View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14042_low_15 (Length: 358)
Name: NF14042_low_15
Description: NF14042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14042_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 137; Significance: 2e-71; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 25 - 194
Target Start/End: Original strand, 13647500 - 13647668
Alignment:
| Q |
25 |
tctctaccaactgagctaaaaattagataatatatgtaattagataatatcacaaaaacaaaaagttcannnnnnnngtttgaatgaagtttatagtgaa |
124 |
Q |
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| T |
13647500 |
tctctaccaactgagctaaaaattagataatatatgtaattagataatttcacaaaaacaaaaagttcattttttt-gtttgaatgaagtttatagtgaa |
13647598 |
T |
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| Q |
125 |
agtattttgctattttaataacttatgtaaattattttgttctcgacaaggacgactatatttggaaatt |
194 |
Q |
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| T |
13647599 |
agtattttgctattttaataacttatgtaaattattttgttctcgacaaggacgactatatttggaaatt |
13647668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 25 - 194
Target Start/End: Original strand, 13747925 - 13748093
Alignment:
| Q |
25 |
tctctaccaactgagctaaaaattagataatatatgtaattagataatatcacaaaaacaaaaagttcannnnnnnngtttgaatgaagtttatagtgaa |
124 |
Q |
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| T |
13747925 |
tctctaccaactgagctaaaaattagataatatatgtaattagataatttcacaaaaacaaaaagttcattttttt-gtttgaatgaagtttatagtgaa |
13748023 |
T |
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| Q |
125 |
agtattttgctattttaataacttatgtaaattattttgttctcgacaaggacgactatatttggaaatt |
194 |
Q |
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| T |
13748024 |
agtattttgctattttaataacttatgtaaattattttgttctcgacaaggacgactatatttggaaatt |
13748093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 275 - 315
Target Start/End: Original strand, 13647748 - 13647788
Alignment:
| Q |
275 |
tttatcgctgagtattttagatgtcaattttgacgactaaa |
315 |
Q |
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| T |
13647748 |
tttatcgctgagtattttagatgtcaattttgacgactaaa |
13647788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 275 - 315
Target Start/End: Original strand, 13748173 - 13748213
Alignment:
| Q |
275 |
tttatcgctgagtattttagatgtcaattttgacgactaaa |
315 |
Q |
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| T |
13748173 |
tttatcgctgagtattttagatgtcaattttgacgactaaa |
13748213 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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