View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14042_high_27 (Length: 266)
Name: NF14042_high_27
Description: NF14042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14042_high_27 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 7 - 266
Target Start/End: Original strand, 1967570 - 1967830
Alignment:
| Q |
7 |
atatagacacacacaataatggaaatgagatgttctccatttttctaatgtgagagataaacacaagtaaaatgctaatgagacattttttaaattattg |
106 |
Q |
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| T |
1967570 |
atatagacacacacaataatggaaatgagatgttctccatttttctaatgtgagagataaacacaagtaaaatgctaatgagacattttttaaattattg |
1967669 |
T |
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| Q |
107 |
ttataaatagattccatcaatcttccatttgtatatatttctctcctaaatggagctacctacttcttttgaaaaaac-aaaagcaacttgaccaataat |
205 |
Q |
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| T |
1967670 |
ttataaatagattccatcaatcttccatttgtatatatttctctcctaaatggagctacctatttcttttgaaaaaacaaaaagcaacttgacaaataat |
1967769 |
T |
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| Q |
206 |
gacattattatttaaggatatgttactatcgtataatatgatatttgggataaattgttac |
266 |
Q |
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| T |
1967770 |
gacattattatttaaggatatgttactatcatataatatgatatttgggataaattgttac |
1967830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 66 - 266
Target Start/End: Complemental strand, 2009335 - 2009134
Alignment:
| Q |
66 |
aacacaagtaaaatgctaatgagacattttttaaattattgttataaatagattccatcaatcttccatttgtatatatttctctcctaaatggagctac |
165 |
Q |
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| T |
2009335 |
aacacaagcaaaatgctaatgagacattttttaaattattgttataaatagattccatcaatcttccatttgtatatatttctctcctaaatggagctac |
2009236 |
T |
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| Q |
166 |
ctacttcttttgaaaaaac-aaaagcaacttgaccaataatgacattattatttaaggatatgttactatcgtataatatgatatttgggataaattgtt |
264 |
Q |
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| T |
2009235 |
ctatttcttttgaaaaaacaaaaagcaacttgacaaataatgacattattatttaaggatatgttactatcatataatatgatatttgggataaattgtt |
2009136 |
T |
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| Q |
265 |
ac |
266 |
Q |
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| T |
2009135 |
ac |
2009134 |
T |
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