View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14041_low_22 (Length: 235)
Name: NF14041_low_22
Description: NF14041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14041_low_22 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 38512639 - 38512401
Alignment:
| Q |
1 |
atctaggtgaggatgcaacctcaaagatgtcttttagagccgaactaaaaacactt--attaatcttcggataagtagtgtttctcttgacgagtattta |
98 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||| || || |||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
38512639 |
atctaggtgaggatgcaacctcaaagatgt-ttttagagccgaactaaaaacatttttataaatcttcggaaaagtagtgtttctcttgacgagtattta |
38512541 |
T |
|
| Q |
99 |
agaggttttatctaatgtgtataatccct---nnnnnnnnnnnnnntctaatgtgtataagtaaattagtcttgcaccatatcaataaatcacatatatc |
195 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
38512540 |
agaggttttatctaatgtgtataatccctaaaaaaaaaaaaaaaaaactaatgtgtataagtaaattagtcttgcagcatatcaataaatcacatatatc |
38512441 |
T |
|
| Q |
196 |
acacttattccaaccataaaaataaacttatatgtggcgc |
235 |
Q |
| |
|
||| ||| |||||||||||||||||||||||||||||||| |
|
|
| T |
38512440 |
acatttaatccaaccataaaaataaacttatatgtggcgc |
38512401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University