View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14042_high_18 (Length: 315)
Name: NF14042_high_18
Description: NF14042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14042_high_18 |
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Alignment Details
Target: chr4 (Bit Score: 142; Significance: 2e-74; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 33 - 191
Target Start/End: Original strand, 2138086 - 2138250
Alignment:
| Q |
33 |
cccaacttcaaactccacgaacgccgttctaaaaaactccaactcaacgtgtcggaaaatcccatgatgttccaaaacaacaac------aacaacatgc |
126 |
Q |
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| T |
2138086 |
cccaacttcaaactccacgaacgccgttctaaaaaactccaactcaacgtgtcggaaaatcccatgatgttccaaaacaacaacaacaataacaacatgc |
2138185 |
T |
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| Q |
127 |
gaagtgttgttatggcttcaccagtttcaccattggaatattactatagcccaaaatcaccacat |
191 |
Q |
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| T |
2138186 |
gaagtgttgttatggcttcaccagtttcaccattggaatattactatagcccaaaatcaccacat |
2138250 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 235 - 306
Target Start/End: Original strand, 2138294 - 2138365
Alignment:
| Q |
235 |
gtttctatttgcacccctctcctagagcttctcagcaacaaccacctgcacttttacctctttttcctttgc |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2138294 |
gtttctatttgcacccctctcctagagcttctcagcaacaaccacctgcacttttacctctttttcctttgc |
2138365 |
T |
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