View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14041_low_6 (Length: 489)
Name: NF14041_low_6
Description: NF14041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14041_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 419; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 19 - 469
Target Start/End: Original strand, 30431561 - 30432011
Alignment:
| Q |
19 |
tcaattgatcataatagtcggatcataaaaaatgtttggcttttattatcattgcttctaaagtcgaacaaatgactgattatgatgtgtgaaccatgta |
118 |
Q |
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| T |
30431561 |
tcaattgatcataacagtcggatcataaaaaatgtttggcttttattatcactgcttctaaagtcgaacaaatgactgattatgatgtgtgaaccatgta |
30431660 |
T |
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| Q |
119 |
aaactttttataccgacggtggatgaaaattaaactctttttatactgattgtgaatttccaatttgtatatgtttagaggccaagctaagggaaggggt |
218 |
Q |
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| T |
30431661 |
aaactttttataccgacggtggatgaaaattaaactctttttatattgattgtgaatttccaatttgtatatgtttagaggccaagctaagggaaggggt |
30431760 |
T |
|
| Q |
219 |
tatgtcaaactgaaagacggtgatattttacgtcttgcgaaattgattcttcctgcttcgaattttgcattttcgaagactacagagttgttctctggag |
318 |
Q |
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| T |
30431761 |
tatgtcaaactgaaagacgatgatattttacgtcttgcgaaattgattcttcctgctttgaattttgcattttcaaagactacagagttgttctctggag |
30431860 |
T |
|
| Q |
319 |
aaccatccatgaccctgaaagtaattcttgcaactttggtcctattttcctgtttttgtgcaataacagaacctctttgtagtgttagttaagtctcttt |
418 |
Q |
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| T |
30431861 |
aaccatccatgaccctgaaagtaattcttgcaactttggtcctactttcctgtttttgtgcaataacagaacctctttgtattgttagttaagtctcttt |
30431960 |
T |
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| Q |
419 |
tttcttcttccaatcgttgcaggtagctcctttgcttctactaggagctga |
469 |
Q |
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| T |
30431961 |
tttcttcttccaatcgttgcaggtagctcctttgcttctactaggagctga |
30432011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 217 - 343
Target Start/End: Original strand, 38775454 - 38775580
Alignment:
| Q |
217 |
gttatgtcaaactgaaagacggtgatattttacgtcttgcgaaattgattcttcctgcttcgaattttgcattttcgaagactacagagttgttctctgg |
316 |
Q |
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|||||||||| | ||||| | |||| |||| |||||||| ||||||||||||||||||| ||||||||| |||| | ||||| || | | ||||| || |
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| T |
38775454 |
gttatgtcaagattaaagaagatgatgttttgcgtcttgcaaaattgattcttcctgctttaaattttgcaatttcaaggactagagtgctattctcagg |
38775553 |
T |
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| Q |
317 |
agaaccatccatgaccctgaaagtaat |
343 |
Q |
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| T |
38775554 |
agaaccatcaatgacccttaaagtaat |
38775580 |
T |
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