View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14042_high_30 (Length: 256)
Name: NF14042_high_30
Description: NF14042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14042_high_30 |
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Alignment Details
Target: chr5 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 42018394 - 42018577
Alignment:
| Q |
1 |
tgttattattatttaggtcagtttgcttaagctttaacatatttacatttatatcagcttcatgtttttgatgcttctgctgttatttagatcaatcctt |
100 |
Q |
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| T |
42018394 |
tgttattattatttaggtcagtttgcttaagctttaacatatttacatttatatcagcttcatgtttttgatgcttctgctgttatttagatcaatcctt |
42018493 |
T |
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| Q |
101 |
attggacatgcagggaacgagtgggagctcaatcgttaatgtgaatttgtgtgctttactgattgtggaatattattggctgtg |
184 |
Q |
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| T |
42018494 |
attggacatgcagggaacgagtgggagctcaatcgttaatgtgaatttgtgtgctttactgattgtggaatattattggctgtg |
42018577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 184 - 241
Target Start/End: Original strand, 42018701 - 42018758
Alignment:
| Q |
184 |
gcttttgtgttcctcaaatttgctaattaatccaagatttgaggtgaacacaacatat |
241 |
Q |
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| T |
42018701 |
gcttttgtgttcctcaaacttgctaattaatccaagatttgaggtgcacacaacatat |
42018758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 1251614 - 1251797
Alignment:
| Q |
1 |
tgttattattatttaggtcagtttgcttaagctttaacatatttacatttatatcagcttcatgtttttgatgcttctgctgttatttagatcaatcctt |
100 |
Q |
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| T |
1251614 |
tgttattattatttaggtcagtttgcttaagctttaacatatttacatttatatcagcttcatgtttttgatgcttctgctgttatttagatcaatcctt |
1251713 |
T |
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| Q |
101 |
attggacatgcagggaacgagtgggagctcaatcgttaatgtgaatttgtgtgctttactgattgtggaatattattggctgtg |
184 |
Q |
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| T |
1251714 |
attggacatgcagggaacgagtgggagctcaatcgttaatgtgaatttgtgtgctttactgattgtggaatattattggctgtg |
1251797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 184 - 241
Target Start/End: Original strand, 1251924 - 1251981
Alignment:
| Q |
184 |
gcttttgtgttcctcaaatttgctaattaatccaagatttgaggtgaacacaacatat |
241 |
Q |
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| T |
1251924 |
gcttttgtgttcctcaaacttgctaattaatccaagatttgaggtgcacacaacatat |
1251981 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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