View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14041_low_26 (Length: 207)
Name: NF14041_low_26
Description: NF14041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14041_low_26 |
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Alignment Details
Target: chr2 (Bit Score: 172; Significance: 1e-92; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 16 - 191
Target Start/End: Complemental strand, 5684193 - 5684018
Alignment:
| Q |
16 |
aaggggcaggatttgacaaactatgaggagaagggccagcatttccagcactacaaacaacaacaatgtttttccttacagcttgtaatgcacccttagc |
115 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5684193 |
aaggggaaggatttgacaaactatgaggagaagggccagcatttccagcactacaaacaacaacaatgtttttccttacagcttgtaatgcacccttagc |
5684094 |
T |
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| Q |
116 |
aatcacatcatcctcatatttcaatggcgcaggaaacccaatggaaaggtttataacatcaacaccatcttcaatt |
191 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5684093 |
aatcacatcatcctcatatttcaatggcgcaggaaacccaatggaaaggtttataacatcaacaccatcttcaatt |
5684018 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 16 - 191
Target Start/End: Complemental strand, 5694069 - 5693894
Alignment:
| Q |
16 |
aaggggcaggatttgacaaactatgaggagaagggccagcatttccagcactacaaacaacaacaatgtttttccttacagcttgtaatgcacccttagc |
115 |
Q |
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||||||||||||||||||||||||| ||| |||| ||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
5694069 |
aaggggcaggatttgacaaactatgtggaaaaggaccaaaatttccagcactacaaacaaccacaatgtttttccttacagcttgtaatgcacccttagc |
5693970 |
T |
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| Q |
116 |
aatcacatcatcctcatatttcaatggcgcaggaaacccaatggaaaggtttataacatcaacaccatcttcaatt |
191 |
Q |
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|||||||||||| |||||||||||||| || | ||| ||||||| | ||| |||||||||||||||||||||| |
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| T |
5693969 |
aatcacatcatcttcatatttcaatggaccataatgccctatggaaatgcttaaaacatcaacaccatcttcaatt |
5693894 |
T |
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