View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14042_high_33 (Length: 244)
Name: NF14042_high_33
Description: NF14042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14042_high_33 |
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Alignment Details
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 1615563 - 1615790
Alignment:
| Q |
1 |
tcccatcaaacagtacttgattttgatactctgcttcatgctatgttggtggtgttaaatttgtttaaaatagaaaactaaactgttagaagaaccaaaa |
100 |
Q |
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| T |
1615563 |
tcccatcaaacaatacttgattttgatactctgcttcatgctatgttggtggtgttaaatttgtttaaaatagaaaactaaactgttagaagaaccaaaa |
1615662 |
T |
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| Q |
101 |
agcaagataattcaatacaaacaaccaacataaatataatttaaaaataatttttctgaactatagaacttgcagaccagagcaattagtagaataaaag |
200 |
Q |
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| T |
1615663 |
agcaagataattcaatacaaacaaccaacataaatataatttaaaaataatttttctgaactatagaacttgcagaccagagcaaatagtagaataaaag |
1615762 |
T |
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| Q |
201 |
ccgctaagctgcaactggattaagtgga |
228 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
1615763 |
ccgctaagctgcaactggattaagtgga |
1615790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 24455132 - 24455046
Alignment:
| Q |
1 |
tcccatcaaacagtacttgattttgatactc-tgcttcatgctatgttggtggtgttaaatttgtttaaaatagaaaactaaactgt |
86 |
Q |
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|||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24455132 |
tcccatcaaacaaaacttgattttgatactcctgcttcatcctatgttggtggtgttaaatttgtttaaaatagaaaactaaactgt |
24455046 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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