View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14042_high_9 (Length: 448)
Name: NF14042_high_9
Description: NF14042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14042_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 413; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 1 - 433
Target Start/End: Original strand, 50444373 - 50444804
Alignment:
| Q |
1 |
tcatcaacgacccgacaatgttatgtgactataaacctatgactgttcctcatattttgcattcacatatgaattatccagatccatattttaaaattcc |
100 |
Q |
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| T |
50444373 |
tcattaacgacccgacaatgttatgtgactataaacctatgactgttcctcatattttgccttcacatatgaattatccagatccatattttaaaattcc |
50444472 |
T |
|
| Q |
101 |
tttccaagcactaattaaatcaaaatattgttttcacgagttgtcaattcagaaatgcattaagaacatggagaaaacatcaatatattgagtaacaaga |
200 |
Q |
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| T |
50444473 |
tttccaagcactaattaaatcaaaatattgttttcacgagttgtcaattcagaaatgcattaagaacaaggagaaaacatcaatatattgagtaacaaga |
50444572 |
T |
|
| Q |
201 |
atatatatgatcgtcaaatcaaaagtaatacataagagtcatagttaactacttctaatctcaacaaaagagaaattagttattcatactcaatactcat |
300 |
Q |
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| T |
50444573 |
atatatatgatcgtcaaatcaaaagtaatacataagagtcatagttaactacttctaatctcaacaaaagagaaattagttattcatactcaatactcat |
50444672 |
T |
|
| Q |
301 |
ggagtgttggtagctttacacaaagagaagaaatcatgaagatgaaataaacatccaagacgattcatcactcttgaataaacgtctcctccaccttgct |
400 |
Q |
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| T |
50444673 |
ggagtgttggtagctttacacaaagagaagaaatcatgaagatgaaataaacatccaagacgattcatcactcttgaat-aacgtctcctccaccttgct |
50444771 |
T |
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| Q |
401 |
agcttcattttagtcttgtctctctgtatttct |
433 |
Q |
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| T |
50444772 |
agcttcattttagtcttgtctctctgtatttct |
50444804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 200 - 273
Target Start/End: Original strand, 41310335 - 41310408
Alignment:
| Q |
200 |
aatatatatgatcgtcaaatcaaaagtaatacataagagtcatagttaactacttctaatctcaacaaaagaga |
273 |
Q |
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| T |
41310335 |
aatatatataatcaccatatcaaaagtaatacgtaagagttatagttaattacatataatcctaacaaaagaga |
41310408 |
T |
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