View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14041_low_9 (Length: 462)
Name: NF14041_low_9
Description: NF14041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14041_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 18 - 448
Target Start/End: Original strand, 404857 - 405285
Alignment:
| Q |
18 |
gaaatggctgatttttgtagaaggactgttagtactatatggcattatcatggtggatgtgttgttggtagggttgttaatcgtcatcttaaggtcattg |
117 |
Q |
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| T |
404857 |
gaaatggctgatttttgtaaaaggactgttagtactatatggcattatcatggtggatgtgttgttggtagggttgttaatcgtcatcttaaggtcattg |
404956 |
T |
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| Q |
118 |
gaattgattctcttagaattgtggatggttctgtttttagtgtttcacctggaactaatcctcaggctacattaatgatgcttggaaggtgagtctttta |
217 |
Q |
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| T |
404957 |
gaattgattctcttagaattgtggatggttctgtttttagtgtttcacctggaactaatcctcaggctacactaatgatgcttggaaggtgagtctttta |
405056 |
T |
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| Q |
218 |
gtttcttttatgtgtatcgatcaattcagttttggtagctatatgaattggtgtttgattaatgtggaatgagtgattattaatcatgttttgtgattct |
317 |
Q |
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| T |
405057 |
gtttcttt--tgtgtattgatcaattcagttttggtagctatatgaattggtgtttgattaatgtggaatgagtgattattaatcatgttttgtgattct |
405154 |
T |
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| Q |
318 |
attttggcaggtattttgggctgaagataatcagagaaagggaagggaagggtacacatgagttgtaatcctgtaattcctgtagttctgttttggtgtt |
417 |
Q |
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| T |
405155 |
attttggcaggtattttgggctgaagataatcagagaaagggaagggaagggtacacatgagttgtgaccctgtaattcctggagttctgttttggtgtt |
405254 |
T |
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| Q |
418 |
agacatgtattagaatgtgtaaggtgtaatc |
448 |
Q |
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| T |
405255 |
cgacatgtattagaatgtgtaaggtgtaatc |
405285 |
T |
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Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 51 - 95
Target Start/End: Original strand, 3094292 - 3094336
Alignment:
| Q |
51 |
actatatggcattatcatggtggatgtgttgttggtagggttgtt |
95 |
Q |
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| T |
3094292 |
actatatggcattatcatggtggttgtcaagttggtagggttgtt |
3094336 |
T |
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