View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14042_low_17 (Length: 344)
Name: NF14042_low_17
Description: NF14042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14042_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 318; Significance: 1e-179; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 14 - 335
Target Start/End: Original strand, 36442904 - 36443225
Alignment:
| Q |
14 |
catatatgtttggttccaaaaccctggtctcttaaaatttcttctgcaataacatgttgaggcaagaggttgtagcatgcatatgtcgctgaaacctata |
113 |
Q |
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| T |
36442904 |
catatatgtttggttccaaaaccctggtctcttaaaatttcttctgcaataacatgttgaggcaagaggttgtagcatgcatatgtcgctgaaacctaca |
36443003 |
T |
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| Q |
114 |
gttatttagaataacacataaccataaaatgacaaaattttaaacttaaattgttgaggtttagaaaaaagcaccctcataggtcgacttaatccactca |
213 |
Q |
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| T |
36443004 |
gttatttagaataacacataaccataaaatgacaaaattttaaacttaaattgttgaggtttagaaaaaagcaccctcataggtcgacttaatccactca |
36443103 |
T |
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| Q |
214 |
gattcgacaacatttttgcagtcccatgtgaattagtataaatgaggtagaagacattgaagaatgaaagtctgaaaagaattcttacgcacataaccag |
313 |
Q |
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| T |
36443104 |
gattcgacaacatttttgcagtcccatgtgaattagtataaatgaggtagaagacattgaagaatgaaagtctgaaaagaattcttacgcacataaccag |
36443203 |
T |
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| Q |
314 |
cataggaattcatgtcttcttc |
335 |
Q |
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| T |
36443204 |
cataggaattcatgtcttcttc |
36443225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 221 - 317
Target Start/End: Complemental strand, 39160703 - 39160607
Alignment:
| Q |
221 |
caacatttttgcagtcccatgtgaattagtataaatgaggtagaagacattgaagaatgaaagtctgaaaagaattcttacgcacataaccagcata |
317 |
Q |
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| T |
39160703 |
caacatttttacaaccctatttgaattagtataaatgaagtagaagacatcaaagaattgaagtctgaaaagaaatcttacctacataaccagcata |
39160607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 119 - 163
Target Start/End: Complemental strand, 32898836 - 32898792
Alignment:
| Q |
119 |
ttagaataacacataaccataaaatgacaaaattttaaacttaaa |
163 |
Q |
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| T |
32898836 |
ttagaataacatataaccataaaatgatacaaatttaaacttaaa |
32898792 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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