View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14042_high_8 (Length: 456)
Name: NF14042_high_8
Description: NF14042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14042_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 9 - 440
Target Start/End: Original strand, 19351470 - 19351899
Alignment:
| Q |
9 |
agcagagaggaagaagacggaggagatcgttttgctcgaactttgataaacaaacggcgcagtcgccggagacgacggtggaggaacggcgtttgatgga |
108 |
Q |
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| T |
19351470 |
agcagagaggaagaagacggaggagatcgttttgctcgaactttgataagcaaacggcacagtcgccggagacaacggtggaggaacggcgtttgatgga |
19351569 |
T |
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| Q |
109 |
tgagaaggtgaaaatcgggagagaatcaacgacagaagttgtagtggacgaagtagtggtgaccggagaaactctaacagtggaggaggatgacggagag |
208 |
Q |
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| T |
19351570 |
tgagaaggtgaaaatcgggagagaatcaacgacggaagatgaagtggacgaagtcgtggtgaccggagaaactctaaaaatggaggaggatgacggagag |
19351669 |
T |
|
| Q |
209 |
aaacggcgacgacggaggatgaagtagagaatgaagaaaacagtgacggtaacggcgaaaacggttacggttatgaaaaggttgtgtgaggaatttgtgt |
308 |
Q |
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| T |
19351670 |
aaacggcgacgacggaggatgaagtagagaatgaagaaaacggtgacggtaacggcgaaaacggttacggttatgaaaaggttgtgtgaggaatttgtgt |
19351769 |
T |
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| Q |
309 |
ttcccattttcacgtnnnnnnnnnnnnnnnnnnntacagtgaaactaattatgaatgaaataaatgatgacgtggcatgtaatgaa--agagagagaggt |
406 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
19351770 |
ttcccattttcacgt----tgtgtgtgttgttgttacagtgaaactaattatgaatgaaataaatgatgacgtggcatgtaatgaaagagagagagaggt |
19351865 |
T |
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| Q |
407 |
gttgaggtttggttgttattgttattgttatggt |
440 |
Q |
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| T |
19351866 |
gttgaggtttggttgttattgttattgttatggt |
19351899 |
T |
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