View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14042_high_5 (Length: 533)

Name: NF14042_high_5
Description: NF14042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14042_high_5
NF14042_high_5
[»] chr5 (13 HSPs)
chr5 (1-359)||(7164464-7164841)
chr5 (361-518)||(7164949-7165106)
chr5 (235-346)||(17636343-17636454)
chr5 (235-320)||(11135766-11135851)
chr5 (272-327)||(6706040-6706095)
chr5 (268-346)||(6158944-6159021)
chr5 (272-345)||(34016002-34016075)
chr5 (163-209)||(7335621-7335667)
chr5 (236-320)||(3759553-3759637)
chr5 (268-327)||(17644601-17644660)
chr5 (272-345)||(759160-759233)
chr5 (268-309)||(6158131-6158172)
chr5 (232-317)||(23941350-23941435)
[»] chr4 (6 HSPs)
chr4 (272-346)||(55527918-55527992)
chr4 (268-333)||(27992127-27992192)
chr4 (272-327)||(12586803-12586857)
chr4 (272-327)||(24974151-24974206)
chr4 (268-327)||(27992305-27992364)
chr4 (272-347)||(45237409-45237484)
[»] chr7 (4 HSPs)
chr7 (272-327)||(38386192-38386247)
chr7 (272-327)||(5177-5232)
chr7 (272-345)||(19365400-19365473)
chr7 (272-348)||(5061733-5061809)
[»] chr3 (8 HSPs)
chr3 (272-327)||(15040699-15040754)
chr3 (268-346)||(54525801-54525879)
chr3 (268-347)||(3539666-3539745)
chr3 (272-327)||(7665751-7665806)
chr3 (268-345)||(26998288-26998365)
chr3 (290-347)||(35069469-35069526)
chr3 (272-328)||(19872146-19872202)
chr3 (273-317)||(53101163-53101207)
[»] chr1 (7 HSPs)
chr1 (272-327)||(28446535-28446590)
chr1 (272-327)||(28474810-28474865)
chr1 (272-329)||(35563376-35563433)
chr1 (233-337)||(37259319-37259423)
chr1 (290-345)||(48027119-48027174)
chr1 (272-327)||(33401426-33401481)
chr1 (272-318)||(35563532-35563578)
[»] chr8 (4 HSPs)
chr8 (268-337)||(33228884-33228953)
chr8 (272-327)||(5967242-5967297)
chr8 (272-346)||(31762240-31762314)
chr8 (272-346)||(34279566-34279640)
[»] chr2 (1 HSPs)
chr2 (272-327)||(8273263-8273318)
[»] chr6 (1 HSPs)
chr6 (272-327)||(32274202-32274257)
[»] scaffold0262 (1 HSPs)
scaffold0262 (268-317)||(8412-8461)


Alignment Details
Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 359
Target Start/End: Original strand, 7164464 - 7164841
Alignment:
Q  1 ccctcaatttagagactcctaggtctatacctgtaattatacaccagtgtgacattatgataaaacttagttttgaatttttgtttgattgttgccgaca 100  Q
    ||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||    
T  7164464 ccctcaatttatagactcctagttctatacctgtaattatacaccagtgtgacattttgataaaacttagttttgaatttttgtttgtttgttgccgaca 7164563  T
Q  101 tggaagaggaaggaaaaatgtttaacttatgataacatgcatagtgtgatagaacattgtttgatgaaacaaaacgagcgtgagttaactcatgc----- 195  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         
T  7164564 tggaagaggaaggaaaaatgtttaacttatgataacatgcatagtgtgatagaacattgtttgatgaaacaaaacgagcgtgagttaactcatgctgagt 7164663  T
Q  196 --------------tgagttttagtgtggnnnnnnnngcgtgtcttaacacagcgtgtgttaactcacgttgtcatttacaccgatgtgagttaacatgc 281  Q
                  |||||||||||||||        ||||||||||| ||||||||||||||||||||||  ||||||||||| |||||||||| ||||    
T  7164664 gaattaactcatgttgagttttagtgtggttttttttgcgtgtcttaatacagcgtgtgttaactcacgttaccatttacaccggtgtgagttaatatgc 7164763  T
Q  282 gtaagggtatttcagtcatttattttggaaatgagcgaatccatttaaataaagagtagaattcatagtccactatac 359  Q
    ||| || ||||| | ||||||||||||  ||||||||||||||||| | |||||||||||||||||||||||||||||    
T  7164764 gtagggatattttaatcatttattttgagaatgagcgaatccatttgagtaaagagtagaattcatagtccactatac 7164841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 361 - 518
Target Start/End: Original strand, 7164949 - 7165106
Alignment:
Q  361 caaatcaacgtagctaaaaatttccattcccaacgtttctccaaagatcgtgtattttcgcgcgcattcgaacacaccgatcaagtgtttgattatttgc 460  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | |||||||||||||||||||    
T  7164949 caaatcaacgtagctaaaaatttccattcccaacgtttctccaaatatcgtgtattttcgcgcgcattcgaacacacccaccaagtgtttgattatttgc 7165048  T
Q  461 ctcactcaacaaagaacaaaacacttcctcattcatgatcctttaccaccatcattct 518  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7165049 ctcactcaacaaagaacaaaacacttcctcattcatgatcctttaccaccatcattct 7165106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 235 - 346
Target Start/End: Complemental strand, 17636454 - 17636343
Alignment:
Q  235 cgtgtgttaactcacgttgtcatttacaccgatgtgagttaacatgcgtaagggtatttcagtcatttattttggaaatgagcgaatccatttaaataaa 334  Q
    |||| |||||||||||||  ||||||||     ||||||||||||| ||| |||||||||| ||||||||||||| ||||||||||||||||||  |||     
T  17636454 cgtgagttaactcacgtttccatttacattagcgtgagttaacatgtgtaggggtatttcaatcatttattttgggaatgagcgaatccatttaggtaat 17636355  T
Q  335 gagtagaattca 346  Q
    ||| ||||||||    
T  17636354 gagcagaattca 17636343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 235 - 320
Target Start/End: Complemental strand, 11135851 - 11135766
Alignment:
Q  235 cgtgtgttaactcacgttgtcatttacaccgatgtgagttaacatgcgtaagggtatttcagtcatttattttggaaatgagcgaa 320  Q
    |||||||||||| |||||||||||| |||    || |||||||||||||| ||||||||  |||||||||||||||||||||||||    
T  11135851 cgtgtgttaacttacgttgtcatttgcactagcgtaagttaacatgcgtaggggtattttggtcatttattttggaaatgagcgaa 11135766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 272 - 327
Target Start/End: Original strand, 6706040 - 6706095
Alignment:
Q  272 gttaacatgcgtaagggtatttcagtcatttattttggaaatgagcgaatccattt 327  Q
    ||||||||||||| ||| |||||||||||||| |||||||||||||||||||||||    
T  6706040 gttaacatgcgtaggggcatttcagtcatttactttggaaatgagcgaatccattt 6706095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 268 - 346
Target Start/End: Original strand, 6158944 - 6159021
Alignment:
Q  268 gtgagttaacatgcgtaagggtatttcagtcatttattttggaaatgagcgaatccatttaaataaagagtagaattca 346  Q
    |||||||||||| |||| |||||||| || |||||| ||||| ||||||||||||||||||| ||| ||| ||||||||    
T  6158944 gtgagttaacatacgta-gggtattttagacatttactttgggaatgagcgaatccatttaagtaatgagcagaattca 6159021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 272 - 345
Target Start/End: Complemental strand, 34016075 - 34016002
Alignment:
Q  272 gttaacatgcgtaagggtatttcagtcatttattttggaaatgagcgaatccatttaaataaagagtagaattc 345  Q
    ||||||||| ||| ||| |||||||||||||| ||||| ||||||||||||||||||  ||| ||| |||||||    
T  34016075 gttaacatgtgtaggggcatttcagtcatttactttgggaatgagcgaatccatttaggtaatgagcagaattc 34016002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 163 - 209
Target Start/End: Complemental strand, 7335667 - 7335621
Alignment:
Q  163 gatgaaacaaaacgagcgtgagttaactcatgctgagttttagtgtg 209  Q
    ||||||||||||| |||||||||||||||||| || |||||||||||    
T  7335667 gatgaaacaaaacaagcgtgagttaactcatgttgggttttagtgtg 7335621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 236 - 320
Target Start/End: Original strand, 3759553 - 3759637
Alignment:
Q  236 gtgtgttaactcacgttgtcatttacaccgatgtgagttaacatgcgtaagggtatttcagtcatttattttggaaatgagcgaa 320  Q
    |||||||||||||||||| |||||  ||    |||||||||||||  || || |||||  |||||||||||||||||||||||||    
T  3759553 gtgtgttaactcacgttggcatttgtactagcgtgagttaacatgaatagggttattttggtcatttattttggaaatgagcgaa 3759637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 268 - 327
Target Start/End: Original strand, 17644601 - 17644660
Alignment:
Q  268 gtgagttaacatgcgtaagggtatttcagtcatttattttggaaatgagcgaatccattt 327  Q
    |||| |||||||||||| ||||||||  | |||||| ||||| |||||||||||||||||    
T  17644601 gtgaattaacatgcgtaggggtattttggacatttactttgggaatgagcgaatccattt 17644660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 272 - 345
Target Start/End: Complemental strand, 759233 - 759160
Alignment:
Q  272 gttaacatgcgtaagggtatttcagtcatttattttggaaatgagcgaatccatttaaataaagagtagaattc 345  Q
    ||||||||||||| | | ||||| |||||||| ||||| ||||| ||||||||||||  ||| ||| |||||||    
T  759233 gttaacatgcgtatgagcatttcggtcatttactttgggaatgatcgaatccatttaggtaatgagcagaattc 759160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 309
Target Start/End: Complemental strand, 6158172 - 6158131
Alignment:
Q  268 gtgagttaacatgcgtaagggtatttcagtcatttattttgg 309  Q
    ||||||||||||||||| ||||||||| |||||||| |||||    
T  6158172 gtgagttaacatgcgtaggggtatttcggtcatttactttgg 6158131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 232 - 317
Target Start/End: Complemental strand, 23941435 - 23941350
Alignment:
Q  232 cagcgtgtgttaactcacgttgtcatttacaccgatgtgagttaacatgcgtaagggtatttcagtcatttattttggaaatgagc 317  Q
    ||||||| |||||||||||||| |||||||||    || |||||| ||||||| ||| ||||| | |||||| ||||||| |||||    
T  23941435 cagcgtgagttaactcacgttgccatttacactagcgtaagttaatatgcgtaggggcatttctgacatttactttggaattgagc 23941350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 272 - 346
Target Start/End: Original strand, 55527918 - 55527992
Alignment:
Q  272 gttaacatgcgtaagggtatttcagtcatttattttggaaatgagcgaatccatttaaataaagagtagaattca 346  Q
    ||||||||||||| ||| ||||| |||||||  ||||||||||||||||||||||||||||| ||| ||||||||    
T  55527918 gttaacatgcgtaggggcatttcggtcatttgctttggaaatgagcgaatccatttaaataatgagcagaattca 55527992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 268 - 333
Target Start/End: Complemental strand, 27992192 - 27992127
Alignment:
Q  268 gtgagttaacatgcgtaagggtatttcagtcatttattttggaaatgagcgaatccatttaaataa 333  Q
    |||||||||||||| || ||| ||||| |||||||| ||||| ||||||| ||||||||| |||||    
T  27992192 gtgagttaacatgcttaggggcatttcggtcatttactttgggaatgagcaaatccatttgaataa 27992127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 272 - 327
Target Start/End: Original strand, 12586803 - 12586857
Alignment:
Q  272 gttaacatgcgtaagggtatttcagtcatttattttggaaatgagcgaatccattt 327  Q
    ||||||||||||| ||  ||||| ||||||||||| ||||||||||||||||||||    
T  12586803 gttaacatgcgtagggacatttcggtcatttattt-ggaaatgagcgaatccattt 12586857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 272 - 327
Target Start/End: Original strand, 24974151 - 24974206
Alignment:
Q  272 gttaacatgcgtaagggtatttcagtcatttattttggaaatgagcgaatccattt 327  Q
    ||||||||||||| ||| ||||| |||||||| ||||| ||||||| |||||||||    
T  24974151 gttaacatgcgtaggggcatttcggtcatttactttgggaatgagcaaatccattt 24974206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 268 - 327
Target Start/End: Original strand, 27992305 - 27992364
Alignment:
Q  268 gtgagttaacatgcgtaagggtatttcagtcatttattttggaaatgagcgaatccattt 327  Q
    |||||||||||||| || ||||||||  | |||||||||| ||||||||| |||||||||    
T  27992305 gtgagttaacatgcataggggtattttggacatttattttagaaatgagcaaatccattt 27992364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 272 - 347
Target Start/End: Complemental strand, 45237484 - 45237409
Alignment:
Q  272 gttaacatgcgtaagggtatttcagtcatttattttggaaatgagcgaatccatttaaataaagagtagaattcat 347  Q
    |||||||||| || ||| |||||||| ||||| ||| ||||| ||||||||||||| | ||| ||| |||||||||    
T  45237484 gttaacatgcataggggcatttcagttatttactttagaaataagcgaatccatttgagtaatgagcagaattcat 45237409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 272 - 327
Target Start/End: Complemental strand, 38386247 - 38386192
Alignment:
Q  272 gttaacatgcgtaagggtatttcagtcatttattttggaaatgagcgaatccattt 327  Q
    ||||||||||||| ||| |||||| ||||||| |||||||||||||||||||||||    
T  38386247 gttaacatgcgtaggggcatttcaatcatttactttggaaatgagcgaatccattt 38386192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 272 - 327
Target Start/End: Original strand, 5177 - 5232
Alignment:
Q  272 gttaacatgcgtaagggtatttcagtcatttattttggaaatgagcgaatccattt 327  Q
    ||||||||||||| ||| ||||| |||||||| ||||| |||||||||||||||||    
T  5177 gttaacatgcgtaggggcatttcggtcatttactttgggaatgagcgaatccattt 5232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 272 - 345
Target Start/End: Original strand, 19365400 - 19365473
Alignment:
Q  272 gttaacatgcgtaagggtatttcagtcatttattttggaaatgagcgaatccatttaaataaagagtagaattc 345  Q
    ||||| ||||||| ||||||||| |||||||  ||||| ||||||||||||||||||  ||| ||| |||||||    
T  19365400 gttaaaatgcgtaggggtatttcggtcattttatttgggaatgagcgaatccatttaggtaatgagcagaattc 19365473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 272 - 348
Target Start/End: Original strand, 5061733 - 5061809
Alignment:
Q  272 gttaacatgcgtaagggtatttcagtcatttattttggaaatgagcgaatccatttaaataaagagtagaattcata 348  Q
    |||||||||||||| |  |||||  |||||||||||||||||||| ||||||||||   ||| ||| ||||||||||    
T  5061733 gttaacatgcgtaacgacatttcgttcatttattttggaaatgagtgaatccatttgggtaatgagcagaattcata 5061809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 272 - 327
Target Start/End: Complemental strand, 15040754 - 15040699
Alignment:
Q  272 gttaacatgcgtaagggtatttcagtcatttattttggaaatgagcgaatccattt 327  Q
    ||||||||||||| ||| |||||||||||||| ||||| |||||||||||||||||    
T  15040754 gttaacatgcgtaggggcatttcagtcatttactttgggaatgagcgaatccattt 15040699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 268 - 346
Target Start/End: Complemental strand, 54525879 - 54525801
Alignment:
Q  268 gtgagttaacatgcgtaagggtatttcagtcatttattttggaaatgagcgaatccatttaaataaagagtagaattca 346  Q
    ||||||||| || | || || ||||||||||||||| |||||||||||||||||| |||||  ||||||| | ||||||    
T  54525879 gtgagttaatatacatagggatatttcagtcatttactttggaaatgagcgaatcaatttaggtaaagagcataattca 54525801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 268 - 347
Target Start/End: Complemental strand, 3539745 - 3539666
Alignment:
Q  268 gtgagttaacatgcgtaagggtatttcagtcatttattttggaaatgagcgaatccatttaaataaagagtagaattcat 347  Q
    ||||||||||||| ||| || |||||   ||||||||||||||||||||| || ||||||  |||||||| | |||||||    
T  3539745 gtgagttaacatgtgtagggctattttgatcatttattttggaaatgagcaaaaccatttggataaagagcataattcat 3539666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 272 - 327
Target Start/End: Complemental strand, 7665806 - 7665751
Alignment:
Q  272 gttaacatgcgtaagggtatttcagtcatttattttggaaatgagcgaatccattt 327  Q
    |||||||||| |||||| ||||| |||||||| ||||  |||||||||||||||||    
T  7665806 gttaacatgcataagggcatttcggtcatttactttgcgaatgagcgaatccattt 7665751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 345
Target Start/End: Original strand, 26998288 - 26998365
Alignment:
Q  268 gtgagttaacatgcgtaagggtatttcagtcatttattttggaaatgagcgaatccatttaaataaagagtagaattc 345  Q
    ||||||||||||| ||| || |||||   ||||||||||| |||||||||||| ||||||  || ||||| |||||||    
T  26998288 gtgagttaacatgtgtagggatattttgatcatttattttagaaatgagcgaaaccatttggatgaagagcagaattc 26998365  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 347
Target Start/End: Original strand, 35069469 - 35069526
Alignment:
Q  290 atttcagtcatttattttggaaatgagcgaatccatttaaataaagagtagaattcat 347  Q
    ||||| |||||||| ||| ||||||| |||||||||||| |||| ||| |||||||||    
T  35069469 atttcggtcatttactttagaaatgaacgaatccatttagataatgagcagaattcat 35069526  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 272 - 328
Target Start/End: Original strand, 19872146 - 19872202
Alignment:
Q  272 gttaacatgcgtaagggtatttcagtcatttattttggaaatgagcgaatccattta 328  Q
    |||||||||||||  || |||| ||||||||||||| | ||||||||||| ||||||    
T  19872146 gttaacatgcgtagaggcattttagtcatttattttaggaatgagcgaattcattta 19872202  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 273 - 317
Target Start/End: Original strand, 53101163 - 53101207
Alignment:
Q  273 ttaacatgcgtaagggtatttcagtcatttattttggaaatgagc 317  Q
    |||||||||||||||||| ||  |||||||| |||||||||||||    
T  53101163 ttaacatgcgtaagggtaatttcgtcatttactttggaaatgagc 53101207  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 272 - 327
Target Start/End: Original strand, 28446535 - 28446590
Alignment:
Q  272 gttaacatgcgtaagggtatttcagtcatttattttggaaatgagcgaatccattt 327  Q
    ||||||||||||| ||| |||||||||||||| ||||| |||||||||||||||||    
T  28446535 gttaacatgcgtaggggcatttcagtcatttactttgggaatgagcgaatccattt 28446590  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 272 - 327
Target Start/End: Complemental strand, 28474865 - 28474810
Alignment:
Q  272 gttaacatgcgtaagggtatttcagtcatttattttggaaatgagcgaatccattt 327  Q
    ||||||||||||| ||| |||||||||||||||||||| |||||| ||||||||||    
T  28474865 gttaacatgcgtaggggcatttcagtcatttattttgggaatgagtgaatccattt 28474810  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 272 - 329
Target Start/End: Complemental strand, 35563433 - 35563376
Alignment:
Q  272 gttaacatgcgtaagggtatttcagtcatttattttggaaatgagcgaatccatttaa 329  Q
    ||||||||||| | ||| |||||||||||||| ||||| |||||||||||||||||||    
T  35563433 gttaacatgcgcaggggcatttcagtcatttactttgggaatgagcgaatccatttaa 35563376  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 233 - 337
Target Start/End: Complemental strand, 37259423 - 37259319
Alignment:
Q  233 agcgtgtgttaactcacgttgtcatttacaccgatgtgagttaacatgcgtaagggtatttcagtcatttattttggaaatgagcgaatccatttaaata 332  Q
    |||||| |||||||||||||| |||||||||    |||| ||||||| |||| | | ||||||| |||||| ||||||||||||| || || |||| |||    
T  37259423 agcgtgagttaactcacgttgccatttacactagcgtgaattaacatacgtaggagcatttcagacatttactttggaaatgagcaaaaccgtttagata 37259324  T
Q  333 aagag 337  Q
    |||||    
T  37259323 aagag 37259319  T

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Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 290 - 345
Target Start/End: Original strand, 48027119 - 48027174
Alignment:
Q  290 atttcagtcatttattttggaaatgagcgaatccatttaaataaagagtagaattc 345  Q
    ||||| |||||||||| | ||||||||||||||||||||| ||||||| |||||||    
T  48027119 atttcggtcatttattatagaaatgagcgaatccatttaactaaagagcagaattc 48027174  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 272 - 327
Target Start/End: Complemental strand, 33401481 - 33401426
Alignment:
Q  272 gttaacatgcgtaagggtatttcagtcatttattttggaaatgagcgaatccattt 327  Q
    |||||||||| |||||| ||||| |||||||| ||||  |||||||||||||||||    
T  33401481 gttaacatgcataagggcatttcggtcatttactttgagaatgagcgaatccattt 33401426  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 272 - 318
Target Start/End: Complemental strand, 35563578 - 35563532
Alignment:
Q  272 gttaacatgcgtaagggtatttcagtcatttattttggaaatgagcg 318  Q
    ||||||||||||| ||| |||||||||||||| ||||| ||||||||    
T  35563578 gttaacatgcgtaggggcatttcagtcatttactttgggaatgagcg 35563532  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 268 - 337
Target Start/End: Original strand, 33228884 - 33228953
Alignment:
Q  268 gtgagttaacatgcgtaagggtatttcagtcatttattttggaaatgagcgaatccatttaaataaagag 337  Q
    ||||||||||||| ||| |||||| || |||||||| ||||||||||||| ||||||||| | |||||||    
T  33228884 gtgagttaacatgtgtaggggtatatccgtcatttactttggaaatgagcaaatccatttgagtaaagag 33228953  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 272 - 327
Target Start/End: Original strand, 5967242 - 5967297
Alignment:
Q  272 gttaacatgcgtaagggtatttcagtcatttattttggaaatgagcgaatccattt 327  Q
    ||||||||||||| ||| |||||  ||||||| ||||| |||||||||||||||||    
T  5967242 gttaacatgcgtaggggcatttcgatcatttactttgggaatgagcgaatccattt 5967297  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 272 - 346
Target Start/End: Complemental strand, 31762314 - 31762240
Alignment:
Q  272 gttaacatgcgtaagggtatttcagtcatttattttggaaatgagcgaatccatttaaataaagagtagaattca 346  Q
    |||||||||| || || ||||||  | ||||| ||||| ||||||||||||||||| ||||| ||| ||||||||    
T  31762314 gttaacatgcatagggatatttcgtttatttactttgggaatgagcgaatccatttgaataatgagcagaattca 31762240  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 272 - 346
Target Start/End: Original strand, 34279566 - 34279640
Alignment:
Q  272 gttaacatgcgtaagggtatttcagtcatttattttggaaatgagcgaatccatttaaataaagagtagaattca 346  Q
    ||||||||| ||| ||| |||||  ||||||| ||| | ||||||||||||||||||| ||| ||| ||||||||    
T  34279566 gttaacatgtgtaggggcatttcgatcatttactttaggaatgagcgaatccatttaagtaatgagcagaattca 34279640  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 272 - 327
Target Start/End: Complemental strand, 8273318 - 8273263
Alignment:
Q  272 gttaacatgcgtaagggtatttcagtcatttattttggaaatgagcgaatccattt 327  Q
    ||||||||||||| ||| ||||| |||||||| ||||| |||||||||||||||||    
T  8273318 gttaacatgcgtaggggcatttcggtcatttactttgggaatgagcgaatccattt 8273263  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 272 - 327
Target Start/End: Complemental strand, 32274257 - 32274202
Alignment:
Q  272 gttaacatgcgtaagggtatttcagtcatttattttggaaatgagcgaatccattt 327  Q
    ||||||||||||| ||| |||||  ||||||| ||||| |||||||||||||||||    
T  32274257 gttaacatgcgtaggggcatttcgatcatttactttgggaatgagcgaatccattt 32274202  T

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Target: scaffold0262 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 317
Target Start/End: Complemental strand, 8461 - 8412
Alignment:
Q  268 gtgagttaacatgcgtaagggtatttcagtcatttattttggaaatgagc 317  Q
    |||||||||||||||||||||||||| |  |||||| ||| |||||||||    
T  8461 gtgagttaacatgcgtaagggtattttacacatttactttagaaatgagc 8412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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