| T |
45237442 |
tgatatcaaaactttgatgtccaaacatcatttctcaat |
45237480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 54; Significance: 1e-21; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 385 - 473
Target Start/End: Complemental strand, 8576934 - 8576845
Alignment:
| Q |
385 |
acataaacaaacgatacaa-aaagttgattcgatttgacctctaataaaatgcagttatgttatttcgacatcaaaatacatacaccata |
473 |
Q |
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|||||||||||| | |||| |||| |||||| ||||||||||||| ||||||||||| ||||||||| |||||||||||||||||||||| |
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| T |
8576934 |
acataaacaaactacacaagaaaggtgattcaatttgacctctaacaaaatgcagttgtgttatttcaacatcaaaatacatacaccata |
8576845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 228 - 293
Target Start/End: Complemental strand, 8580242 - 8580177
Alignment:
| Q |
228 |
tcaattcatatcgagattctttctttaactaaatttatatgaaaatgaattgttgtctagcttaat |
293 |
Q |
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| T |
8580242 |
tcaattcatattgatattctttctttaacctaatttataagaaaatggatcattgtctaacttaat |
8580177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 196
Target Start/End: Complemental strand, 9061925 - 9061857
Alignment:
| Q |
130 |
ataccacagcagggtggaatagtctcaac--tcagagataagctcgtcaaaatgatgatttaggagtga |
196 |
Q |
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|||||||||||||||||||||||||| || ||||| ||||| | | |||||| || |||||||||||| |
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| T |
9061925 |
ataccacagcagggtggaatagtctccacattcagaaataagttggccaaaataattatttaggagtga |
9061857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 130 - 158
Target Start/End: Original strand, 9315508 - 9315536
Alignment:
| Q |
130 |
ataccacagcagggtggaatagtctcaac |
158 |
Q |
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| T |
9315508 |
ataccacagcagggtggaatagtctcaac |
9315536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 122 - 158
Target Start/End: Complemental strand, 12019637 - 12019601
Alignment:
| Q |
122 |
atacacggataccacagcagggtggaatagtctcaac |
158 |
Q |
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|||||| ||||||||| |||||||||||||||||||| |
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| T |
12019637 |
atacacagataccacaacagggtggaatagtctcaac |
12019601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0667 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0667
Description:
Target: scaffold0667; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 194
Target Start/End: Original strand, 2000 - 2058
Alignment:
| Q |
138 |
gcagggtggaatagtctcaac--tcagagataagctcgtcaaaatgatgatttaggagt |
194 |
Q |
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||||||||||||||||||||| ||||| ||||||| |||||||| || |||||||||| |
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| T |
2000 |
gcagggtggaatagtctcaacattcagaaataagctggtcaaaataattatttaggagt |
2058 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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