View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14042_low_11 (Length: 430)
Name: NF14042_low_11
Description: NF14042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14042_low_11 |
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| [»] scaffold0019 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 12 - 414
Target Start/End: Original strand, 3565751 - 3566153
Alignment:
| Q |
12 |
aagaacctccgttgttttaaattccagaagaaggggatgatagtggtcagaggtgagccttattaaagttgaacgagatgttgtgctacatgcatctaac |
111 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3565751 |
aagaatctccgttgttttaaattccagaagaaggggatgatagtgctcagaggtgagccttattaaagttgaacgagatgttgtgctacatgcatctaac |
3565850 |
T |
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| Q |
112 |
caatcttgattgcaaatagacctgtccagtctcctttgagtgaatcttcgtccctctcttccatttttccatgtaaaaagcgcgccctttgttggtaaat |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3565851 |
caatcttgattgcaaatagacctgtccagtctcctttgagtgaatcttcatccctatcttccatttttccatgtaaaaagcgcgccctttgttggtaaat |
3565950 |
T |
|
| Q |
212 |
gtaataaatcataagtatctgtccatgcttgaaaatcttgcatgggagttctagaaggagagcagttgccctgatgttcataagctcccaatattgtgtt |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
3565951 |
gtaataaatcataagtatctgtccatgcttgaaaatcttgcatgggagttctagaaggagagcagtttccctgatgttcataagctcccaatattgtgtt |
3566050 |
T |
|
| Q |
312 |
aaaatcaccagtaaagttccaagggaggctgaactgacttaacaaatcaccaagagtattccacaatttccttatcttcaagtaacaagttgatgcatat |
411 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
3566051 |
aaaatcaccagtaaagttccaagggaggctgaactgacttaacaaatcaccaagagtattccacaatttccttctcttcaagtaacaagttgatgcatat |
3566150 |
T |
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| Q |
412 |
att |
414 |
Q |
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| T |
3566151 |
att |
3566153 |
T |
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Target: scaffold0019 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 7 - 414
Target Start/End: Original strand, 139827 - 140231
Alignment:
| Q |
7 |
gtgagaagaacctccgttgttttaaattccagaagaaggggatgatagtggtcagaggtgagccttattaaagttgaacgagatgttgtgctacatgcat |
106 |
Q |
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|||| ||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
139827 |
gtgaaaagaacctctgttgttttaaattccagaagaaggggat---agtggtcagaggtgagccttattaaagttgaacaagatgttgtgctacatgcat |
139923 |
T |
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| Q |
107 |
ctaaccaatcttgattgcaaatagacctgtccagtctcctttgagtgaatcttcgtccctctcttccatttttccatgtaaaaagcgcgccctttgttgg |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
139924 |
ctaaccaatcttgattgcaaatagacctgtccagtctcctttgagtgaatcttcttccctttcttccatttttccatgtaaaaagcgcgccctttgttgg |
140023 |
T |
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| Q |
207 |
taaatgtaataaatcataagtatctgtccatgcttgaaaatcttgcatgggagttctagaaggagagcagttgccctgatgttcataagctcccaatatt |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
140024 |
taaatgtaataaatcataagtatctgtccatgcttgaaaatcttgcatgggagttctagaaggagagcagtttccctgatgttcataagctcccaatatt |
140123 |
T |
|
| Q |
307 |
gtgttaaaatcaccagtaaagttccaagggaggctgaactgacttaacaaatcaccaagagtattccacaatttccttatcttcaagtaacaagttgatg |
406 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
140124 |
gtgttaaaatcaccaataaagttccaagggaggctgaactgacttaacaaattaccaagagtattccacaatttccttctcttcaagtaacaagttgatg |
140223 |
T |
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| Q |
407 |
catatatt |
414 |
Q |
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|||||||| |
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| T |
140224 |
catatatt |
140231 |
T |
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