View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14042_high_29 (Length: 260)
Name: NF14042_high_29
Description: NF14042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14042_high_29 |
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Alignment Details
Target: chr5 (Bit Score: 121; Significance: 4e-62; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 12 - 136
Target Start/End: Complemental strand, 2623678 - 2623554
Alignment:
| Q |
12 |
atgaatccaaaatcttagttatcatgaataataggccaagtagtatttatgcaatgacaagtggcggcgtacgtgtgggtcctagttgccatgttttgta |
111 |
Q |
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| T |
2623678 |
atgaatccaaaatcttagttatcatgaatgataggccaagtagtatttatgcaatgacaagtggcggcgtacgtgtgggtcctagttgccatgttttgta |
2623579 |
T |
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| Q |
112 |
catttggagcctgaaaaacatgttg |
136 |
Q |
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| T |
2623578 |
catttggagcctgaaaaacatgttg |
2623554 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 159 - 244
Target Start/End: Complemental strand, 2623511 - 2623425
Alignment:
| Q |
159 |
tccatcaataaaaagatctaccgtgacccaaatttgctaaaagatccgcac-aagtgttggcttctctataaatatgagatacttgt |
244 |
Q |
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| T |
2623511 |
tccatcaataaaaagatctaccgtgacccaaatttgctaaaagatccgcacaaagtgttggcttctctataaatatgagatacttgt |
2623425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 164 - 243
Target Start/End: Original strand, 26603933 - 26604012
Alignment:
| Q |
164 |
caataaaaagatctaccgtgacccaaatttgctaaaagatccgcacaagtgttggcttctctataaatatgagatacttg |
243 |
Q |
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| T |
26603933 |
caatcaaaatatctatggtgacccaagtttcctaaaaaattcgtacaattgttggcttctctataaatttgagatacttg |
26604012 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 239
Target Start/End: Complemental strand, 36518909 - 36518861
Alignment:
| Q |
191 |
tttgctaaaagatccgcacaagtgttggcttctctataaatatgagata |
239 |
Q |
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| T |
36518909 |
tttgctagaagatccgcacaactattggctactctataaatataagata |
36518861 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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