View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14042_high_37 (Length: 218)
Name: NF14042_high_37
Description: NF14042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14042_high_37 |
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Alignment Details
Target: chr5 (Bit Score: 176; Significance: 5e-95; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 17 - 200
Target Start/End: Complemental strand, 12117144 - 12116961
Alignment:
| Q |
17 |
atactctataaaattaaattaatacattacgttgttgtcatatacatcaagtgtctttatttataaataggttagttgattggtatattccttattagat |
116 |
Q |
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| T |
12117144 |
atactctataaaattaaattaatacattacgttgttgtcatgcacatcaagtgtctttatttataaataggttagttgattggtatattccttattagat |
12117045 |
T |
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| Q |
117 |
tagatcccaagttcatatttatctagagtaacttcacatttgattaacgtaaaatgaaatccacgagtgttccctcctcggttg |
200 |
Q |
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| T |
12117044 |
tagatcccaagttcatatttatctagagtaacttcacatttgattaacgtaaaatgaaatccacgagtgttccctcctcggttg |
12116961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 159 - 200
Target Start/End: Complemental strand, 12097668 - 12097627
Alignment:
| Q |
159 |
attaacgtaaaatgaaatccacgagtgttccctcctcggttg |
200 |
Q |
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| T |
12097668 |
attaacataaaatgaaatccacgagtgttccctcctcggttg |
12097627 |
T |
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