View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14041_low_7 (Length: 469)
Name: NF14041_low_7
Description: NF14041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14041_low_7 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 406; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 19 - 464
Target Start/End: Original strand, 1329193 - 1329638
Alignment:
| Q |
19 |
agacgagccacaccgcacttgcaagagcaagaactttatcggaaaggtaatgttcttaactgcaattacctgcccaagatttgatgctgaagggaacgaa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |
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|
| T |
1329193 |
agacgagccacaccgcacttgcaagagcaagaactttatcggaaaggtaatgttcttaactgcaattacccgcccaagatttgatgttgaagggaacgaa |
1329292 |
T |
|
| Q |
119 |
accttttctggtaaaataggtgtttttccgttcgtcttcaaagagccagcaaagagaaatagtgtaaatagagttgcaggaactcttgaaacaaaattca |
218 |
Q |
| |
|
|| |||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
1329293 |
acattttctggtaaaataggtgtttttccgttcatctacaaagagccagcaaagagaaatagtgtaaatagagttgcaggaactcttgaaacaaaatcca |
1329392 |
T |
|
| Q |
219 |
tcacttcagtcaatagagaagtttgtagaaagtttttgatcgaaaaagttattcctgccataaaagaaaagtggccaagagatgaaataggccaaccaat |
318 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
1329393 |
tcacttcagtcaatagagaaatttgtagaaagtttttgatcgaaaaagttattcctgccataaaacaaaagtggccaagagatgaaataggccaaccaat |
1329492 |
T |
|
| Q |
319 |
tttcattcaacaagataacgcaagatgtcacgtcaatgagaacgacattgaatttcgtcaagctgcctcacaagatgggttcgacattcgactgatgtgt |
418 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1329493 |
tttcattcaacaggataacgcaagatgtcacgtcaatgagaacgacattgaatttcgtcaagctgcctcacaagatgggttcgacattcgactgatgtgt |
1329592 |
T |
|
| Q |
419 |
caacctcccaattcccctgaactaaatgtcttagacctttgcttct |
464 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
1329593 |
caacctcccaattcccctgaactaaatgtcttagaccttggcttct |
1329638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 413 - 457
Target Start/End: Original strand, 10328604 - 10328648
Alignment:
| Q |
413 |
atgtgtcaacctcccaattcccctgaactaaatgtcttagacctt |
457 |
Q |
| |
|
|||||||||||||| ||||| ||||| |||||||||||||||||| |
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|
| T |
10328604 |
atgtgtcaacctccaaattctcctgatctaaatgtcttagacctt |
10328648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 402; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 19 - 464
Target Start/End: Complemental strand, 42540361 - 42539916
Alignment:
| Q |
19 |
agacgagccacaccgcacttgcaagagcaagaactttatcggaaaggtaatgttcttaactgcaattacctgcccaagatttgatgctgaagggaacgaa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |
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|
| T |
42540361 |
agacgagccacaccgcacttgcaagagcaagaactttatcggaaaggtaatgttcttaactgcaattacccgcccaagatttgatgttgaagggaacgaa |
42540262 |
T |
|
| Q |
119 |
accttttctggtaaaataggtgtttttccgttcgtcttcaaagagccagcaaagagaaatagtgtaaatagagttgcaggaactcttgaaacaaaattca |
218 |
Q |
| |
|
|| ||||||| |||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
42540261 |
acattttctgataaaataggtgtttttccgttcatctacaaagagccagcaaagagaaatagtgtaaatagagttgcaggaactcttgaaacaaaatcca |
42540162 |
T |
|
| Q |
219 |
tcacttcagtcaatagagaagtttgtagaaagtttttgatcgaaaaagttattcctgccataaaagaaaagtggccaagagatgaaataggccaaccaat |
318 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
42540161 |
tcacttcagtcaatagagaaatttgtagaaagtttttgatcgaaaaagttattcctgccataaaacaaaagtggccaagagatgaaataggccaaccaat |
42540062 |
T |
|
| Q |
319 |
tttcattcaacaagataacgcaagatgtcacgtcaatgagaacgacattgaatttcgtcaagctgcctcacaagatgggttcgacattcgactgatgtgt |
418 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42540061 |
tttcattcaacaggataacgcaagatgtcacgtcaatgagaacgacattgaatttcgtcaagctgcctcacaagatgggttcgacattcgactgatgtgt |
42539962 |
T |
|
| Q |
419 |
caacctcccaattcccctgaactaaatgtcttagacctttgcttct |
464 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
42539961 |
caacctcccaattcccctgaactaaatgtcttagaccttggcttct |
42539916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 90 - 301
Target Start/End: Original strand, 37933895 - 37934106
Alignment:
| Q |
90 |
gcccaagatttgatgctgaagggaacgaaaccttttctggtaaaataggtgtttttccgttcgtcttcaaagagccagcaaagagaaatagtgtaaatag |
189 |
Q |
| |
|
|||| ||||||||||| |||||||| ||| ||||| || ||||| |||||||| || || ||| |||||||||| || ||||| ||||| ||||| |
|
|
| T |
37933895 |
gcccgagatttgatgcagaagggaatgaagtattttcaggaaaaatcggtgttttcccttttgtcactcaagagccagctaaaagaaacagtgttaatag |
37933994 |
T |
|
| Q |
190 |
agttgcaggaactcttgaaacaaaattcatcacttcagtcaatagagaagtttgtagaaagtttttgatcgaaaaagttattcctgccataaaagaaaag |
289 |
Q |
| |
|
|| |||||| || || ||||||||| || ||||| || | | ||||||| |||||| ||||| || ||||| ||| | |||||||| | ||||||| |
|
|
| T |
37933995 |
agctgcagggacactagaaacaaaaccaataacttcggtaaccaaagaagttagtagaacttttttaattgaaaaggttctacctgccatcagagaaaag |
37934094 |
T |
|
| Q |
290 |
tggccaagagat |
301 |
Q |
| |
|
||||||| |||| |
|
|
| T |
37934095 |
tggccaaaagat |
37934106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 413 - 457
Target Start/End: Original strand, 37934218 - 37934262
Alignment:
| Q |
413 |
atgtgtcaacctcccaattcccctgaactaaatgtcttagacctt |
457 |
Q |
| |
|
|||||||||||||| ||||| ||||| |||||||||||||||||| |
|
|
| T |
37934218 |
atgtgtcaacctccaaattctcctgatctaaatgtcttagacctt |
37934262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 19 - 464
Target Start/End: Original strand, 17650618 - 17651063
Alignment:
| Q |
19 |
agacgagccacaccgcacttgcaagagcaagaactttatcggaaaggtaatgttcttaactgcaattacctgcccaagatttgatgctgaagggaacgaa |
118 |
Q |
| |
|
||||||||||| ||||||||||| |||||||||||||| | |||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| |
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|
| T |
17650618 |
agacgagccacgccgcacttgcataagcaagaactttattgaaaaggtaatgttcttaactgcaattacccgcccaagatttgatgctggagggaacgaa |
17650717 |
T |
|
| Q |
119 |
accttttctggtaaaataggtgtttttccgttcgtcttcaaagagccagcaaagagaaatagtgtaaatagagttgcaggaactcttgaaacaaaattca |
218 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || |
|
|
| T |
17650718 |
accttttctggtaaaataggtgttttcccgttcgtcttcaaagagccagcaaagagaaatagtgtaaatagagtcgcaggaactcttgaaacaaaatcca |
17650817 |
T |
|
| Q |
219 |
tcacttcagtcaatagagaagtttgtagaaagtttttgatcgaaaaagttattcctgccataaaagaaaagtggccaagagatgaaataggccaaccaat |
318 |
Q |
| |
|
|||||||||| |||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
17650818 |
tcacttcagtgaatagagaagactgtagaaagtttttgatcgaaaaagttattccaaccataaaagaaaagtgtccaagagatgaaataggccaaccaat |
17650917 |
T |
|
| Q |
319 |
tttcattcaacaagataacgcaagatgtcacgtcaatgagaacgacattgaatttcgtcaagctgcctcacaagatgggttcgacattcgactgatgtgt |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |
|
|
| T |
17650918 |
tttcattcaacaagataacgcaagatgtcacgtcaatgagaacaacattgaatttcgtcaagctgcctcacaagatggtttcgacattcgattgatgtgt |
17651017 |
T |
|
| Q |
419 |
caacctcccaattcccctgaactaaatgtcttagacctttgcttct |
464 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||| |||||| |
|
|
| T |
17651018 |
caacctcccaattcccttgaactaaatgtcttagaccttggcttct |
17651063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 97 - 457
Target Start/End: Complemental strand, 17783459 - 17783099
Alignment:
| Q |
97 |
atttgatgctgaagggaacgaaaccttttctggtaaaataggtgtttttccgttcgtcttcaaagagccagcaaagagaaatagtgtaaatagagttgca |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17783459 |
atttgatgctgaagggaacgaaaccttttctggtaaaataggtgtttttccgttcgtcttcaaagagccagcaaagagaaatagtgtaaatagagttgca |
17783360 |
T |
|
| Q |
197 |
ggaactcttgaaacaaaattcatcacttcagtcaatagagaagtttgtagaaagtttttgatcgaaaaagttattcctgccataaaagaaaagtggccaa |
296 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
17783359 |
ggaactcttgaaacaaaatccatcacttcagtcaatagagaagtttgtagaaagtttttgatcgaaaaagttattcctgtcataaaagaaaagtggccaa |
17783260 |
T |
|
| Q |
297 |
gagatgaaataggccaaccaattttcattcaacaagataacgcaagatgtcacgtcaatgagaacgacattgaatttcgtcaagctgcctcacaagatgg |
396 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
17783259 |
gagataaaataggccaaccaattttcattcaacaagataacgcaagatgtcacgtcaatgagaacgacattgaatttcgtcaagcttcctcacaagatgg |
17783160 |
T |
|
| Q |
397 |
gttcgacattcgactgatgtgtcaacctcccaattcccctgaactaaatgtcttagacctt |
457 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17783159 |
gttcgacattcgactgatgtgtcaacctcccaattcccctgaactaaatgtcttagacctt |
17783099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 413 - 457
Target Start/End: Original strand, 384661 - 384705
Alignment:
| Q |
413 |
atgtgtcaacctcccaattcccctgaactaaatgtcttagacctt |
457 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||||||||||||||| |
|
|
| T |
384661 |
atgtgtcaacctccaaattcccctgatctaaatgtcttagacctt |
384705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 90 - 295
Target Start/End: Original strand, 384338 - 384543
Alignment:
| Q |
90 |
gcccaagatttgatgctgaagggaacgaaaccttttctggtaaaataggtgtttttccgttcgtcttcaaagagccagcaaagagaaatagtgtaaatag |
189 |
Q |
| |
|
|||| ||||||||||| |||||||| ||| ||||| || ||||| |||||||| || || ||| |||||||||| || ||||| ||||| ||||| |
|
|
| T |
384338 |
gcccgagatttgatgcagaagggaatgaagtattttcaggaaaaatcggtgttttcccttttgtcactcaagagccagctaaaagaaacagtgttaatag |
384437 |
T |
|
| Q |
190 |
agttgcaggaactcttgaaacaaaattcatcacttcagtcaatagagaagtttgtagaaagtttttgatcgaaaaagttattcctgccataaaagaaaag |
289 |
Q |
| |
|
|| |||||| || || ||||||||| || ||||| || | | ||||||| |||||| ||||| || ||||| ||| | |||||||| | ||||||| |
|
|
| T |
384438 |
agctgcagggacactagaaacaaaaccaataacttcggtaaccaaagaagttagtagaacttttttaattgaaaaggttctacctgccatcagagaaaag |
384537 |
T |
|
| Q |
290 |
tggcca |
295 |
Q |
| |
|
|||||| |
|
|
| T |
384538 |
tggcca |
384543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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