View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14042_high_26 (Length: 267)
Name: NF14042_high_26
Description: NF14042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14042_high_26 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 26710147 - 26709893
Alignment:
| Q |
1 |
cttgcgttattagtgcctatacaagaaatcttctatgtgagaatgaataattttggtaaccatatatgattggcattgacacattgtcttcttcatcgtc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26710147 |
cttgcgttattagtgcctatacaagaaatcttctatgtgagaatgaataattttggtaaccaaatatgattggcattgacacattgtcttcttcatcgtc |
26710048 |
T |
|
| Q |
101 |
atagtaacatgttataataaagatataagatcaaaatgttatgctttagtggattttaatgctagtattgaaaatggaagagaataatatttaagttggt |
200 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26710047 |
ataggaacatgttataataaagatataagatcaaaatgttatgctttagtggattttaatgctagtattgaaaatggaagagaataatatttaagttggt |
26709948 |
T |
|
| Q |
201 |
ttcatagtaaggttggcaagacaattttgtggttttacgaagctatttgtatatt |
255 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
26709947 |
ttcatagtaaggtttgcaagacaattttgtggttttaagaagctatttgtatatt |
26709893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University