View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14041_low_3 (Length: 563)
Name: NF14041_low_3
Description: NF14041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14041_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 471; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 1 - 547
Target Start/End: Complemental strand, 7354748 - 7354202
Alignment:
| Q |
1 |
attataagaatgcggcagcgagacatatcgagaacataaagacactttatattctagtgtacactaagcgaacaagattcgaaagaagagaaaaatggca |
100 |
Q |
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| T |
7354748 |
attataagaatgaggcatcatgacatatcgtgcacatatatgcaatttatattctcgtgtaaactaagcaaactagattcgaaagaagagaaaaatggca |
7354649 |
T |
|
| Q |
101 |
gctgaagaaggacaggtgatcggtgttcataccgttgaacagtggaaggaggagatccagaagggaaatgactccaaaaaactggtattcatcaaatact |
200 |
Q |
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| T |
7354648 |
gctgaagaaggacaggtgatcggtgttcataccgttgaacagtggaaggaggagatccagaagggaaatgactccaaaaaactggtattcatcaaatact |
7354549 |
T |
|
| Q |
201 |
atatatacataactttatgttcaatcttcttcatatatatttgcttttcaaccctgtatattttgatccaaaagtgtttatgaattgttcaatattcata |
300 |
Q |
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| T |
7354548 |
atatatacataactttatgttcaatcttcttcatatatatttgcttttcaaccctgtatattttgatccaaaagtgtttatgaattgttcaatattcata |
7354449 |
T |
|
| Q |
301 |
aaatctaagttacatgtatattttagtgtatttggattaacaatttaatttaaccactcaagctttaagttgccttctaagcatccgaacctaagcacat |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7354448 |
aaatctaagttacatgtatattttagtgtatttggattaacaatttaatttaaccactcaagctttaagttgccttctaagcatccgaacctaagcacat |
7354349 |
T |
|
| Q |
401 |
gagaggagccaccgcggtgttaaaaccttaattatagtggtttcctactaaagtatggttaaatctatggtgcataggtgagacaagttttacaccatgt |
500 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| ||||||| |
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| T |
7354348 |
gagaggagccaccgcggtgttaaaaccttaattatagtggtttcctactaaagtatgattaaatctatggtgcataggtgagataagttttataccatgt |
7354249 |
T |
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| Q |
501 |
atacaaacttgtttttaatattggatcaataaatcttaccattaaat |
547 |
Q |
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| T |
7354248 |
atacaaatttgcttttaatattggatcaataaatcttaccattaaat |
7354202 |
T |
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