View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14042_low_12 (Length: 378)
Name: NF14042_low_12
Description: NF14042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14042_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 50968787 - 50968532
Alignment:
| Q |
1 |
aatcaacaactcatgactcaaagggcagtgggcatgtcaatttcattgtaagtatataggtttctctgttgctttggatatttatatttttggacaagct |
100 |
Q |
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| T |
50968787 |
aatcaacaactcatgactcaaagggcagtgggcatgtcaatttcattgtacgtatataggtttctctattgctttggatatttatatttttggacaagct |
50968688 |
T |
|
| Q |
101 |
ttgttaattcaactatatacaagcgatccaattgtagagcagggtgtgattgatgttttaattttgggatgaagggacatgttagacaaccagggtgtaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
50968687 |
ttgttaattcaactatatacaagcgatccaattgtagagcagggtgtgattgatgttttaattttgggatgaagggacatgttagacgaccagggtgtaa |
50968588 |
T |
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| Q |
201 |
gttgtaacaattcagtttgctttagttgtttgttttaaaatacaattgtctcacaa |
256 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50968587 |
gttgtaacaattcagtttgctttagttgtttgttttaaaatacaattgtctcacaa |
50968532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 325 - 363
Target Start/End: Complemental strand, 50968463 - 50968425
Alignment:
| Q |
325 |
gtatagctaactgtactcaaatatttcatacatccatgt |
363 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
50968463 |
gtatagctaactgtactcaaatatttcatacatccatgt |
50968425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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