View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14042_high_25 (Length: 270)

Name: NF14042_high_25
Description: NF14042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14042_high_25
NF14042_high_25
[»] chr7 (26 HSPs)
chr7 (6-129)||(8610644-8610767)
chr7 (8-149)||(8602694-8602835)
chr7 (7-149)||(8591358-8591500)
chr7 (23-149)||(7876850-7876976)
chr7 (23-141)||(8647669-8647787)
chr7 (23-143)||(8582629-8582749)
chr7 (23-109)||(3148371-3148457)
chr7 (11-99)||(8660254-8660342)
chr7 (23-99)||(6790420-6790496)
chr7 (23-147)||(8635515-8635639)
chr7 (10-99)||(1302321-1302410)
chr7 (23-112)||(8577286-8577375)
chr7 (23-120)||(27829361-27829458)
chr7 (23-143)||(8572556-8572676)
chr7 (23-99)||(10493017-10493093)
chr7 (6-134)||(29576988-29577116)
chr7 (23-141)||(8668433-8668551)
chr7 (23-96)||(13332166-13332239)
chr7 (47-143)||(8568804-8568900)
chr7 (23-111)||(17261390-17261478)
chr7 (22-99)||(8104075-8104152)
chr7 (23-87)||(8655371-8655435)
chr7 (23-121)||(8546663-8546761)
chr7 (77-143)||(29581235-29581301)
chr7 (22-99)||(8016308-8016385)
chr7 (47-99)||(8584576-8584628)
[»] chr1 (3 HSPs)
chr1 (11-99)||(4677544-4677632)
chr1 (11-99)||(15596069-15596157)
chr1 (10-121)||(34465251-34465362)
[»] chr2 (9 HSPs)
chr2 (35-112)||(12244431-12244508)
chr2 (6-99)||(16656599-16656692)
chr2 (10-99)||(43626330-43626419)
chr2 (29-112)||(12257936-12258019)
chr2 (29-120)||(12235787-12235878)
chr2 (29-112)||(14705460-14705543)
chr2 (47-108)||(12000334-12000395)
chr2 (29-120)||(7543266-7543357)
chr2 (47-112)||(16661106-16661171)
[»] chr5 (2 HSPs)
chr5 (23-102)||(28220954-28221033)
chr5 (23-99)||(42554203-42554279)
[»] chr4 (5 HSPs)
chr4 (23-141)||(9323080-9323198)
chr4 (23-141)||(9377559-9377677)
chr4 (23-141)||(9335052-9335169)
chr4 (47-112)||(30776114-30776179)
chr4 (47-112)||(35133451-35133516)
[»] chr6 (1 HSPs)
chr6 (68-99)||(28911324-28911355)


Alignment Details
Target: chr7 (Bit Score: 96; Significance: 4e-47; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 6 - 129
Target Start/End: Complemental strand, 8610767 - 8610644
Alignment:
Q  6 gagcagagattatctataatgaacaaggaaacagaaccactccttcttttgttgctttctctgatgatcaaaggttgattggtgatgctgctaaaaacca 105  Q
    |||| ||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| ||    
T  8610767 gagctgagataatccataatgagcaaggaaacagaaccactccttcttttgttgctttctctggtgatcaaaggttgataggtgatgctgctaaaaatca 8610668  T
Q  106 agctgcttcaaacccagctaacac 129  Q
    ||||||||||||||||||||||||    
T  8610667 agctgcttcaaacccagctaacac 8610644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 8 - 149
Target Start/End: Complemental strand, 8602835 - 8602694
Alignment:
Q  8 gcagagattatctataatgaacaaggaaacagaaccactccttcttttgttgctttctctgatgatcaaaggttgattggtgatgctgctaaaaaccaag 107  Q
    |||||||||||  | ||||| |||||||||||||| ||||||||||||||||||||  |||||||| |||||||||| ||||||||||| ||||| || |    
T  8602835 gcagagattattcacaatgatcaaggaaacagaactactccttcttttgttgcttttactgatgataaaaggttgatcggtgatgctgccaaaaatcagg 8602736  T
Q  108 ctgcttcaaacccagctaacactatctatggtaatttatctt 149  Q
    ||||||| |||||||  |||||||||| ||||||||||||||    
T  8602735 ctgcttctaacccagtcaacactatctttggtaatttatctt 8602694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 7 - 149
Target Start/End: Complemental strand, 8591500 - 8591358
Alignment:
Q  7 agcagagattatctataatgaacaaggaaacagaaccactccttcttttgttgctttctctgatgatcaaaggttgattggtgatgctgctaaaaaccaa 106  Q
    ||||||||||||  | ||||| |||||||| ||||  || |||||||||||||||||  || |||||||||||||||||||||||||||| ||||||||     
T  8591500 agcagagattattcacaatgatcaaggaaatagaattacaccttcttttgttgcttttactaatgatcaaaggttgattggtgatgctgcaaaaaaccag 8591401  T
Q  107 gctgcttcaaacccagctaacactatctatggtaatttatctt 149  Q
    |||||||| |||||||| |||||| |||  |||||||||||||    
T  8591400 gctgcttctaacccagcaaacactgtcttcggtaatttatctt 8591358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 23 - 149
Target Start/End: Original strand, 7876850 - 7876976
Alignment:
Q  23 aatgaacaaggaaacagaaccactccttcttttgttgctttctctgatgatcaaaggttgattggtgatgctgctaaaaaccaagctgcttcaaacccag 122  Q
    ||||||||||| |||||||| || |||||||||||||||||| |  |||||||||||||||||||||||||||| ||||| || ||||| || ||||||     
T  7876850 aatgaacaaggcaacagaacaacaccttcttttgttgctttcacgaatgatcaaaggttgattggtgatgctgccaaaaatcaggctgcctctaacccat 7876949  T
Q  123 ctaacactatctatggtaatttatctt 149  Q
    | |||||| ||| |||||| |||||||    
T  7876950 ccaacactgtctttggtaacttatctt 7876976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 23 - 141
Target Start/End: Complemental strand, 8647787 - 8647669
Alignment:
Q  23 aatgaacaaggaaacagaaccactccttcttttgttgctttctctgatgatcaaaggttgattggtgatgctgctaaaaaccaagctgcttcaaacccag 122  Q
    ||||| |||||||||||||| || |||||||||||||||||| | |||||||||||||||||||||||||| |||||||| || |||||||| |||||      
T  8647787 aatgatcaaggaaacagaactacaccttcttttgttgctttcaccgatgatcaaaggttgattggtgatgccgctaaaaatcaggctgcttctaacccta 8647688  T
Q  123 ctaacactatctatggtaa 141  Q
    | |||||| ||| ||||||    
T  8647687 ccaacactgtctttggtaa 8647669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 23 - 143
Target Start/End: Complemental strand, 8582749 - 8582629
Alignment:
Q  23 aatgaacaaggaaacagaaccactccttcttttgttgctttctctgatgatcaaaggttgattggtgatgctgctaaaaaccaagctgcttcaaacccag 122  Q
    ||||| |||||||||| ||| || ||||||| |||||||||  || ||  |||||| ||||||||||||||||| ||||| ||||||||||| ||||||     
T  8582749 aatgatcaaggaaacaaaacaacaccttcttgtgttgcttttactaattctcaaagattgattggtgatgctgccaaaaatcaagctgcttctaacccaa 8582650  T
Q  123 ctaacactatctatggtaatt 143  Q
    | |||||||||||||||||||    
T  8582649 ccaacactatctatggtaatt 8582629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 23 - 109
Target Start/End: Complemental strand, 3148457 - 3148371
Alignment:
Q  23 aatgaacaaggaaacagaaccactccttcttttgttgctttctctgatgatcaaaggttgattggtgatgctgctaaaaaccaagct 109  Q
    ||||| ||||| |||| |||||| |||||||||||||||||| ||||||||||||||||| |||||||||||||||| || ||||||    
T  3148457 aatgaccaaggcaacaaaaccacaccttcttttgttgctttcactgatgatcaaaggttggttggtgatgctgctaagaatcaagct 3148371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 11 - 99
Target Start/End: Complemental strand, 8660342 - 8660254
Alignment:
Q  11 gagattatctataatgaacaaggaaacagaaccactccttcttttgttgctttctctgatgatcaaaggttgattggtgatgctgctaa 99  Q
    ||||| ||||| || || |||||||||| ||| || ||||| |||||||||||| |||| |||||||||||||||||||||||||||||    
T  8660342 gagatcatctacaacgaccaaggaaacaaaacaacaccttcatttgttgctttcactgacgatcaaaggttgattggtgatgctgctaa 8660254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 23 - 99
Target Start/End: Complemental strand, 6790496 - 6790420
Alignment:
Q  23 aatgaacaaggaaacagaaccactccttcttttgttgctttctctgatgatcaaaggttgattggtgatgctgctaa 99  Q
    ||||| ||||| |||| |||||| |||||||||||||||||| | ||||| ||||||||||| ||||||||||||||    
T  6790496 aatgaccaaggtaacaaaaccacaccttcttttgttgctttcaccgatgaccaaaggttgatcggtgatgctgctaa 6790420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 23 - 147
Target Start/End: Original strand, 8635515 - 8635639
Alignment:
Q  23 aatgaacaaggaaacagaaccactccttcttttgttgctttctctgatgatcaaaggttgattggtgatgctgctaaaaaccaagctgcttcaaacccag 122  Q
    ||||| ||||| ||||||| ||| ||||||| |||||||||| |||| |  ||||||||||||||||||||||| |||||||| ||| | || ||||||     
T  8635515 aatgagcaagggaacagaatcacaccttcttgtgttgctttcactgacgcacaaaggttgattggtgatgctgccaaaaaccaggcttcctctaacccat 8635614  T
Q  123 ctaacactatctatggtaatttatc 147  Q
    | || ||| ||| |||||| |||||    
T  8635615 ccaatactgtctttggtaacttatc 8635639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 10 - 99
Target Start/End: Complemental strand, 1302410 - 1302321
Alignment:
Q  10 agagattatctataatgaacaaggaaacagaaccactccttcttttgttgctttctctgatgatcaaaggttgattggtgatgctgctaa 99  Q
    |||||| ||||| || || ||||| |||| ||| || || ||||||||||||||| | ||||||||||||||||| ||||||||||||||    
T  1302410 agagatcatctacaacgaccaaggcaacaaaacaacaccgtcttttgttgctttcaccgatgatcaaaggttgatcggtgatgctgctaa 1302321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 23 - 112
Target Start/End: Complemental strand, 8577375 - 8577286
Alignment:
Q  23 aatgaacaaggaaacagaaccactccttcttttgttgctttctctgatgatcaaaggttgattggtgatgctgctaaaaaccaagctgct 112  Q
    ||||| ||||||||||||||||||||||||| |||||||||  |  ||  |||||| |||||||| |||||||| ||||| |||||||||    
T  8577375 aatgatcaaggaaacagaaccactccttcttgtgttgcttttaccaattctcaaagattgattggcgatgctgccaaaaatcaagctgct 8577286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 23 - 120
Target Start/End: Original strand, 27829361 - 27829458
Alignment:
Q  23 aatgaacaaggaaacagaaccactccttcttttgttgctttctctgatgatcaaaggttgattggtgatgctgctaaaaaccaagctgcttcaaaccc 120  Q
    ||||||||||| ||||  || || ||||||| |||||||||| | ||  | || ||||||||||||||||||||||| |||||||||||||| |||||    
T  27829361 aatgaacaaggcaacaagacaacaccttcttgtgttgctttcacggacaaacagaggttgattggtgatgctgctaagaaccaagctgcttccaaccc 27829458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 23 - 143
Target Start/End: Complemental strand, 8572676 - 8572556
Alignment:
Q  23 aatgaacaaggaaacagaaccactccttcttttgttgctttctctgatgatcaaaggttgattggtgatgctgctaaaaaccaagctgcttcaaacccag 122  Q
    ||||| |||||||||||||| ||||| |||| |||||||||  || ||  |||||| ||||| ||||||||||| ||||| ||||||||| | || |||     
T  8572676 aatgaccaaggaaacagaacaactccctcttgtgttgcttttactaattctcaaagattgatcggtgatgctgccaaaaatcaagctgctactaatccat 8572577  T
Q  123 ctaacactatctatggtaatt 143  Q
    | || ||||||| ||||||||    
T  8572576 ccaatactatctttggtaatt 8572556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 23 - 99
Target Start/End: Original strand, 10493017 - 10493093
Alignment:
Q  23 aatgaacaaggaaacagaaccactccttcttttgttgctttctctgatgatcaaaggttgattggtgatgctgctaa 99  Q
    ||||| |||||||| ||||| || ||||||||||||||||||    |||||||||||||||| ||||||||||||||    
T  10493017 aatgatcaaggaaatagaactacaccttcttttgttgctttcaacaatgatcaaaggttgatcggtgatgctgctaa 10493093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 6 - 134
Target Start/End: Original strand, 29576988 - 29577116
Alignment:
Q  6 gagcagagattatctataatgaacaaggaaacagaaccactccttcttttgttgctttctctgatgatcaaaggttgattggtgatgctgctaaaaacca 105  Q
    |||| ||||| ||| | ||||| ||||| || |||||||| |||||| |||| |||||| |||||   | |||||| |||||| ||||||||||||| ||    
T  29576988 gagctgagatcatccacaatgatcaaggcaatagaaccacaccttctgttgtagctttcactgattcactaaggttaattggtaatgctgctaaaaatca 29577087  T
Q  106 agctgcttcaaacccagctaacactatct 134  Q
     ||||| ||||||||| | ||||||||||    
T  29577088 ggctgcctcaaacccaaccaacactatct 29577116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 23 - 141
Target Start/End: Complemental strand, 8668551 - 8668433
Alignment:
Q  23 aatgaacaaggaaacagaaccactccttcttttgttgctttctctgatgatcaaaggttgattggtgatgctgctaaaaaccaagctgcttcaaacccag 122  Q
    ||||| ||||||||| |||  || ||||||||||||||||||    |||| |||||||||||||| ||||||||||| || ||| ||||| | ||||| |    
T  8668551 aatgatcaaggaaaccgaataacaccttcttttgttgctttcaacaatgaacaaaggttgattggcgatgctgctaagaatcaatctgctactaaccctg 8668452  T
Q  123 ctaacactatctatggtaa 141  Q
      |||||||||| ||||||    
T  8668451 aaaacactatctttggtaa 8668433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 96
Target Start/End: Original strand, 13332166 - 13332239
Alignment:
Q  23 aatgaacaaggaaacagaaccactccttcttttgttgctttctctgatgatcaaaggttgattggtgatgctgc 96  Q
    ||||| |||||||| ||||| || ||||||||||||||||||    |||||||||| |||||||||||||||||    
T  13332166 aatgatcaaggaaatagaactacaccttcttttgttgctttcaacaatgatcaaagattgattggtgatgctgc 13332239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 47 - 143
Target Start/End: Complemental strand, 8568900 - 8568804
Alignment:
Q  47 ccttcttttgttgctttctctgatgatcaaaggttgattggtgatgctgctaaaaaccaagctgcttcaaacccagctaacactatctatggtaatt 143  Q
    ||||||| |||||||||| || |   |||||| ||||||||||||||||| ||||| ||||||||||| || ||| | ||||||| || ||||||||    
T  8568900 ccttcttgtgttgctttcactaaatctcaaagattgattggtgatgctgccaaaaatcaagctgcttctaatccaaccaacactacctttggtaatt 8568804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 23 - 111
Target Start/End: Complemental strand, 17261478 - 17261390
Alignment:
Q  23 aatgaacaaggaaacagaaccactccttcttttgttgctttctctgatgatcaaaggttgattggtgatgctgctaaaaaccaagctgc 111  Q
    ||||| |||||||||| ||  ||||||||||||||||||||  || | ||| |||||||||| |||||||| ||||| || ||||||||    
T  17261478 aatgatcaaggaaacaaaattactccttcttttgttgcttttgctaaagatgaaaggttgatcggtgatgccgctaagaatcaagctgc 17261390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 22 - 99
Target Start/End: Complemental strand, 8104152 - 8104075
Alignment:
Q  22 taatgaacaaggaaacagaaccactccttcttttgttgctttctctgatgatcaaaggttgattggtgatgctgctaa 99  Q
    |||||| ||||| |||||||| || || |||| |||||||||| |||||  | |||||||||| ||||||||||||||    
T  8104152 taatgatcaagggaacagaacgacaccgtcttatgttgctttcactgatagtgaaaggttgatcggtgatgctgctaa 8104075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 87
Target Start/End: Complemental strand, 8655435 - 8655371
Alignment:
Q  23 aatgaacaaggaaacagaaccactccttcttttgttgctttctctgatgatcaaaggttgattgg 87  Q
    ||||| ||||| || ||||| || |||||| ||||||||||| ||||| ||||||||||||||||    
T  8655435 aatgatcaaggcaatagaactacaccttctgttgttgctttcactgattatcaaaggttgattgg 8655371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 121
Target Start/End: Complemental strand, 8546761 - 8546663
Alignment:
Q  23 aatgaacaaggaaacagaaccactccttcttttgttgctttctctgatgatcaaaggttgattggtgatgctgctaaaaaccaagctgcttcaaaccca 121  Q
    ||||| |||||||||| ||| || ||||||| |||||||||| |  ||   |||||| |||||||||||||||| ||||| || ||| |||| ||||||    
T  8546761 aatgatcaaggaaacaaaacaacaccttcttgtgttgctttcacaaattcccaaaggctgattggtgatgctgccaaaaatcaggcttcttctaaccca 8546663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 143
Target Start/End: Original strand, 29581235 - 29581301
Alignment:
Q  77 aggttgattggtgatgctgctaaaaaccaagctgcttcaaacccagctaacactatctatggtaatt 143  Q
    ||||||||| || ||||||||||||| || |||||  |||||||| | |||||||||| ||||||||    
T  29581235 aggttgattagtaatgctgctaaaaatcaggctgccgcaaacccaacaaacactatctttggtaatt 29581301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 22 - 99
Target Start/End: Original strand, 8016308 - 8016385
Alignment:
Q  22 taatgaacaaggaaacagaaccactccttcttttgttgctttctctgatgatcaaaggttgattggtgatgctgctaa 99  Q
    |||||| ||||| ||| |||| || || |||| |||||||||| |||||  | |||||||||| ||||||||||||||    
T  8016308 taatgatcaagggaaccgaacgacgccgtcttatgttgctttcactgatagtgaaaggttgatcggtgatgctgctaa 8016385  T

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Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 99
Target Start/End: Original strand, 8584576 - 8584628
Alignment:
Q  47 ccttcttttgttgctttctctgatgatcaaaggttgattggtgatgctgctaa 99  Q
    ||||| |||||||||||  | ||||||||||||||| |||||| |||||||||    
T  8584576 ccttcctttgttgcttttaccgatgatcaaaggttggttggtggtgctgctaa 8584628  T

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Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 11 - 99
Target Start/End: Original strand, 4677544 - 4677632
Alignment:
Q  11 gagattatctataatgaacaaggaaacagaaccactccttcttttgttgctttctctgatgatcaaaggttgattggtgatgctgctaa 99  Q
    |||||||| || ||||||||||| |||| ||| || |||||||||||||||||  ||||||||||||||||||||||| ||||||||||    
T  4677544 gagattatttacaatgaacaaggcaacaaaacaacaccttcttttgttgcttttactgatgatcaaaggttgattggtaatgctgctaa 4677632  T

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Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 11 - 99
Target Start/End: Complemental strand, 15596157 - 15596069
Alignment:
Q  11 gagattatctataatgaacaaggaaacagaaccactccttcttttgttgctttctctgatgatcaaaggttgattggtgatgctgctaa 99  Q
    ||||||||| | ||||| |||||||||||||  || |||||||||||| ||||| || |||||||||||||||||||||||||||||||    
T  15596157 gagattatccacaatgaccaaggaaacagaattacaccttcttttgtttctttcactaatgatcaaaggttgattggtgatgctgctaa 15596069  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 10 - 121
Target Start/End: Original strand, 34465251 - 34465362
Alignment:
Q  10 agagattatctataatgaacaaggaaacagaaccactccttcttttgttgctttctctgatgatcaaaggttgattggtgatgctgctaaaaaccaagct 109  Q
    |||||||||  | ||||| ||||| |||| |||||| |||||||||||||||||  || |||||||||| ||||| ||| |||||||||| || ||| ||    
T  34465251 agagattattgacaatgaccaaggtaacacaaccacaccttcttttgttgcttttactcatgatcaaagattgatcggtaatgctgctaagaatcaaact 34465350  T
Q  110 gcttcaaaccca 121  Q
    ||| | ||||||    
T  34465351 gctaccaaccca 34465362  T

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Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 35 - 112
Target Start/End: Original strand, 12244431 - 12244508
Alignment:
Q  35 aacagaaccactccttcttttgttgctttctctgatgatcaaaggttgattggtgatgctgctaaaaaccaagctgct 112  Q
    |||||||| || ||||||| |||||||||| |||| ||||||||||| |||||||||||||||||||| |||||||||    
T  12244431 aacagaacaacaccttcttgtgttgctttcactgaagatcaaaggtttattggtgatgctgctaaaaatcaagctgct 12244508  T

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Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 6 - 99
Target Start/End: Original strand, 16656599 - 16656692
Alignment:
Q  6 gagcagagattatctataatgaacaaggaaacagaaccactccttcttttgttgctttctctgatgatcaaaggttgattggtgatgctgctaa 99  Q
    |||||||||| ||  | ||||| || ||||||||||| || |||||||||||||||||| || |||||||||||||||| ||||||||||||||    
T  16656599 gagcagagatcatacacaatgaccagggaaacagaacaacaccttcttttgttgctttcactcatgatcaaaggttgatcggtgatgctgctaa 16656692  T

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Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 10 - 99
Target Start/End: Complemental strand, 43626419 - 43626330
Alignment:
Q  10 agagattatctataatgaacaaggaaacagaaccactccttcttttgttgctttctctgatgatcaaaggttgattggtgatgctgctaa 99  Q
    |||||||||| | ||||| |||||||||||||| || |||||||||||| ||||| || | || ||||||||||||||||||||||||||    
T  43626419 agagattatccacaatgaccaaggaaacagaactacaccttcttttgtttctttcactaaggaccaaaggttgattggtgatgctgctaa 43626330  T

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Target: chr2; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 29 - 112
Target Start/End: Original strand, 12257936 - 12258019
Alignment:
Q  29 caaggaaacagaaccactccttcttttgttgctttctctgatgatcaaaggttgattggtgatgctgctaaaaaccaagctgct 112  Q
    |||||||||||||| || ||||||| |||||||||  || | ||||||||||||||||||||||||||||| || |||||||||    
T  12257936 caaggaaacagaacaacgccttcttgtgttgcttttactaaagatcaaaggttgattggtgatgctgctaagaatcaagctgct 12258019  T

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Target: chr2; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 29 - 120
Target Start/End: Complemental strand, 12235878 - 12235787
Alignment:
Q  29 caaggaaacagaaccactccttcttttgttgctttctctgatgatcaaaggttgattggtgatgctgctaaaaaccaagctgcttcaaaccc 120  Q
    ||||| || ||||| || |||||||||||||||||| | ||  |||| ||||||||||||||||||||||| || ||||||||||| |||||    
T  12235878 caaggcaatagaacaaccccttcttttgttgctttcaccgaaaatcagaggttgattggtgatgctgctaagaatcaagctgcttccaaccc 12235787  T

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Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 29 - 112
Target Start/End: Complemental strand, 14705543 - 14705460
Alignment:
Q  29 caaggaaacagaaccactccttcttttgttgctttctctgatgatcaaaggttgattggtgatgctgctaaaaaccaagctgct 112  Q
    ||||| || ||||| ||||||||||||||||||||| | ||  ||||  |||||||||||||||||||||| || |||||||||    
T  14705543 caaggcaatagaacaactccttcttttgttgctttcaccgaaaatcagcggttgattggtgatgctgctaagaatcaagctgct 14705460  T

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Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 47 - 108
Target Start/End: Complemental strand, 12000395 - 12000334
Alignment:
Q  47 ccttcttttgttgctttctctgatgatcaaaggttgattggtgatgctgctaaaaaccaagc 108  Q
    ||||||| |||||||||| ||||  ||||||||||  |||||||||||||||||||||||||    
T  12000395 ccttcttgtgttgctttcactgaaaatcaaaggtttgttggtgatgctgctaaaaaccaagc 12000334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 120
Target Start/End: Complemental strand, 7543357 - 7543266
Alignment:
Q  29 caaggaaacagaaccactccttcttttgttgctttctctgatgatcaaaggttgattggtgatgctgctaaaaaccaagctgcttcaaaccc 120  Q
    ||||| |||||||| || |||||||||||||||||| | ||  |||| |||||||| ||||||  |||||| || ||||||||||| |||||    
T  7543357 caaggcaacagaacaacaccttcttttgttgctttcaccgaaaatcagaggttgatcggtgataatgctaagaatcaagctgcttccaaccc 7543266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 47 - 112
Target Start/End: Original strand, 16661106 - 16661171
Alignment:
Q  47 ccttcttttgttgctttctctgatgatcaaaggttgattggtgatgctgctaaaaaccaagctgct 112  Q
    |||||||||||||||||  |||||| |||||||||| | |||| |||||||||  | |||||||||    
T  16661106 ccttcttttgttgcttttactgatgctcaaaggttggtcggtggtgctgctaaggatcaagctgct 16661171  T

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Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 23 - 102
Target Start/End: Complemental strand, 28221033 - 28220954
Alignment:
Q  23 aatgaacaaggaaacagaaccactccttcttttgttgctttctctgatgatcaaaggttgattggtgatgctgctaaaaa 102  Q
    ||||| ||||| |||| ||| ||||||||||||||||||||| | |||||| ||||||||||||| ||||||||||||||    
T  28221033 aatgatcaaggcaacaaaacaactccttcttttgttgctttcaccgatgatgaaaggttgattggcgatgctgctaaaaa 28220954  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 23 - 99
Target Start/End: Original strand, 42554203 - 42554279
Alignment:
Q  23 aatgaacaaggaaacagaaccactccttcttttgttgctttctctgatgatcaaaggttgattggtgatgctgctaa 99  Q
    ||||| ||||| |||| ||| || |||||||||||||||||  || || || |||||||||||||||||||||||||    
T  42554203 aatgatcaaggcaacaaaacaacaccttcttttgttgcttttactcatcatgaaaggttgattggtgatgctgctaa 42554279  T

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Target: chr4 (Bit Score: 47; Significance: 7e-18; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 23 - 141
Target Start/End: Original strand, 9323080 - 9323198
Alignment:
Q  23 aatgaacaaggaaacagaaccactccttcttttgttgctttctctgatgatcaaaggttgattggtgatgctgctaaaaaccaagctgcttcaaacccag 122  Q
    ||||| ||||||||| |||| || ||||||||||||||||||    |||| |||||||||||||||||||||||||| || ||| ||||| | ||||| |    
T  9323080 aatgatcaaggaaaccgaacaacaccttcttttgttgctttcaacaatgagcaaaggttgattggtgatgctgctaagaatcaatctgctactaaccctg 9323179  T
Q  123 ctaacactatctatggtaa 141  Q
      |||||||||| ||||||    
T  9323180 aaaacactatctttggtaa 9323198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 23 - 141
Target Start/End: Original strand, 9377559 - 9377677
Alignment:
Q  23 aatgaacaaggaaacagaaccactccttcttttgttgctttctctgatgatcaaaggttgattggtgatgctgctaaaaaccaagctgcttcaaacccag 122  Q
    ||||| ||||||||| |||| || ||||||||||||||||||    |||| |||||||||||||||||||||||||| || ||| ||||| | ||||| |    
T  9377559 aatgatcaaggaaaccgaacaacaccttcttttgttgctttcaacaatgagcaaaggttgattggtgatgctgctaagaatcaatctgctactaaccctg 9377658  T
Q  123 ctaacactatctatggtaa 141  Q
      |||||||||| ||||||    
T  9377659 aaaacactatctttggtaa 9377677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 23 - 141
Target Start/End: Original strand, 9335052 - 9335169
Alignment:
Q  23 aatgaacaaggaaacagaaccactccttcttttgttgctttctctgatgatcaaaggttgattggtgatgctgctaaaaaccaagctgcttcaaacccag 122  Q
    ||||| ||||||||| |||| || ||||||||||||||||||    |||| |||||||||| ||||||||||||||| || ||| ||||| | ||||| |    
T  9335052 aatgatcaaggaaaccgaacaacaccttcttttgttgctttcaacaatgagcaaaggttga-tggtgatgctgctaagaatcaatctgctactaaccctg 9335150  T
Q  123 ctaacactatctatggtaa 141  Q
      |||||||||| ||||||    
T  9335151 aaaacactatctttggtaa 9335169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 47 - 112
Target Start/End: Complemental strand, 30776179 - 30776114
Alignment:
Q  47 ccttcttttgttgctttctctgatgatcaaaggttgattggtgatgctgctaaaaaccaagctgct 112  Q
    |||||||||||||||||| |||||| |||||||||| | |||| |||||||||  |||| ||||||    
T  30776179 ccttcttttgttgctttcactgatggtcaaaggttggtcggtgctgctgctaaggaccaggctgct 30776114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 47 - 112
Target Start/End: Complemental strand, 35133516 - 35133451
Alignment:
Q  47 ccttcttttgttgctttctctgatgatcaaaggttgattggtgatgctgctaaaaaccaagctgct 112  Q
    ||||||| | |||||||| || | |||||||||||||| |||||||||||||| || |||||||||    
T  35133516 ccttcttgtattgctttcactaaggatcaaaggttgatcggtgatgctgctaagaatcaagctgct 35133451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 68 - 99
Target Start/End: Complemental strand, 28911355 - 28911324
Alignment:
Q  68 gatgatcaaaggttgattggtgatgctgctaa 99  Q
    ||||||||||||||||||||||||||||||||    
T  28911355 gatgatcaaaggttgattggtgatgctgctaa 28911324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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