View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14042_high_17 (Length: 318)

Name: NF14042_high_17
Description: NF14042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14042_high_17
NF14042_high_17
[»] chr3 (16 HSPs)
chr3 (18-172)||(8647478-8647631)
chr3 (200-309)||(51976761-51976871)
chr3 (200-309)||(36684906-36685016)
chr3 (200-309)||(8705713-8705823)
chr3 (200-309)||(9057600-9057710)
chr3 (200-309)||(45736467-45736577)
chr3 (200-306)||(4978417-4978524)
chr3 (203-276)||(38998911-38998984)
chr3 (203-309)||(37796609-37796716)
chr3 (203-266)||(20916413-20916476)
chr3 (203-266)||(20925375-20925438)
chr3 (219-309)||(47165345-47165436)
chr3 (200-272)||(49758956-49759028)
chr3 (210-267)||(32073607-32073664)
chr3 (204-266)||(10346527-10346589)
chr3 (204-265)||(27265803-27265864)
[»] chr5 (7 HSPs)
chr5 (200-309)||(41197356-41197466)
chr5 (200-309)||(30376427-30376537)
chr5 (205-309)||(36779403-36779507)
chr5 (203-308)||(34905579-34905685)
chr5 (258-309)||(12378608-12378660)
chr5 (206-300)||(29985435-29985530)
chr5 (203-256)||(34525-34578)
[»] chr2 (4 HSPs)
chr2 (200-309)||(29894321-29894431)
chr2 (200-309)||(24543214-24543324)
chr2 (202-309)||(36365043-36365151)
chr2 (203-259)||(12555410-12555466)
[»] chr1 (15 HSPs)
chr1 (200-309)||(11351597-11351707)
chr1 (200-309)||(21515206-21515314)
chr1 (203-302)||(2536489-2536589)
chr1 (202-309)||(6784281-6784389)
chr1 (203-309)||(44839857-44839964)
chr1 (200-268)||(20639591-20639659)
chr1 (204-266)||(3601265-3601327)
chr1 (203-276)||(51080706-51080779)
chr1 (204-266)||(2114361-2114423)
chr1 (229-309)||(32988886-32988965)
chr1 (205-290)||(39648376-39648462)
chr1 (204-266)||(17321880-17321942)
chr1 (210-267)||(26418788-26418845)
chr1 (210-267)||(32108435-32108492)
chr1 (204-266)||(12539121-12539183)
[»] chr4 (13 HSPs)
chr4 (202-309)||(43989258-43989366)
chr4 (203-309)||(19315890-19315997)
chr4 (203-304)||(1394129-1394232)
chr4 (217-309)||(43813171-43813264)
chr4 (200-246)||(5124644-5124690)
chr4 (204-266)||(9633063-9633125)
chr4 (204-266)||(35096913-35096975)
chr4 (210-267)||(13200849-13200906)
chr4 (210-267)||(47783000-47783057)
chr4 (204-239)||(17283592-17283627)
chr4 (204-266)||(1479275-1479337)
chr4 (204-266)||(6969614-6969676)
chr4 (212-264)||(1311155-1311207)
[»] chr8 (5 HSPs)
chr8 (200-309)||(18481234-18481344)
chr8 (203-309)||(26440810-26440917)
chr8 (203-309)||(7251110-7251217)
chr8 (203-276)||(11911398-11911471)
chr8 (200-276)||(32536160-32536236)
[»] chr7 (8 HSPs)
chr7 (200-309)||(23820524-23820634)
chr7 (203-309)||(21118399-21118505)
chr7 (223-309)||(24808771-24808855)
chr7 (207-311)||(40901803-40901908)
chr7 (204-259)||(12980735-12980790)
chr7 (208-266)||(20492489-20492547)
chr7 (210-267)||(29526837-29526894)
chr7 (210-266)||(10325110-10325166)
[»] chr6 (6 HSPs)
chr6 (203-309)||(4513076-4513183)
chr6 (200-309)||(942694-942804)
chr6 (204-276)||(19047092-19047164)
chr6 (204-307)||(13757503-13757607)
chr6 (210-267)||(15950809-15950866)
chr6 (203-309)||(12125820-12125927)
[»] scaffold0041 (1 HSPs)
scaffold0041 (207-311)||(48110-48215)


Alignment Details
Target: chr3 (Bit Score: 114; Significance: 8e-58; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 18 - 172
Target Start/End: Original strand, 8647478 - 8647631
Alignment:
Q  18 gtattttacacatttaagttaggacactagaagctactccttctgtattttattataagtcgttttattttccaatatttgttgtatatggnnnnnnnng 117  Q
    |||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||        |    
T  8647478 gtattttacacatttaagttgggacactagaagctactccttccgtattttattataagtcgttttattttccaatatttgttgtatatgg-aaaaaaag 8647576  T
Q  118 tttaaaacttgttatattcacaaatcacaatttagtgttaacatttaaaagaacc 172  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  8647577 tttaaaacttgttatattcacaattcacaatttagtgttaacatttaaaagaacc 8647631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 200 - 309
Target Start/End: Original strand, 51976761 - 51976871
Alignment:
Q  200 taattttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagctagggtagc-ccatctcatgctagctcccacgtt 298  Q
    |||||||||||||||| ||| |||||||||||||||||||||||||| ||||||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  51976761 taattttcagaactctcatgccgagttcaataggaggcaagccaatggggtcgctcatgaattagctagggtagctccatctcatgctagctcccacgtt 51976860  T
Q  299 tatgatgatgt 309  Q
    |||||||||||    
T  51976861 tatgatgatgt 51976871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 200 - 309
Target Start/End: Original strand, 36684906 - 36685016
Alignment:
Q  200 taattttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagctagggtag-cccatctcatgctagctcccacgtt 298  Q
    |||||||||||||||| ||||||||||||||||||||||||| |||| ||||||||| |||||||||||||||| |||||||||||||||||| ||||||    
T  36684906 taattttcagaactctcatgtcgagttcaataggaggcaagctaatggggtcgctcatgaattagctagggtagccccatctcatgctagctctcacgtt 36685005  T
Q  299 tatgatgatgt 309  Q
    |||||||||||    
T  36685006 tatgatgatgt 36685016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 200 - 309
Target Start/End: Original strand, 8705713 - 8705823
Alignment:
Q  200 taattttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagctagggtag-cccatctcatgctagctcccacgtt 298  Q
    |||||||||||||||| ||||||||||||||||||||||||| |||||||||||| | ||||||| |||||||| |||||||||| ||||||||||||||    
T  8705713 taattttcagaactctcatgtcgagttcaataggaggcaagctaatgaggtcgcttatgaattagttagggtagccccatctcatactagctcccacgtt 8705812  T
Q  299 tatgatgatgt 309  Q
    |||||||||||    
T  8705813 tatgatgatgt 8705823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 200 - 309
Target Start/End: Original strand, 9057600 - 9057710
Alignment:
Q  200 taattttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagctagggtag-cccatctcatgctagctcccacgtt 298  Q
    |||||||||||||||| ||||||||||||||||||||||||| |||||||||||| | ||||||| |||||||| |||||||||| ||||||||||||||    
T  9057600 taattttcagaactctcatgtcgagttcaataggaggcaagctaatgaggtcgcttatgaattagttagggtagccccatctcatactagctcccacgtt 9057699  T
Q  299 tatgatgatgt 309  Q
    |||||||||||    
T  9057700 tatgatgatgt 9057710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 200 - 309
Target Start/End: Original strand, 45736467 - 45736577
Alignment:
Q  200 taattttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagctagggtagcc-catctcatgctagctcccacgtt 298  Q
    |||||||||||||||| ||||||||||||||||||||||  |||||| |  |||||   ||||||||||||||||| |||||||||||| ||||||||||    
T  45736467 taattttcagaactctcatgtcgagttcaataggaggcagaccaatgggaacgctcgtaaattagctagggtagcctcatctcatgctaactcccacgtt 45736566  T
Q  299 tatgatgatgt 309  Q
    |||||||||||    
T  45736567 tatgatgatgt 45736577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 200 - 306
Target Start/End: Complemental strand, 4978524 - 4978417
Alignment:
Q  200 taattttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagctagggtagcc-catctcatgctagctcccacgtt 298  Q
    |||||||||||||||| |||||||||| |||| ||| |||||||||||||||| ||| ||||||||||| |||||| |||||||||||| ||| | | ||    
T  4978524 taattttcagaactctcatgtcgagtttaatatgagacaagccaatgaggtcgttcatgaattagctagcgtagccacatctcatgctaactcgcgcatt 4978425  T
Q  299 tatgatga 306  Q
    ||||||||    
T  4978424 tatgatga 4978417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 203 - 276
Target Start/End: Original strand, 38998911 - 38998984
Alignment:
Q  203 ttttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagctagggtagccc 276  Q
    |||||| |||||| |||||||||| |||||||||||||| |||| |||||||||||||||||| ||||||||||    
T  38998911 ttttcaaaactctcatgtcgagtttaataggaggcaagctaatggggtcgctcacgaattagcgagggtagccc 38998984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 203 - 309
Target Start/End: Original strand, 37796609 - 37796716
Alignment:
Q  203 ttttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagctagggtag-cccatctcatgctagctcccacgtttat 301  Q
    |||||| ||| || |||||||||| |||||||||||||| ||||||||||||||| ||||||| ||||||| ||||||| || ||||| ||  | |||||    
T  37796609 ttttcaaaacactcatgtcgagtttaataggaggcaagctaatgaggtcgctcacaaattagcgagggtagccccatctgatcctagccccaccatttat 37796708  T
Q  302 gatgatgt 309  Q
    ||||||||    
T  37796709 gatgatgt 37796716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 203 - 266
Target Start/End: Original strand, 20916413 - 20916476
Alignment:
Q  203 ttttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagct 266  Q
    ||||||||||||| |||| |||||||||||||||||||| ||||||||||||| ||| ||||||    
T  20916413 ttttcagaactcttatgttgagttcaataggaggcaagcgaatgaggtcgctcccgagttagct 20916476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 203 - 266
Target Start/End: Original strand, 20925375 - 20925438
Alignment:
Q  203 ttttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagct 266  Q
    ||||||||||||| |||| |||||||||||||||||||| ||||||||||||| ||| ||||||    
T  20925375 ttttcagaactcttatgttgagttcaataggaggcaagcgaatgaggtcgctcccgagttagct 20925438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 219 - 309
Target Start/End: Complemental strand, 47165436 - 47165345
Alignment:
Q  219 gtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagctagggtag-cccatctcatgctagctcccacgtttatgatgatgt 309  Q
    |||||||||||||||||||||| ||||| ||||||||  |||||||  | || || ||||||||||||||||||||||||||| | ||||||    
T  47165436 gtcgagttcaataggaggcaagtcaatggggtcgctcgtgaattaggaaaggcagccccatctcatgctagctcccacgtttacggtgatgt 47165345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 200 - 272
Target Start/End: Complemental strand, 49759028 - 49758956
Alignment:
Q  200 taattttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagctagggta 272  Q
    |||||||||||||||| |||||| |||||||||||||||||| |||| | ||||||| |||||  ||||||||    
T  49759028 taattttcagaactcttatgtcgggttcaataggaggcaagctaatgggatcgctcatgaattgactagggta 49758956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 210 - 267
Target Start/End: Complemental strand, 32073664 - 32073607
Alignment:
Q  210 aactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagcta 267  Q
    |||||| |||||||||| | |||||||||||| |||||||| ||||| ||||||||||    
T  32073664 aactctcatgtcgagtttactaggaggcaagcaaatgaggttgctcatgaattagcta 32073607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 204 - 266
Target Start/End: Complemental strand, 10346589 - 10346527
Alignment:
Q  204 tttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagct 266  Q
    |||||||||||  |||| |||||||| ||||||||||| |||  |||||||||||| ||||||    
T  10346589 tttcagaactcgcatgtagagttcaacaggaggcaagcgaatagggtcgctcacgagttagct 10346527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 265
Target Start/End: Original strand, 27265803 - 27265864
Alignment:
Q  204 tttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagc 265  Q
    ||||| |||||| |||| ||||| |||| ||| ||| | |||||||||||||||||||||||    
T  27265803 tttcaaaactctcatgttgagtttaataagagacaaactaatgaggtcgctcacgaattagc 27265864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 91; Significance: 4e-44; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 200 - 309
Target Start/End: Complemental strand, 41197466 - 41197356
Alignment:
Q  200 taattttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagctagggtag-cccatctcatgctagctcccacgtt 298  Q
    |||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |||||||||||||||||||||||||    
T  41197466 taattttcagaactcttatgtcgagttcaataggaggcaagccaatggggtcgctcatgaattagctagggtagccccatctcatgctagctcccacgtt 41197367  T
Q  299 tatgatgatgt 309  Q
    |||||||||||    
T  41197366 tatgatgatgt 41197356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 200 - 309
Target Start/End: Complemental strand, 30376537 - 30376427
Alignment:
Q  200 taattttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagctagggtagcc-catctcatgctagctcccacgtt 298  Q
    ||||||||| |||||| |||||||||||||||||||||||||||||  ||||||||| |||||||||| ||||||| ||||||||||||||||| |||||    
T  30376537 taattttcaaaactcttatgtcgagttcaataggaggcaagccaatagggtcgctcatgaattagctacggtagcctcatctcatgctagctccaacgtt 30376438  T
Q  299 tatgatgatgt 309  Q
    |||||||||||    
T  30376437 tatgatgatgt 30376427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 205 - 309
Target Start/End: Complemental strand, 36779507 - 36779403
Alignment:
Q  205 ttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagctagggtag-cccatctcatgctagctcccacgtttatga 303  Q
    ||||||||||| ||||||||| |||||||||||||||||||   ||| |||| | |||||||||||||| ||||||| ||| |||||||||||| |||||    
T  36779507 ttcagaactctcatgtcgagtacaataggaggcaagccaatagtgtcactcatggattagctagggtagtcccatct-atgttagctcccacgtctatga 36779409  T
Q  304 tgatgt 309  Q
    ||||||    
T  36779408 tgatgt 36779403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 203 - 308
Target Start/End: Original strand, 34905579 - 34905685
Alignment:
Q  203 ttttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagctagggtagccc-atctcatgctagctcccacgtttat 301  Q
    |||||||||||||  ||| |||||||||||||| ||| |||||||||||||||| ||||||||    ||||||| ||||||||||| |||||| |||||     
T  34905579 ttttcagaactcttgtgttgagttcaataggagacaaaccaatgaggtcgctcatgaattagcccaagtagcccgatctcatgctaactcccaagtttac 34905678  T
Q  302 gatgatg 308  Q
    |||||||    
T  34905679 gatgatg 34905685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 258 - 309
Target Start/End: Complemental strand, 12378660 - 12378608
Alignment:
Q  258 gaattagctagggtagccc-atctcatgctagctcccacgtttatgatgatgt 309  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  12378660 gaattagctagggtagccccatctcatgctagctcccacgtttatgatgatgt 12378608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 206 - 300
Target Start/End: Original strand, 29985435 - 29985530
Alignment:
Q  206 tcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagctagggtagccc-atctcatgctagctcccacgttta 300  Q
    |||||||||| |||||||||||||||| || ||||| |||||||||| |||||| ||||||  |||||||| |  ||||| |||||||||| ||||    
T  29985435 tcagaactctcatgtcgagttcaatagaagacaagctaatgaggtcgttcacgagttagctcaggtagccctaggtcatgttagctcccacattta 29985530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 203 - 256
Target Start/End: Original strand, 34525 - 34578
Alignment:
Q  203 ttttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctca 256  Q
    ||||||||||||| |||||||||| ||||||| ||||||||||  |||||||||    
T  34525 ttttcagaactctcatgtcgagtttaataggaagcaagccaatatggtcgctca 34578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 91; Significance: 4e-44; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 200 - 309
Target Start/End: Complemental strand, 29894431 - 29894321
Alignment:
Q  200 taattttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagctagggtag-cccatctcatgctagctcccacgtt 298  Q
    |||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |||||||||||||||||||||||||    
T  29894431 taattttcagaactctcatgtcgagttcaataggaggcaagccaatggggtcgctcatgaattagctagggtagccccatctcatgctagctcccacgtt 29894332  T
Q  299 tatgatgatgt 309  Q
    |||||||||||    
T  29894331 tatgatgatgt 29894321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 200 - 309
Target Start/End: Original strand, 24543214 - 24543324
Alignment:
Q  200 taattttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagctagggtag-cccatctcatgctagctcccacgtt 298  Q
    |||||||||||||||| |||||||||||||||||| ||||||||||| ||||||||| |||||||||||||||| |||||||||||||||||||||||||    
T  24543214 taattttcagaactctcatgtcgagttcaataggatgcaagccaatggggtcgctcatgaattagctagggtagccccatctcatgctagctcccacgtt 24543313  T
Q  299 tatgatgatgt 309  Q
    |||||||||||    
T  24543314 tatgatgatgt 24543324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 202 - 309
Target Start/End: Original strand, 36365043 - 36365151
Alignment:
Q  202 attttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagctagggtag-cccatctcatgctagctcccacgttta 300  Q
    |||||||||||||  |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||    
T  36365043 attttcagaactcccatgtcgagttcaataggaggcaagccaatgaggtcgctcatgaattagctagggtagccccatctcatgctagctcccacgttta 36365142  T
Q  301 tgatgatgt 309  Q
    || ||||||    
T  36365143 tggtgatgt 36365151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 259
Target Start/End: Complemental strand, 12555466 - 12555410
Alignment:
Q  203 ttttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacga 259  Q
    ||||||||||||| ||||| ||||||||||||||||||  |||| ||||||| ||||    
T  12555466 ttttcagaactctcatgtcaagttcaataggaggcaagttaatggggtcgcttacga 12555410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 87; Significance: 1e-41; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 200 - 309
Target Start/End: Complemental strand, 11351707 - 11351597
Alignment:
Q  200 taattttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagctagggtag-cccatctcatgctagctcccacgtt 298  Q
    |||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| ||||||||||||||||| |||||||    
T  11351707 taattttcagaactctcatgtcgagttcaataggaggcaagccaatggggtcgctcatgaattagctagggtagccccatctcatgctagcttccacgtt 11351608  T
Q  299 tatgatgatgt 309  Q
    |||||||||||    
T  11351607 tatgatgatgt 11351597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 200 - 309
Target Start/End: Original strand, 21515206 - 21515314
Alignment:
Q  200 taattttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagctagggtag-cccatctcatgctagctcccacgtt 298  Q
    |||||||||||||||  |||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |||||||||||||||||||||||||    
T  21515206 taattttcagaactc--atgtcgagttcaataggaggcaagccaatggggtcgctcatgaattagctagggtagccccatctcatgctagctcccacgtt 21515303  T
Q  299 tatgatgatgt 309  Q
    |||||||||||    
T  21515304 tatgatgatgt 21515314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 203 - 302
Target Start/End: Complemental strand, 2536589 - 2536489
Alignment:
Q  203 ttttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagctagggtag-cccatctcatgctagctcccacgtttat 301  Q
    ||||||||||||| |||||||||||||||||||||||||||||| ||||||||| ||||||| |||||||| ||||||||||||||||||||| ||||||    
T  2536589 ttttcagaactctcatgtcgagttcaataggaggcaagccaatggggtcgctcatgaattagttagggtagccccatctcatgctagctcccatgtttat 2536490  T
Q  302 g 302  Q
    |    
T  2536489 g 2536489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 202 - 309
Target Start/End: Original strand, 6784281 - 6784389
Alignment:
Q  202 attttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagctagggtagc-ccatctcatgctagctcccacgttta 300  Q
    |||||||||||||| |||||||||||||||||||||||||||||| ||||||| | |||||| |||||||||| ||||||||| |||||| |||||||||    
T  6784281 attttcagaactctcatgtcgagttcaataggaggcaagccaatggggtcgcttatgaattaactagggtagctccatctcatactagcttccacgttta 6784380  T
Q  301 tgatgatgt 309  Q
    |||| ||||    
T  6784381 tgataatgt 6784389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 203 - 309
Target Start/End: Complemental strand, 44839964 - 44839857
Alignment:
Q  203 ttttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagctagggtag-cccatctcatgctagctcccacgtttat 301  Q
    ||||||||||||| ||||||||||||||||||||||||  |||| ||||||||| || ||||||||||||| ||||||| ||||||||||| ||||||||    
T  44839964 ttttcagaactctcatgtcgagttcaataggaggcaagttaatggggtcgctcatgagttagctagggtagccccatctaatgctagctcctacgtttat 44839865  T
Q  302 gatgatgt 309  Q
    ||| ||||    
T  44839864 gataatgt 44839857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 200 - 268
Target Start/End: Original strand, 20639591 - 20639659
Alignment:
Q  200 taattttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagctag 268  Q
    |||||||||||||||| |||| |||||||||||||||||||||||||||||| |||| |||||||||||    
T  20639591 taattttcagaactctcatgttgagttcaataggaggcaagccaatgaggtcactcatgaattagctag 20639659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 204 - 266
Target Start/End: Complemental strand, 3601327 - 3601265
Alignment:
Q  204 tttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagct 266  Q
    |||||||||||| ||||||||||||||||||||||||| |||||||| |||||||| ||||||    
T  3601327 tttcagaactctcatgtcgagttcaataggaggcaagcgaatgaggttgctcacgagttagct 3601265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 203 - 276
Target Start/End: Complemental strand, 51080779 - 51080706
Alignment:
Q  203 ttttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagctagggtagccc 276  Q
    |||||| |||||| |||||||||| |||||||||||| | |||| ||||||||| |||||||| ||||||||||    
T  51080779 ttttcaaaactctcatgtcgagtttaataggaggcaatctaatggggtcgctcatgaattagcgagggtagccc 51080706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 204 - 266
Target Start/End: Original strand, 2114361 - 2114423
Alignment:
Q  204 tttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagct 266  Q
    |||||||||||| ||||||||||||| |||| | |||| |||| |||||||||||||||||||    
T  2114361 tttcagaactctcatgtcgagttcaacaggaaggaagcgaatggggtcgctcacgaattagct 2114423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 229 - 309
Target Start/End: Complemental strand, 32988965 - 32988886
Alignment:
Q  229 ataggaggcaagccaatgaggtcgctcacgaattagctagggtagccc-atctcatgctagctcccacgtttatgatgatgt 309  Q
    |||||||||||||||||    ||||||| ||||||| ||||||||||| |||||||||||||| || |||||||||||||||    
T  32988965 ataggaggcaagccaattt--tcgctcatgaattagttagggtagccccatctcatgctagcttccgcgtttatgatgatgt 32988886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 205 - 290
Target Start/End: Complemental strand, 39648462 - 39648376
Alignment:
Q  205 ttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagctagggtag-cccatctcatgctagct 290  Q
    |||||||||||  ||||||||| ||||| || ||||| ||| |||||||||| |||||||||  ||||| |||||||||||||||||    
T  39648462 ttcagaactctcgtgtcgagtttaatagaagtcaagctaattaggtcgctcatgaattagctcaggtagccccatctcatgctagct 39648376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 204 - 266
Target Start/End: Original strand, 17321880 - 17321942
Alignment:
Q  204 tttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagct 266  Q
    |||||||||||| ||||||||||||| ||||||||||| |||  ||| |||||||| ||||||    
T  17321880 tttcagaactctcatgtcgagttcaacaggaggcaagcaaatagggtagctcacgagttagct 17321942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 210 - 267
Target Start/End: Complemental strand, 26418845 - 26418788
Alignment:
Q  210 aactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagcta 267  Q
    |||||| |||||||||| | |||||||||||| |||||||| ||||| ||||||||||    
T  26418845 aactctcatgtcgagtttactaggaggcaagcaaatgaggttgctcatgaattagcta 26418788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 210 - 267
Target Start/End: Original strand, 32108435 - 32108492
Alignment:
Q  210 aactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagcta 267  Q
    |||||| |||||||||| | |||||||||||| |||||||| ||||| ||||||||||    
T  32108435 aactctcatgtcgagtttactaggaggcaagcaaatgaggttgctcatgaattagcta 32108492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 204 - 266
Target Start/End: Original strand, 12539121 - 12539183
Alignment:
Q  204 tttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagct 266  Q
    |||||||||||| ||||||||||||| ||||||||||| |||  | | |||||||| ||||||    
T  12539121 tttcagaactctcatgtcgagttcaacaggaggcaagcaaataggatagctcacgagttagct 12539183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 81; Significance: 4e-38; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 202 - 309
Target Start/End: Complemental strand, 43989366 - 43989258
Alignment:
Q  202 attttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagctagggtag-cccatctcatgctagctcccacgttta 300  Q
    ||||| ||||| || |||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |||||||||||||||||||||||||||    
T  43989366 atttttagaacgctcatgtcgagttcaataggaggcaagccaatgaggtcgctcatgaattagttagggtagccccatctcatgctagctcccacgttta 43989267  T
Q  301 tgatgatgt 309  Q
    |||||||||    
T  43989266 tgatgatgt 43989258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 203 - 309
Target Start/End: Complemental strand, 19315997 - 19315890
Alignment:
Q  203 ttttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagctagggtag-cccatctcatgctagctcccacgtttat 301  Q
    ||||||||||||| ||||||||||||||||||||||||||||||  |||| ||| ||||||||   ||||| |||| || ||| ||||||||||| ||||    
T  19315997 ttttcagaactctcatgtcgagttcaataggaggcaagccaatggagtcgttcatgaattagcacaggtagccccaccttatggtagctcccacgcttat 19315898  T
Q  302 gatgatgt 309  Q
    ||| ||||    
T  19315897 gattatgt 19315890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 203 - 304
Target Start/End: Original strand, 1394129 - 1394232
Alignment:
Q  203 ttttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagctagggtag--cccatctcatgctagctcccacgttta 300  Q
    ||||||||||||| ||||||||||||||||||||||||| |||| ||||| ||| ||||||||    ||||  ||||||| |||||||||||||| | ||    
T  1394129 ttttcagaactctcatgtcgagttcaataggaggcaagctaatggggtcgttcatgaattagcacaagtagtccccatctaatgctagctcccacatcta 1394228  T
Q  301 tgat 304  Q
    ||||    
T  1394229 tgat 1394232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 217 - 309
Target Start/End: Complemental strand, 43813264 - 43813171
Alignment:
Q  217 atgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagctagggtag-cccatctcatgctagctcccacgtttatgatgatgt 309  Q
    |||||||||||||||| || |||| ||||| ||||| ||| ||||||| |||||||| |||||||||| ||||||| | ||||| |||||||||    
T  43813264 atgtcgagttcaatagcagacaagtcaatggggtcgttcatgaattagttagggtagccccatctcatactagctctctcgtttttgatgatgt 43813171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 200 - 246
Target Start/End: Complemental strand, 5124690 - 5124644
Alignment:
Q  200 taattttcagaactctaatgtcgagttcaataggaggcaagccaatg 246  Q
    ||||||||||||||||||||||||||||||| |||||||||| ||||    
T  5124690 taattttcagaactctaatgtcgagttcaatcggaggcaagctaatg 5124644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 204 - 266
Target Start/End: Original strand, 9633063 - 9633125
Alignment:
Q  204 tttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagct 266  Q
    |||||||||||| ||||||||||||||||||||||||  |||| ||||| | |||| ||||||    
T  9633063 tttcagaactctcatgtcgagttcaataggaggcaagtgaatggggtcgattacgagttagct 9633125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 204 - 266
Target Start/End: Original strand, 35096913 - 35096975
Alignment:
Q  204 tttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagct 266  Q
    |||||||||||| |||||||||||||||| |||||||| |||  ||| |||||||| ||||||    
T  35096913 tttcagaactctcatgtcgagttcaatagaaggcaagcaaatagggttgctcacgagttagct 35096975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 210 - 267
Target Start/End: Original strand, 13200849 - 13200906
Alignment:
Q  210 aactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagcta 267  Q
    |||||| |||||||||||| |||||||||||| |||||||| ||||| || |||||||    
T  13200849 aactctcatgtcgagttcattaggaggcaagcaaatgaggttgctcatgagttagcta 13200906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 210 - 267
Target Start/End: Original strand, 47783000 - 47783057
Alignment:
Q  210 aactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagcta 267  Q
    |||||| |||||||||| | |||||||||||| |||||||| ||||| ||||||||||    
T  47783000 aactctcatgtcgagtttactaggaggcaagcaaatgaggttgctcatgaattagcta 47783057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 204 - 239
Target Start/End: Complemental strand, 17283627 - 17283592
Alignment:
Q  204 tttcagaactctaatgtcgagttcaataggaggcaa 239  Q
    |||||||||||| |||||||||||||||||||||||    
T  17283627 tttcagaactcttatgtcgagttcaataggaggcaa 17283592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 204 - 266
Target Start/End: Complemental strand, 1479337 - 1479275
Alignment:
Q  204 tttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagct 266  Q
    |||||||||||| || |||||||||||||||||||||  |||| |||| ||||| | ||||||    
T  1479337 tttcagaactctcatatcgagttcaataggaggcaagtaaatggggtcactcacaagttagct 1479275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 204 - 266
Target Start/End: Original strand, 6969614 - 6969676
Alignment:
Q  204 tttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagct 266  Q
    |||||||||||| ||||||| ||||||| |||| |||  |||| |||||||||||| ||||||    
T  6969614 tttcagaactctcatgtcgatttcaataagaggtaagtaaatggggtcgctcacgagttagct 6969676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 264
Target Start/End: Original strand, 1311155 - 1311207
Alignment:
Q  212 ctctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattag 264  Q
    |||| |||| ||||| ||||||||| ||| |||||||||||||||||| ||||    
T  1311155 ctctcatgttgagtttaataggaggtaagtcaatgaggtcgctcacgagttag 1311207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 75; Significance: 2e-34; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 200 - 309
Target Start/End: Original strand, 18481234 - 18481344
Alignment:
Q  200 taattttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagctagggtag-cccatctcatgctagctcccacgtt 298  Q
    |||||||||||||||| |||||||||||||||||||| ||| ||||| |||| ||||  ||||||||||||||| |||||||||||||||||||||||||    
T  18481234 taattttcagaactctcatgtcgagttcaataggaggtaagtcaatggggtcactcataaattagctagggtagccccatctcatgctagctcccacgtt 18481333  T
Q  299 tatgatgatgt 309  Q
    |||||||||||    
T  18481334 tatgatgatgt 18481344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 203 - 309
Target Start/End: Original strand, 26440810 - 26440917
Alignment:
Q  203 ttttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagctagggtag-cccatctcatgctagctcccacgtttat 301  Q
    |||| |||||||| ||||||||||||||||||||||||| |||| ||| ||||| || ||||||||||||| ||||||| |||||||||| |||| ||||    
T  26440810 tttttagaactctcatgtcgagttcaataggaggcaagctaatggggttgctcatgagttagctagggtagccccatctaatgctagctctcacgattat 26440909  T
Q  302 gatgatgt 309  Q
    ||| ||||    
T  26440910 gataatgt 26440917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 203 - 309
Target Start/End: Original strand, 7251110 - 7251217
Alignment:
Q  203 ttttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagctagggtag-cccatctcatgctagctcccacgtttat 301  Q
    ||||||||||||| ||||||||||||||||||||||| |||||| | || |||| | |||| ||| ||||| ||||||||||||||||| ||| | ||||    
T  7251110 ttttcagaactcttatgtcgagttcaataggaggcaaaccaatgggatcactcatgcattaactaaggtagccccatctcatgctagcttccatgattat 7251209  T
Q  302 gatgatgt 309  Q
    ||| ||||    
T  7251210 gataatgt 7251217  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 276
Target Start/End: Complemental strand, 11911471 - 11911398
Alignment:
Q  203 ttttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagctagggtagccc 276  Q
    |||||| |||||| |||||||||||||||||||| || | |||| |||| | ||||| |||||| ||| |||||    
T  11911471 ttttcaaaactctcatgtcgagttcaataggaggtaaacgaatggggtcccccacgagttagctcgggaagccc 11911398  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 200 - 276
Target Start/End: Complemental strand, 32536236 - 32536160
Alignment:
Q  200 taattttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagctagggtagccc 276  Q
    |||||||  ||||||| |||||||||||||| | |  ||||  |||| ||||||||  |||||||||||||||||||    
T  32536236 taattttatgaactcttatgtcgagttcaattgaaaacaagttaatggggtcgctcgtgaattagctagggtagccc 32536160  T

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Target: chr7 (Bit Score: 75; Significance: 2e-34; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 200 - 309
Target Start/End: Original strand, 23820524 - 23820634
Alignment:
Q  200 taattttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagctagggtag-cccatctcatgctagctcccacgtt 298  Q
    |||||||||||||||| || ||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||  ||||||||||||||||||||| ||    
T  23820524 taattttcagaactctcatatcgagttcaataggaggcaagccaatggggtcgctcatgaattagatagggtagatccatctcatgctagctcccacatt 23820623  T
Q  299 tatgatgatgt 309  Q
    |||||||||||    
T  23820624 tatgatgatgt 23820634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 203 - 309
Target Start/End: Original strand, 21118399 - 21118505
Alignment:
Q  203 ttttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagctagggtagc-ccatctcatgctagctcccacgtttat 301  Q
    ||||||||||||| ||||||||||||||||||||||||| ||||||||| |||| |  |||||||||||||| ||||||  |||||||||| ||||||||    
T  21118399 ttttcagaactctcatgtcgagttcaataggaggcaagctaatgaggtcactcatg-gttagctagggtagcaccatctattgctagctccaacgtttat 21118497  T
Q  302 gatgatgt 309  Q
    ||| ||||    
T  21118498 gataatgt 21118505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 223 - 309
Target Start/End: Complemental strand, 24808855 - 24808771
Alignment:
Q  223 agttcaataggaggcaagccaatgaggtcgctcacgaattagctagggtag-cccatctcatgctagctcccacgtttatgatgatgt 309  Q
    |||||||||||||||||||||||| || | |||| |||||||||||| ||| |||||||||||||||   ||||||||||||||||||    
T  24808855 agttcaataggaggcaagccaatggggccactcatgaattagctaggatagccccatctcatgctag---ccacgtttatgatgatgt 24808771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 207 - 311
Target Start/End: Complemental strand, 40901908 - 40901803
Alignment:
Q  207 cagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagctagggtagc-ccatctcatgctagctcccacgtttatgatg 305  Q
    ||||||||| |||||||||| |||||||||||| | |||  ||||||||| |||||| |   |||||| ||||||||||||||||||||  | |||||||    
T  40901908 cagaactctcatgtcgagttgaataggaggcaaactaatatggtcgctcatgaattaacacaggtagctccatctcatgctagctcccatatctatgatg 40901809  T
Q  306 atgtcc 311  Q
    ||||||    
T  40901808 atgtcc 40901803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 204 - 259
Target Start/End: Original strand, 12980735 - 12980790
Alignment:
Q  204 tttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacga 259  Q
    |||||||||||| ||||||||||||| ||||||||| | |||| ||||||||||||    
T  12980735 tttcagaactctcatgtcgagttcaacaggaggcaaacgaatggggtcgctcacga 12980790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 208 - 266
Target Start/End: Original strand, 20492489 - 20492547
Alignment:
Q  208 agaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagct 266  Q
    |||||||| || ||||||| |||||||||||||| |||  |||||||||||||||||||    
T  20492489 agaactctcatctcgagtttaataggaggcaagcgaatagggtcgctcacgaattagct 20492547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 210 - 267
Target Start/End: Original strand, 29526837 - 29526894
Alignment:
Q  210 aactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagcta 267  Q
    |||||| |||||||||| | |||||||||||| |||||||| ||||| ||||||||||    
T  29526837 aactctcatgtcgagtttactaggaggcaagcaaatgaggttgctcatgaattagcta 29526894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 210 - 266
Target Start/End: Complemental strand, 10325166 - 10325110
Alignment:
Q  210 aactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagct 266  Q
    |||||| |||||||||| |||||||||||| | |||||||||||||| || ||||||    
T  10325166 aactctcatgtcgagtttaataggaggcaaacgaatgaggtcgctcatgagttagct 10325110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 72; Significance: 9e-33; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 203 - 309
Target Start/End: Original strand, 4513076 - 4513183
Alignment:
Q  203 ttttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagctagggtag-cccatctcatgctagctcccacgtttat 301  Q
    ||||||||||||| |||||||||||||||||||||||||||||| ||||||| | |||||||||||||||| |||||||||| |||||||||| ||||||    
T  4513076 ttttcagaactctcatgtcgagttcaataggaggcaagccaatggggtcgctaatgaattagctagggtagccccatctcatactagctcccatgtttat 4513175  T
Q  302 gatgatgt 309  Q
    ||| ||||    
T  4513176 gataatgt 4513183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 200 - 309
Target Start/End: Original strand, 942694 - 942804
Alignment:
Q  200 taattttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagctagg-gtagcccatctcatgctagctcccacgtt 298  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  ||||||||||||   | |||||||||||||| ||||||||||    
T  942694 taattttcagaactctaatgtcgagttcaataggaggcaagccaatggggtcgctcgtgaattagctaggacaaccccatctcatgctatctcccacgtt 942793  T
Q  299 tatgatgatgt 309  Q
    || ||||||||    
T  942794 tacgatgatgt 942804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 204 - 276
Target Start/End: Original strand, 19047092 - 19047164
Alignment:
Q  204 tttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagctagggtagccc 276  Q
    ||||| |||||| |||||||||| |||||||||||||| |||| |||||||||||||||||| ||||||||||    
T  19047092 tttcaaaactctcatgtcgagtttaataggaggcaagctaatgtggtcgctcacgaattagcgagggtagccc 19047164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 204 - 307
Target Start/End: Complemental strand, 13757607 - 13757503
Alignment:
Q  204 tttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagctagggtagc-ccatctcatgctagctcccacgtttatg 302  Q
    ||||| |||||| |||| ||||| |||| || |||| | ||||||||||||||||||||||||||| |||| |||| | || |||||||| |  ||||||    
T  13757607 tttcaaaactctcatgttgagtttaataagaagcaaactaatgaggtcgctcacgaattagctaggatagctccatataatcctagctccaatttttatg 13757508  T
Q  303 atgat 307  Q
    |||||    
T  13757507 atgat 13757503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 210 - 267
Target Start/End: Original strand, 15950809 - 15950866
Alignment:
Q  210 aactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagcta 267  Q
    |||||| |||||||||| | |||||||||||| |||||||| ||||| ||||||||||    
T  15950809 aactctcatgtcgagtttactaggaggcaagcaaatgaggttgctcatgaattagcta 15950866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 203 - 309
Target Start/End: Original strand, 12125820 - 12125927
Alignment:
Q  203 ttttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagctagggtagcc-catctcatgctagctcccacgtttat 301  Q
    ||||||||| ||| ||||  | ||||||| ||||||||| ||||| || ||||| ||||||||    |||||| ||||||||||||||| ||| || |||    
T  12125820 ttttcagaattctcatgttcaattcaatatgaggcaagctaatgaagtggctcatgaattagcacatgtagcctcatctcatgctagcttccatgtctat 12125919  T
Q  302 gatgatgt 309  Q
    ||||||||    
T  12125920 gatgatgt 12125927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 207 - 311
Target Start/End: Original strand, 48110 - 48215
Alignment:
Q  207 cagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagctagggtagc-ccatctcatgctagctcccacgtttatgatg 305  Q
    ||||||||| |||||||||| |||||||||||| | |||  ||||||||| |||||| |   |||||| ||||||||||||||||||||  | |||||||    
T  48110 cagaactctcatgtcgagttgaataggaggcaaactaatatggtcgctcatgaattaacacaggtagctccatctcatgctagctcccatatctatgatg 48209  T
Q  306 atgtcc 311  Q
    ||||||    
T  48210 atgtcc 48215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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