View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14041_low_8 (Length: 466)
Name: NF14041_low_8
Description: NF14041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14041_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 390; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 7 - 451
Target Start/End: Complemental strand, 31212533 - 31212075
Alignment:
| Q |
7 |
atattttcccatgttaattgattagtcaatgttatttcaacatttctgtaatagcaagaacagtatagtgtatgttcggtttgcaatttaaaaactgcaa |
106 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
31212533 |
atattttcccatgttaattgattagtcaatgttatttcaacatttctgtaatagcaagaacagtatagtgtatgtttggtttgcaatttaaaaactgcaa |
31212434 |
T |
|
| Q |
107 |
gtctttggacccaaagtatccaaagattttatgagaaaattgtatgtttagttgtttacatcatttcatagattcaacaaagttttacgttagtttgcca |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |
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| T |
31212433 |
gtctttggacccaaagtatccaaagattttatgagaaaattgtatgtttagttgtttacatcatgtcatagattcaacaaagttttacgtt-gtttgcca |
31212335 |
T |
|
| Q |
207 |
accgcataacaccagagttatccaacggtgtctcctcttcatctgaaagataactacttgcatgatgttgtgaaactcttgtttgtgaaacactagctgg |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31212334 |
accgcataacaccagagttatccaacggtgtctcctcttcatctgaaagataactccttgcatgatgttgtgaaactcttgtttgtgaaacactagctgg |
31212235 |
T |
|
| Q |
307 |
cattgaaagttaagacaatttctcccatcagcagtatgtttaggctgtgtttggcagtcaaataaacagagttgtcacatttgacaaaata--------- |
397 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31212234 |
cattgaaagttaagacaatttctcccatcagcagtatgtttaggctgtgtttggcagtcaaataaacagagttgtcacatttgacaaaataaaataatat |
31212135 |
T |
|
| Q |
398 |
------agccatttacataccttccttattagacttggaggaagcttctgatcttgtgta |
451 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31212134 |
gaatttagccatttacataccttccttattagacttggaggaagcttctgatcttgtgta |
31212075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 7 - 451
Target Start/End: Complemental strand, 31218288 - 31217830
Alignment:
| Q |
7 |
atattttcccatgttaattgattagtcaatgttatttcaacatttctgtaatagcaagaacagtatagtgtatgttcggtttgcaatttaaaaactgcaa |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
31218288 |
atattttcccatgttaattgattagtcaatgttatttcaacatttctgtaatagcaagaacagtatagtgtatgtttggtttgcaatttaaaaactgcaa |
31218189 |
T |
|
| Q |
107 |
gtctttggacccaaagtatccaaagattttatgagaaaattgtatgtttagttgtttacatcatttcatagattcaacaaagttttacgttagtttgcca |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |
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| T |
31218188 |
gtctttggacccaaagtatccaaagattttatgagaaaattgtatgtttagttgtttacatcatgtcatagattcaacaaagttttacgtt-gtttgcca |
31218090 |
T |
|
| Q |
207 |
accgcataacaccagagttatccaacggtgtctcctcttcatctgaaagataactacttgcatgatgttgtgaaactcttgtttgtgaaacactagctgg |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31218089 |
accgcataacaccagagttatccaacggtgtctcctcttcatctgaaagataactccttgcatgatgttgtgaaactcttgtttgtgaaacactagctgg |
31217990 |
T |
|
| Q |
307 |
cattgaaagttaagacaatttctcccatcagcagtatgtttaggctgtgtttggcagtcaaataaacagagttgtcacatttgacaaaata--------- |
397 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31217989 |
cattgaaagttaagacaatttctcccatcagcagtatgtttaggctgtgtttggcagtcaaataaacagagttgtcacatttgacaaaataaaataatat |
31217890 |
T |
|
| Q |
398 |
------agccatttacataccttccttattagacttggaggaagcttctgatcttgtgta |
451 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31217889 |
gaatttagccattttcataccttccttattagacttggaggaagcttctgatcttgtgta |
31217830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 38 - 448
Target Start/End: Original strand, 47896907 - 47897327
Alignment:
| Q |
38 |
ttatttcaacatttctgtaatagcaagaacagtatagtgtatgttcggtttgcaatttaaaaactgcaagtctttggacccaaagtatccaaagatttta |
137 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |||| |
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|
| T |
47896907 |
ttatttcaacatttctgtaatagcaagaacagtataatgtatgtttggtttgcaatttaaaaactgcaagtctttggacccaaagtatccaaataattta |
47897006 |
T |
|
| Q |
138 |
-tgagaaaattgtatgtttagttgtttacatcatttcatagattcaacaaagttttacgttagtttgccaaccgcataacaccagagttatccaacggtg |
236 |
Q |
| |
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| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||| |
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| T |
47897007 |
ataagaaaattgtatgtttagttgtttacatcatgtcatagattcaacaaagttttacgtt-gtttgccaaccgca--------gagttatccaatggtg |
47897097 |
T |
|
| Q |
237 |
tctcct---cttcatctgaaagataactacttgcatgatgttgtgaaactcttgtttgtgaaacactagctggcattgaaagttaagacaatttctccca |
333 |
Q |
| |
|
|||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47897098 |
tctcctgatcttgatctgaaagataactacttgcatgatgttgtgaaactcttgtttgtgaaacactagctggcattgaaagttaagacaatttctccca |
47897197 |
T |
|
| Q |
334 |
tcagcagtatgtttaggctgtgtttggcagtcaaataaacagagttgtcacatttgacaaaata---------------agccatttacataccttcctt |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||| |
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| T |
47897198 |
tcagcagtatgtttaggctgtgtttggcagtcaaataaacagagttgtcacatttgacaaaataaaataatatgaatttagccacttgcataccttcctt |
47897297 |
T |
|
| Q |
419 |
attagacttggaggaagcttctgatcttgt |
448 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
47897298 |
attagacttggaggaagcttctgatcttgt |
47897327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 18 - 156
Target Start/End: Complemental strand, 4950555 - 4950425
Alignment:
| Q |
18 |
tgttaattgattagtcaatgttatttcaacatttctgtaatagcaagaacagtatagtgtatgttcggtttgcaatttaaaaactgcaagtctttggacc |
117 |
Q |
| |
|
|||| |||||||||||||| | ||||| |||||||||||| ||||||||||||||||| |||||| ||| |||||||||||||||||||||| |
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| T |
4950555 |
tgtttattgattagtcaatatgatttctacatttctgtaa--------acagtatagtgtatgtttagtttgctattgaaaaactgcaagtctttggacc |
4950464 |
T |
|
| Q |
118 |
caaagtatccaaagattttatgagaaaattgtatgttta |
156 |
Q |
| |
|
|||| ||||| |||||||||| |||||| |||||||||| |
|
|
| T |
4950463 |
caaattatcccaagattttataagaaaactgtatgttta |
4950425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 18 - 156
Target Start/End: Complemental strand, 4957526 - 4957396
Alignment:
| Q |
18 |
tgttaattgattagtcaatgttatttcaacatttctgtaatagcaagaacagtatagtgtatgttcggtttgcaatttaaaaactgcaagtctttggacc |
117 |
Q |
| |
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|||| |||||||||||||| | ||||| |||||||||||| ||||||||||||||||| |||||| ||| |||||||||||||||||||||| |
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| T |
4957526 |
tgtttattgattagtcaatatgatttctacatttctgtaa--------acagtatagtgtatgtttagtttgctattgaaaaactgcaagtctttggacc |
4957435 |
T |
|
| Q |
118 |
caaagtatccaaagattttatgagaaaattgtatgttta |
156 |
Q |
| |
|
|||| ||||| |||||||||| |||||| |||||||||| |
|
|
| T |
4957434 |
caaattatcccaagattttataagaaaactgtatgttta |
4957396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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