View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14042_low_25 (Length: 274)
Name: NF14042_low_25
Description: NF14042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14042_low_25 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 108 - 274
Target Start/End: Original strand, 27326732 - 27326898
Alignment:
| Q |
108 |
tgtttgccaaaacgagagtttcatgctgtcattcttaaaaattcatcgttactccaatgatctaccatagacggttactatcaagtctctgaatgtgtag |
207 |
Q |
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| T |
27326732 |
tgtttgccaaaacgagagtttcacgttgttattcttaaaatttcatcgtcaatccaatgatctaccatagacggttactatcaagtctccgaatgtgtag |
27326831 |
T |
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| Q |
208 |
tctagtcgtgtgagttgatatgtttaacgagtattaagaaggaggttcatagttcaatccttgttat |
274 |
Q |
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| T |
27326832 |
tctagtcgtgtgagttgatatgtttaactagtattaagaaggaggttcatagttcaatccttgttat |
27326898 |
T |
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Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 27326573 - 27326640
Alignment:
| Q |
18 |
ctttatggtacaaatatttaaactcaaataatgtatacttttacatttattttggacagtatatatttt |
86 |
Q |
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| T |
27326573 |
ctttatggtacaaatatttaaactaaaatagtatatacttttacattt-ttttggaccgtatatatttt |
27326640 |
T |
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