View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14042_high_13 (Length: 363)
Name: NF14042_high_13
Description: NF14042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14042_high_13 |
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Alignment Details
Target: chr7 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 11 - 347
Target Start/End: Complemental strand, 13298069 - 13297733
Alignment:
| Q |
11 |
cagagattgtagggaactgatgatgaggtggaaatggttccaaaattccttggtaagagggtggtgagataatgtttgtgtccataggttcagcaatgtt |
110 |
Q |
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| T |
13298069 |
cagagattgtagggaactgatgatgaggtggaaatggttccaaaattccttggtaagagggtggtgatataatatttgtgtccataggttcagcaatgtt |
13297970 |
T |
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| Q |
111 |
ggaaatttggcttgtgcttcctataagttgattattattattatcatcatttatttgaatatcagaaccttgttcttgagattgagagttctcagcttgc |
210 |
Q |
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| T |
13297969 |
ggaaatttggcttgtgcttcctataagttgattattattattatcatcatttatttgaatatcagaaccttgttcttgagattgagagttctcagcttgc |
13297870 |
T |
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| Q |
211 |
ttgatatgcttttggatccttgtcctccagtagttctttatctcattatcggttcttcccggtaaatgtttcgcgattttcgaccacctgcattggtgaa |
310 |
Q |
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| T |
13297869 |
ttgatatgcttttggatccttgtcctccagtagttctttatctcattatcggttcttcccggtagatgtttcgcaattttcgaccacctgcattggtgaa |
13297770 |
T |
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| Q |
311 |
tgattaatttgcaaaagaatgttggagatatataatt |
347 |
Q |
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| T |
13297769 |
tgattaatttgcaaaagaatgttggagatatataatt |
13297733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 229 - 304
Target Start/End: Complemental strand, 38720115 - 38720040
Alignment:
| Q |
229 |
cttgtcctccagtagttctttatctcattatcggttcttcccggtaaatgtttcgcgattttcgaccacctgcatt |
304 |
Q |
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| T |
38720115 |
cttgttctccaatagttctttatttcattgtcggttcttcccggtaattgttccgctattttagaccaccttcatt |
38720040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 228 - 299
Target Start/End: Original strand, 49848555 - 49848626
Alignment:
| Q |
228 |
ccttgtcctccagtagttctttatctcattatcggttcttcccggtaaatgtttcgcgattttcgaccacct |
299 |
Q |
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| T |
49848555 |
ccttgttctccaatagttctttatctcattatctgttcttcctggtaaatgctgagcaatttttgaccacct |
49848626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 272
Target Start/End: Original strand, 32447494 - 32447534
Alignment:
| Q |
232 |
gtcctccagtagttctttatctcattatcggttcttcccgg |
272 |
Q |
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| T |
32447494 |
gtcctccaatagttctttatctcattgtctgttcttcccgg |
32447534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 206 - 311
Target Start/End: Complemental strand, 972891 - 972786
Alignment:
| Q |
206 |
cttgcttgatatgcttttggatccttgtcctccagtagttctttatctcattatcggttcttcccggtaaatgtttcgcgattttcgaccacctgcattg |
305 |
Q |
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||||||| || |||||||| ||||| |||||||| | ||||| |||||||| || |||||||| || | ||| || || ||||| ||||||||||| || |
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| T |
972891 |
cttgcttaatgtgcttttgtatcctagtcctccaaaaattcttaatctcattgtcagttcttcctggaagatgctttgcaattttggaccacctgcaatg |
972792 |
T |
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| Q |
306 |
gtgaat |
311 |
Q |
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|||||| |
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| T |
972791 |
gtgaat |
972786 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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