View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14042_low_2 (Length: 680)
Name: NF14042_low_2
Description: NF14042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14042_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 309; Significance: 1e-174; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 470
Target Start/End: Complemental strand, 34331611 - 34331146
Alignment:
| Q |
1 |
aacaaaatgaacctcgtgcctatgtagcttcttcgtaatttttacttgttttagttttctgtttgatgaaatagacaattccttttcaaaaagcacgtcc |
100 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34331611 |
aacaaaatgaacctcgtgcctatgtagcttctttgtaatttttacttgttttagttttctgtttgatgaaatagacaattccttttcaaaaagcacgtcc |
34331512 |
T |
|
| Q |
101 |
ttccaattgtaactatcatcac----ataagagaagcttttgtttgaattattatttttgtagagaattcatatatgtacacaattgtagcgactaataa |
196 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||||||||||||| |
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|
| T |
34331511 |
ttccaattgtaactatcatcacatatataagagaagcttttgtttgaattattatttttgcagagaattcatatctgtacacaactgtagcgactaataa |
34331412 |
T |
|
| Q |
197 |
cgcaaattagatgagataaatcaatgggnnnnnnnnttatccctcaagaattttattgctcttagattccttcaannnnnnnnnnnnnnnnattgctctt |
296 |
Q |
| |
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|||||| ||||| |||||||||| ||| |||||||||||||||||| |||||||||||||||||||| ||||||||| |
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| T |
34331411 |
cgcaaactagataagataaatcagtgg--aaaaaaattatccctcaagaatttttttgctcttagattccttcaa-------tttttttttattgctctt |
34331321 |
T |
|
| Q |
297 |
agattttaagaagcaaaa-tttaatttattacgttcttatttctctgaaagattgtatcatatcattcaaatgaagaatgctcgagagatcattcatatt |
395 |
Q |
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|
|||||||||| ||||||| ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
34331320 |
agattttaaggagcaaaattttaatttattacgttcttatttctatgaaagatcgtatcatatcattcaaatgaagaatgcttgagagatcattcatatt |
34331221 |
T |
|
| Q |
396 |
gggcaaagagtaatcacgcaatatagtcgatcactttagtaaacatcgattatggtagcattaccggattatgag |
470 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| |
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| T |
34331220 |
gggcaaagagtaatcacgcaatatagtcgatcactttagtaaccatcgactatggtagcattaccggattatgag |
34331146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 466 - 676
Target Start/End: Complemental strand, 34331100 - 34330890
Alignment:
| Q |
466 |
atgagttgaacatcacatcttaactcaaatgtgagacttttatctcacccttcctacacaacaatatcaagacttacaacacaaggagtattttacttta |
565 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
34331100 |
atgagttgaacatcacatcttaactcaaatgtgagacttttatctcacacttcctacacaacaatatcaagacttgcaacacaaggagtattttacttta |
34331001 |
T |
|
| Q |
566 |
ttaaccaacaactctggtagcagtgttgggtcatgaggagagtctaaatgatcatctacattgaatcaagaacaatcatacaaatgaattagacaccaca |
665 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34331000 |
ttaactaacaactctggtagcagtgttgggtcatgaggagagtctaaatgatcatctacattgaatcaagaacaatcatacaaatgaattagacaccaca |
34330901 |
T |
|
| Q |
666 |
tcttaactcaa |
676 |
Q |
| |
|
||||||||||| |
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|
| T |
34330900 |
tcttaactcaa |
34330890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 615 - 672
Target Start/End: Original strand, 8240366 - 8240423
Alignment:
| Q |
615 |
gatcatctacattgaatcaagaacaatcatacaaatgaattagacaccacatcttaac |
672 |
Q |
| |
|
|||||| |||||||| |||||||||||||||||| ||| || |||||||||||||||| |
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|
| T |
8240366 |
gatcatttacattgagtcaagaacaatcatacaagtgagttggacaccacatcttaac |
8240423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 589 - 676
Target Start/End: Complemental strand, 3717312 - 3717225
Alignment:
| Q |
589 |
tgttgggtcatgaggagagtctaaatgatcatctacattgaatcaagaacaatcatacaaatgaattagacaccacatcttaactcaa |
676 |
Q |
| |
|
||||||||||| | || |||| ||||||||||| ||||| |||||||||| | |||||||| ||||||| |||||||||| |||| |
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| T |
3717312 |
tgttgggtcataaagaaagtccggatgatcatctatattgagtcaagaacaaccgtacaaatgggttagacaacacatcttaattcaa |
3717225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 590 - 643
Target Start/End: Complemental strand, 33810949 - 33810896
Alignment:
| Q |
590 |
gttgggtcatgaggagagtctaaatgatcatctacattgaatcaagaacaatca |
643 |
Q |
| |
|
||||||||||||||| ||||| ||||||| ||| ||||| ||||||||||||| |
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|
| T |
33810949 |
gttgggtcatgaggatagtctggatgatcacctatattgagtcaagaacaatca |
33810896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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