View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14042_low_27 (Length: 270)

Name: NF14042_low_27
Description: NF14042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14042_low_27
NF14042_low_27
[»] chr7 (26 HSPs)
chr7 (6-129)||(8610644-8610767)
chr7 (8-149)||(8602694-8602835)
chr7 (7-149)||(8591358-8591500)
chr7 (23-149)||(7876850-7876976)
chr7 (23-141)||(8647669-8647787)
chr7 (23-143)||(8582629-8582749)
chr7 (23-109)||(3148371-3148457)
chr7 (11-99)||(8660254-8660342)
chr7 (23-99)||(6790420-6790496)
chr7 (23-147)||(8635515-8635639)
chr7 (10-99)||(1302321-1302410)
chr7 (23-112)||(8577286-8577375)
chr7 (23-120)||(27829361-27829458)
chr7 (23-143)||(8572556-8572676)
chr7 (23-99)||(10493017-10493093)
chr7 (6-134)||(29576988-29577116)
chr7 (23-141)||(8668433-8668551)
chr7 (23-96)||(13332166-13332239)
chr7 (47-143)||(8568804-8568900)
chr7 (23-111)||(17261390-17261478)
chr7 (22-99)||(8104075-8104152)
chr7 (23-87)||(8655371-8655435)
chr7 (23-121)||(8546663-8546761)
chr7 (77-143)||(29581235-29581301)
chr7 (22-99)||(8016308-8016385)
chr7 (47-99)||(8584576-8584628)
[»] chr1 (3 HSPs)
chr1 (11-99)||(4677544-4677632)
chr1 (11-99)||(15596069-15596157)
chr1 (10-121)||(34465251-34465362)
[»] chr2 (9 HSPs)
chr2 (35-112)||(12244431-12244508)
chr2 (6-99)||(16656599-16656692)
chr2 (10-99)||(43626330-43626419)
chr2 (29-112)||(12257936-12258019)
chr2 (29-120)||(12235787-12235878)
chr2 (29-112)||(14705460-14705543)
chr2 (47-108)||(12000334-12000395)
chr2 (29-120)||(7543266-7543357)
chr2 (47-112)||(16661106-16661171)
[»] chr5 (2 HSPs)
chr5 (23-102)||(28220954-28221033)
chr5 (23-99)||(42554203-42554279)
[»] chr4 (5 HSPs)
chr4 (23-141)||(9323080-9323198)
chr4 (23-141)||(9377559-9377677)
chr4 (23-141)||(9335052-9335169)
chr4 (47-112)||(30776114-30776179)
chr4 (47-112)||(35133451-35133516)
[»] chr6 (1 HSPs)
chr6 (68-99)||(28911324-28911355)


Alignment Details
Target: chr7 (Bit Score: 96; Significance: 4e-47; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 6 - 129
Target Start/End: Complemental strand, 8610767 - 8610644
Alignment:
Q  6 gagcagagattatctataatgaacaaggaaacagaaccactccttcttttgttgctttctctgatgatcaaaggttgattggtgatgctgctaaaaacca 105  Q
    |||| ||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| ||    
T  8610767 gagctgagataatccataatgagcaaggaaacagaaccactccttcttttgttgctttctctggtgatcaaaggttgataggtgatgctgctaaaaatca 8610668  T
Q  106 agctgcttcaaacccagctaacac 129  Q
    ||||||||||||||||||||||||    
T  8610667 agctgcttcaaacccagctaacac 8610644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 8 - 149
Target Start/End: Complemental strand, 8602835 - 8602694
Alignment:
Q  8 gcagagattatctataatgaacaaggaaacagaaccactccttcttttgttgctttctctgatgatcaaaggttgattggtgatgctgctaaaaaccaag 107  Q
    |||||||||||  | ||||| |||||||||||||| ||||||||||||||||||||  |||||||| |||||||||| ||||||||||| ||||| || |    
T  8602835 gcagagattattcacaatgatcaaggaaacagaactactccttcttttgttgcttttactgatgataaaaggttgatcggtgatgctgccaaaaatcagg 8602736  T
Q  108 ctgcttcaaacccagctaacactatctatggtaatttatctt 149  Q
    ||||||| |||||||  |||||||||| ||||||||||||||    
T  8602735 ctgcttctaacccagtcaacactatctttggtaatttatctt 8602694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 7 - 149
Target Start/End: Complemental strand, 8591500 - 8591358
Alignment:
Q  7 agcagagattatctataatgaacaaggaaacagaaccactccttcttttgttgctttctctgatgatcaaaggttgattggtgatgctgctaaaaaccaa 106  Q
    ||||||||||||  | ||||| |||||||| ||||  || |||||||||||||||||  || |||||||||||||||||||||||||||| ||||||||     
T  8591500 agcagagattattcacaatgatcaaggaaatagaattacaccttcttttgttgcttttactaatgatcaaaggttgattggtgatgctgcaaaaaaccag 8591401  T
Q  107 gctgcttcaaacccagctaacactatctatggtaatttatctt 149  Q
    |||||||| |||||||| |||||| |||  |||||||||||||    
T  8591400 gctgcttctaacccagcaaacactgtcttcggtaatttatctt 8591358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 23 - 149
Target Start/End: Original strand, 7876850 - 7876976
Alignment:
Q  23 aatgaacaaggaaacagaaccactccttcttttgttgctttctctgatgatcaaaggttgattggtgatgctgctaaaaaccaagctgcttcaaacccag 122  Q
    ||||||||||| |||||||| || |||||||||||||||||| |  |||||||||||||||||||||||||||| ||||| || ||||| || ||||||     
T  7876850 aatgaacaaggcaacagaacaacaccttcttttgttgctttcacgaatgatcaaaggttgattggtgatgctgccaaaaatcaggctgcctctaacccat 7876949  T
Q  123 ctaacactatctatggtaatttatctt 149  Q
    | |||||| ||| |||||| |||||||    
T  7876950 ccaacactgtctttggtaacttatctt 7876976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 23 - 141
Target Start/End: Complemental strand, 8647787 - 8647669
Alignment:
Q  23 aatgaacaaggaaacagaaccactccttcttttgttgctttctctgatgatcaaaggttgattggtgatgctgctaaaaaccaagctgcttcaaacccag 122  Q
    ||||| |||||||||||||| || |||||||||||||||||| | |||||||||||||||||||||||||| |||||||| || |||||||| |||||      
T  8647787 aatgatcaaggaaacagaactacaccttcttttgttgctttcaccgatgatcaaaggttgattggtgatgccgctaaaaatcaggctgcttctaacccta 8647688  T
Q  123 ctaacactatctatggtaa 141  Q
    | |||||| ||| ||||||    
T  8647687 ccaacactgtctttggtaa 8647669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 23 - 143
Target Start/End: Complemental strand, 8582749 - 8582629
Alignment:
Q  23 aatgaacaaggaaacagaaccactccttcttttgttgctttctctgatgatcaaaggttgattggtgatgctgctaaaaaccaagctgcttcaaacccag 122  Q
    ||||| |||||||||| ||| || ||||||| |||||||||  || ||  |||||| ||||||||||||||||| ||||| ||||||||||| ||||||     
T  8582749 aatgatcaaggaaacaaaacaacaccttcttgtgttgcttttactaattctcaaagattgattggtgatgctgccaaaaatcaagctgcttctaacccaa 8582650  T
Q  123 ctaacactatctatggtaatt 143  Q
    | |||||||||||||||||||    
T  8582649 ccaacactatctatggtaatt 8582629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 23 - 109
Target Start/End: Complemental strand, 3148457 - 3148371
Alignment:
Q  23 aatgaacaaggaaacagaaccactccttcttttgttgctttctctgatgatcaaaggttgattggtgatgctgctaaaaaccaagct 109  Q
    ||||| ||||| |||| |||||| |||||||||||||||||| ||||||||||||||||| |||||||||||||||| || ||||||    
T  3148457 aatgaccaaggcaacaaaaccacaccttcttttgttgctttcactgatgatcaaaggttggttggtgatgctgctaagaatcaagct 3148371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 11 - 99
Target Start/End: Complemental strand, 8660342 - 8660254
Alignment:
Q  11 gagattatctataatgaacaaggaaacagaaccactccttcttttgttgctttctctgatgatcaaaggttgattggtgatgctgctaa 99  Q
    ||||| ||||| || || |||||||||| ||| || ||||| |||||||||||| |||| |||||||||||||||||||||||||||||    
T  8660342 gagatcatctacaacgaccaaggaaacaaaacaacaccttcatttgttgctttcactgacgatcaaaggttgattggtgatgctgctaa 8660254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 23 - 99
Target Start/End: Complemental strand, 6790496 - 6790420
Alignment:
Q  23 aatgaacaaggaaacagaaccactccttcttttgttgctttctctgatgatcaaaggttgattggtgatgctgctaa 99  Q
    ||||| ||||| |||| |||||| |||||||||||||||||| | ||||| ||||||||||| ||||||||||||||    
T  6790496 aatgaccaaggtaacaaaaccacaccttcttttgttgctttcaccgatgaccaaaggttgatcggtgatgctgctaa 6790420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 23 - 147
Target Start/End: Original strand, 8635515 - 8635639
Alignment:
Q  23 aatgaacaaggaaacagaaccactccttcttttgttgctttctctgatgatcaaaggttgattggtgatgctgctaaaaaccaagctgcttcaaacccag 122  Q
    ||||| ||||| ||||||| ||| ||||||| |||||||||| |||| |  ||||||||||||||||||||||| |||||||| ||| | || ||||||     
T  8635515 aatgagcaagggaacagaatcacaccttcttgtgttgctttcactgacgcacaaaggttgattggtgatgctgccaaaaaccaggcttcctctaacccat 8635614  T
Q  123 ctaacactatctatggtaatttatc 147  Q
    | || ||| ||| |||||| |||||    
T  8635615 ccaatactgtctttggtaacttatc 8635639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 10 - 99
Target Start/End: Complemental strand, 1302410 - 1302321
Alignment:
Q  10 agagattatctataatgaacaaggaaacagaaccactccttcttttgttgctttctctgatgatcaaaggttgattggtgatgctgctaa 99  Q
    |||||| ||||| || || ||||| |||| ||| || || ||||||||||||||| | ||||||||||||||||| ||||||||||||||    
T  1302410 agagatcatctacaacgaccaaggcaacaaaacaacaccgtcttttgttgctttcaccgatgatcaaaggttgatcggtgatgctgctaa 1302321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 23 - 112
Target Start/End: Complemental strand, 8577375 - 8577286
Alignment:
Q  23 aatgaacaaggaaacagaaccactccttcttttgttgctttctctgatgatcaaaggttgattggtgatgctgctaaaaaccaagctgct 112  Q
    ||||| ||||||||||||||||||||||||| |||||||||  |  ||  |||||| |||||||| |||||||| ||||| |||||||||    
T  8577375 aatgatcaaggaaacagaaccactccttcttgtgttgcttttaccaattctcaaagattgattggcgatgctgccaaaaatcaagctgct 8577286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 23 - 120
Target Start/End: Original strand, 27829361 - 27829458
Alignment:
Q  23 aatgaacaaggaaacagaaccactccttcttttgttgctttctctgatgatcaaaggttgattggtgatgctgctaaaaaccaagctgcttcaaaccc 120  Q
    ||||||||||| ||||  || || ||||||| |||||||||| | ||  | || ||||||||||||||||||||||| |||||||||||||| |||||    
T  27829361 aatgaacaaggcaacaagacaacaccttcttgtgttgctttcacggacaaacagaggttgattggtgatgctgctaagaaccaagctgcttccaaccc 27829458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 23 - 143
Target Start/End: Complemental strand, 8572676 - 8572556
Alignment:
Q  23 aatgaacaaggaaacagaaccactccttcttttgttgctttctctgatgatcaaaggttgattggtgatgctgctaaaaaccaagctgcttcaaacccag 122  Q
    ||||| |||||||||||||| ||||| |||| |||||||||  || ||  |||||| ||||| ||||||||||| ||||| ||||||||| | || |||     
T  8572676 aatgaccaaggaaacagaacaactccctcttgtgttgcttttactaattctcaaagattgatcggtgatgctgccaaaaatcaagctgctactaatccat 8572577  T
Q  123 ctaacactatctatggtaatt 143  Q
    | || ||||||| ||||||||    
T  8572576 ccaatactatctttggtaatt 8572556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 23 - 99
Target Start/End: Original strand, 10493017 - 10493093
Alignment:
Q  23 aatgaacaaggaaacagaaccactccttcttttgttgctttctctgatgatcaaaggttgattggtgatgctgctaa 99  Q
    ||||| |||||||| ||||| || ||||||||||||||||||    |||||||||||||||| ||||||||||||||    
T  10493017 aatgatcaaggaaatagaactacaccttcttttgttgctttcaacaatgatcaaaggttgatcggtgatgctgctaa 10493093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 6 - 134
Target Start/End: Original strand, 29576988 - 29577116
Alignment:
Q  6 gagcagagattatctataatgaacaaggaaacagaaccactccttcttttgttgctttctctgatgatcaaaggttgattggtgatgctgctaaaaacca 105  Q
    |||| ||||| ||| | ||||| ||||| || |||||||| |||||| |||| |||||| |||||   | |||||| |||||| ||||||||||||| ||    
T  29576988 gagctgagatcatccacaatgatcaaggcaatagaaccacaccttctgttgtagctttcactgattcactaaggttaattggtaatgctgctaaaaatca 29577087  T
Q  106 agctgcttcaaacccagctaacactatct 134  Q
     ||||| ||||||||| | ||||||||||    
T  29577088 ggctgcctcaaacccaaccaacactatct 29577116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 23 - 141
Target Start/End: Complemental strand, 8668551 - 8668433
Alignment:
Q  23 aatgaacaaggaaacagaaccactccttcttttgttgctttctctgatgatcaaaggttgattggtgatgctgctaaaaaccaagctgcttcaaacccag 122  Q
    ||||| ||||||||| |||  || ||||||||||||||||||    |||| |||||||||||||| ||||||||||| || ||| ||||| | ||||| |    
T  8668551 aatgatcaaggaaaccgaataacaccttcttttgttgctttcaacaatgaacaaaggttgattggcgatgctgctaagaatcaatctgctactaaccctg 8668452  T
Q  123 ctaacactatctatggtaa 141  Q
      |||||||||| ||||||    
T  8668451 aaaacactatctttggtaa 8668433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 96
Target Start/End: Original strand, 13332166 - 13332239
Alignment:
Q  23 aatgaacaaggaaacagaaccactccttcttttgttgctttctctgatgatcaaaggttgattggtgatgctgc 96  Q
    ||||| |||||||| ||||| || ||||||||||||||||||    |||||||||| |||||||||||||||||    
T  13332166 aatgatcaaggaaatagaactacaccttcttttgttgctttcaacaatgatcaaagattgattggtgatgctgc 13332239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 47 - 143
Target Start/End: Complemental strand, 8568900 - 8568804
Alignment:
Q  47 ccttcttttgttgctttctctgatgatcaaaggttgattggtgatgctgctaaaaaccaagctgcttcaaacccagctaacactatctatggtaatt 143  Q
    ||||||| |||||||||| || |   |||||| ||||||||||||||||| ||||| ||||||||||| || ||| | ||||||| || ||||||||    
T  8568900 ccttcttgtgttgctttcactaaatctcaaagattgattggtgatgctgccaaaaatcaagctgcttctaatccaaccaacactacctttggtaatt 8568804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 23 - 111
Target Start/End: Complemental strand, 17261478 - 17261390
Alignment:
Q  23 aatgaacaaggaaacagaaccactccttcttttgttgctttctctgatgatcaaaggttgattggtgatgctgctaaaaaccaagctgc 111  Q
    ||||| |||||||||| ||  ||||||||||||||||||||  || | ||| |||||||||| |||||||| ||||| || ||||||||    
T  17261478 aatgatcaaggaaacaaaattactccttcttttgttgcttttgctaaagatgaaaggttgatcggtgatgccgctaagaatcaagctgc 17261390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 22 - 99
Target Start/End: Complemental strand, 8104152 - 8104075
Alignment:
Q  22 taatgaacaaggaaacagaaccactccttcttttgttgctttctctgatgatcaaaggttgattggtgatgctgctaa 99  Q
    |||||| ||||| |||||||| || || |||| |||||||||| |||||  | |||||||||| ||||||||||||||    
T  8104152 taatgatcaagggaacagaacgacaccgtcttatgttgctttcactgatagtgaaaggttgatcggtgatgctgctaa 8104075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 87
Target Start/End: Complemental strand, 8655435 - 8655371
Alignment:
Q  23 aatgaacaaggaaacagaaccactccttcttttgttgctttctctgatgatcaaaggttgattgg 87  Q
    ||||| ||||| || ||||| || |||||| ||||||||||| ||||| ||||||||||||||||    
T  8655435 aatgatcaaggcaatagaactacaccttctgttgttgctttcactgattatcaaaggttgattgg 8655371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 121
Target Start/End: Complemental strand, 8546761 - 8546663
Alignment:
Q  23 aatgaacaaggaaacagaaccactccttcttttgttgctttctctgatgatcaaaggttgattggtgatgctgctaaaaaccaagctgcttcaaaccca 121  Q
    ||||| |||||||||| ||| || ||||||| |||||||||| |  ||   |||||| |||||||||||||||| ||||| || ||| |||| ||||||    
T  8546761 aatgatcaaggaaacaaaacaacaccttcttgtgttgctttcacaaattcccaaaggctgattggtgatgctgccaaaaatcaggcttcttctaaccca 8546663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 143
Target Start/End: Original strand, 29581235 - 29581301
Alignment:
Q  77 aggttgattggtgatgctgctaaaaaccaagctgcttcaaacccagctaacactatctatggtaatt 143  Q
    ||||||||| || ||||||||||||| || |||||  |||||||| | |||||||||| ||||||||    
T  29581235 aggttgattagtaatgctgctaaaaatcaggctgccgcaaacccaacaaacactatctttggtaatt 29581301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 22 - 99
Target Start/End: Original strand, 8016308 - 8016385
Alignment:
Q  22 taatgaacaaggaaacagaaccactccttcttttgttgctttctctgatgatcaaaggttgattggtgatgctgctaa 99  Q
    |||||| ||||| ||| |||| || || |||| |||||||||| |||||  | |||||||||| ||||||||||||||    
T  8016308 taatgatcaagggaaccgaacgacgccgtcttatgttgctttcactgatagtgaaaggttgatcggtgatgctgctaa 8016385  T

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Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 99
Target Start/End: Original strand, 8584576 - 8584628
Alignment:
Q  47 ccttcttttgttgctttctctgatgatcaaaggttgattggtgatgctgctaa 99  Q
    ||||| |||||||||||  | ||||||||||||||| |||||| |||||||||    
T  8584576 ccttcctttgttgcttttaccgatgatcaaaggttggttggtggtgctgctaa 8584628  T

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Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 11 - 99
Target Start/End: Original strand, 4677544 - 4677632
Alignment:
Q  11 gagattatctataatgaacaaggaaacagaaccactccttcttttgttgctttctctgatgatcaaaggttgattggtgatgctgctaa 99  Q
    |||||||| || ||||||||||| |||| ||| || |||||||||||||||||  ||||||||||||||||||||||| ||||||||||    
T  4677544 gagattatttacaatgaacaaggcaacaaaacaacaccttcttttgttgcttttactgatgatcaaaggttgattggtaatgctgctaa 4677632  T

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Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 11 - 99
Target Start/End: Complemental strand, 15596157 - 15596069
Alignment:
Q  11 gagattatctataatgaacaaggaaacagaaccactccttcttttgttgctttctctgatgatcaaaggttgattggtgatgctgctaa 99  Q
    ||||||||| | ||||| |||||||||||||  || |||||||||||| ||||| || |||||||||||||||||||||||||||||||    
T  15596157 gagattatccacaatgaccaaggaaacagaattacaccttcttttgtttctttcactaatgatcaaaggttgattggtgatgctgctaa 15596069  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 10 - 121
Target Start/End: Original strand, 34465251 - 34465362
Alignment:
Q  10 agagattatctataatgaacaaggaaacagaaccactccttcttttgttgctttctctgatgatcaaaggttgattggtgatgctgctaaaaaccaagct 109  Q
    |||||||||  | ||||| ||||| |||| |||||| |||||||||||||||||  || |||||||||| ||||| ||| |||||||||| || ||| ||    
T  34465251 agagattattgacaatgaccaaggtaacacaaccacaccttcttttgttgcttttactcatgatcaaagattgatcggtaatgctgctaagaatcaaact 34465350  T
Q  110 gcttcaaaccca 121  Q
    ||| | ||||||    
T  34465351 gctaccaaccca 34465362  T

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Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 35 - 112
Target Start/End: Original strand, 12244431 - 12244508
Alignment:
Q  35 aacagaaccactccttcttttgttgctttctctgatgatcaaaggttgattggtgatgctgctaaaaaccaagctgct 112  Q
    |||||||| || ||||||| |||||||||| |||| ||||||||||| |||||||||||||||||||| |||||||||    
T  12244431 aacagaacaacaccttcttgtgttgctttcactgaagatcaaaggtttattggtgatgctgctaaaaatcaagctgct 12244508  T

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Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 6 - 99
Target Start/End: Original strand, 16656599 - 16656692
Alignment:
Q  6 gagcagagattatctataatgaacaaggaaacagaaccactccttcttttgttgctttctctgatgatcaaaggttgattggtgatgctgctaa 99  Q
    |||||||||| ||  | ||||| || ||||||||||| || |||||||||||||||||| || |||||||||||||||| ||||||||||||||    
T  16656599 gagcagagatcatacacaatgaccagggaaacagaacaacaccttcttttgttgctttcactcatgatcaaaggttgatcggtgatgctgctaa 16656692  T

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Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 10 - 99
Target Start/End: Complemental strand, 43626419 - 43626330
Alignment:
Q  10 agagattatctataatgaacaaggaaacagaaccactccttcttttgttgctttctctgatgatcaaaggttgattggtgatgctgctaa 99  Q
    |||||||||| | ||||| |||||||||||||| || |||||||||||| ||||| || | || ||||||||||||||||||||||||||    
T  43626419 agagattatccacaatgaccaaggaaacagaactacaccttcttttgtttctttcactaaggaccaaaggttgattggtgatgctgctaa 43626330  T

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Target: chr2; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 29 - 112
Target Start/End: Original strand, 12257936 - 12258019
Alignment:
Q  29 caaggaaacagaaccactccttcttttgttgctttctctgatgatcaaaggttgattggtgatgctgctaaaaaccaagctgct 112  Q
    |||||||||||||| || ||||||| |||||||||  || | ||||||||||||||||||||||||||||| || |||||||||    
T  12257936 caaggaaacagaacaacgccttcttgtgttgcttttactaaagatcaaaggttgattggtgatgctgctaagaatcaagctgct 12258019  T

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Target: chr2; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 29 - 120
Target Start/End: Complemental strand, 12235878 - 12235787
Alignment:
Q  29 caaggaaacagaaccactccttcttttgttgctttctctgatgatcaaaggttgattggtgatgctgctaaaaaccaagctgcttcaaaccc 120  Q
    ||||| || ||||| || |||||||||||||||||| | ||  |||| ||||||||||||||||||||||| || ||||||||||| |||||    
T  12235878 caaggcaatagaacaaccccttcttttgttgctttcaccgaaaatcagaggttgattggtgatgctgctaagaatcaagctgcttccaaccc 12235787  T

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Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 29 - 112
Target Start/End: Complemental strand, 14705543 - 14705460
Alignment:
Q  29 caaggaaacagaaccactccttcttttgttgctttctctgatgatcaaaggttgattggtgatgctgctaaaaaccaagctgct 112  Q
    ||||| || ||||| ||||||||||||||||||||| | ||  ||||  |||||||||||||||||||||| || |||||||||    
T  14705543 caaggcaatagaacaactccttcttttgttgctttcaccgaaaatcagcggttgattggtgatgctgctaagaatcaagctgct 14705460  T

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Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 47 - 108
Target Start/End: Complemental strand, 12000395 - 12000334
Alignment:
Q  47 ccttcttttgttgctttctctgatgatcaaaggttgattggtgatgctgctaaaaaccaagc 108  Q
    ||||||| |||||||||| ||||  ||||||||||  |||||||||||||||||||||||||    
T  12000395 ccttcttgtgttgctttcactgaaaatcaaaggtttgttggtgatgctgctaaaaaccaagc 12000334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 120
Target Start/End: Complemental strand, 7543357 - 7543266
Alignment:
Q  29 caaggaaacagaaccactccttcttttgttgctttctctgatgatcaaaggttgattggtgatgctgctaaaaaccaagctgcttcaaaccc 120  Q
    ||||| |||||||| || |||||||||||||||||| | ||  |||| |||||||| ||||||  |||||| || ||||||||||| |||||    
T  7543357 caaggcaacagaacaacaccttcttttgttgctttcaccgaaaatcagaggttgatcggtgataatgctaagaatcaagctgcttccaaccc 7543266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 47 - 112
Target Start/End: Original strand, 16661106 - 16661171
Alignment:
Q  47 ccttcttttgttgctttctctgatgatcaaaggttgattggtgatgctgctaaaaaccaagctgct 112  Q
    |||||||||||||||||  |||||| |||||||||| | |||| |||||||||  | |||||||||    
T  16661106 ccttcttttgttgcttttactgatgctcaaaggttggtcggtggtgctgctaaggatcaagctgct 16661171  T

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Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 23 - 102
Target Start/End: Complemental strand, 28221033 - 28220954
Alignment:
Q  23 aatgaacaaggaaacagaaccactccttcttttgttgctttctctgatgatcaaaggttgattggtgatgctgctaaaaa 102  Q
    ||||| ||||| |||| ||| ||||||||||||||||||||| | |||||| ||||||||||||| ||||||||||||||    
T  28221033 aatgatcaaggcaacaaaacaactccttcttttgttgctttcaccgatgatgaaaggttgattggcgatgctgctaaaaa 28220954  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 23 - 99
Target Start/End: Original strand, 42554203 - 42554279
Alignment:
Q  23 aatgaacaaggaaacagaaccactccttcttttgttgctttctctgatgatcaaaggttgattggtgatgctgctaa 99  Q
    ||||| ||||| |||| ||| || |||||||||||||||||  || || || |||||||||||||||||||||||||    
T  42554203 aatgatcaaggcaacaaaacaacaccttcttttgttgcttttactcatcatgaaaggttgattggtgatgctgctaa 42554279  T

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Target: chr4 (Bit Score: 47; Significance: 7e-18; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 23 - 141
Target Start/End: Original strand, 9323080 - 9323198
Alignment:
Q  23 aatgaacaaggaaacagaaccactccttcttttgttgctttctctgatgatcaaaggttgattggtgatgctgctaaaaaccaagctgcttcaaacccag 122  Q
    ||||| ||||||||| |||| || ||||||||||||||||||    |||| |||||||||||||||||||||||||| || ||| ||||| | ||||| |    
T  9323080 aatgatcaaggaaaccgaacaacaccttcttttgttgctttcaacaatgagcaaaggttgattggtgatgctgctaagaatcaatctgctactaaccctg 9323179  T
Q  123 ctaacactatctatggtaa 141  Q
      |||||||||| ||||||    
T  9323180 aaaacactatctttggtaa 9323198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 23 - 141
Target Start/End: Original strand, 9377559 - 9377677
Alignment:
Q  23 aatgaacaaggaaacagaaccactccttcttttgttgctttctctgatgatcaaaggttgattggtgatgctgctaaaaaccaagctgcttcaaacccag 122  Q
    ||||| ||||||||| |||| || ||||||||||||||||||    |||| |||||||||||||||||||||||||| || ||| ||||| | ||||| |    
T  9377559 aatgatcaaggaaaccgaacaacaccttcttttgttgctttcaacaatgagcaaaggttgattggtgatgctgctaagaatcaatctgctactaaccctg 9377658  T
Q  123 ctaacactatctatggtaa 141  Q
      |||||||||| ||||||    
T  9377659 aaaacactatctttggtaa 9377677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 23 - 141
Target Start/End: Original strand, 9335052 - 9335169
Alignment:
Q  23 aatgaacaaggaaacagaaccactccttcttttgttgctttctctgatgatcaaaggttgattggtgatgctgctaaaaaccaagctgcttcaaacccag 122  Q
    ||||| ||||||||| |||| || ||||||||||||||||||    |||| |||||||||| ||||||||||||||| || ||| ||||| | ||||| |    
T  9335052 aatgatcaaggaaaccgaacaacaccttcttttgttgctttcaacaatgagcaaaggttga-tggtgatgctgctaagaatcaatctgctactaaccctg 9335150  T
Q  123 ctaacactatctatggtaa 141  Q
      |||||||||| ||||||    
T  9335151 aaaacactatctttggtaa 9335169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 47 - 112
Target Start/End: Complemental strand, 30776179 - 30776114
Alignment:
Q  47 ccttcttttgttgctttctctgatgatcaaaggttgattggtgatgctgctaaaaaccaagctgct 112  Q
    |||||||||||||||||| |||||| |||||||||| | |||| |||||||||  |||| ||||||    
T  30776179 ccttcttttgttgctttcactgatggtcaaaggttggtcggtgctgctgctaaggaccaggctgct 30776114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 47 - 112
Target Start/End: Complemental strand, 35133516 - 35133451
Alignment:
Q  47 ccttcttttgttgctttctctgatgatcaaaggttgattggtgatgctgctaaaaaccaagctgct 112  Q
    ||||||| | |||||||| || | |||||||||||||| |||||||||||||| || |||||||||    
T  35133516 ccttcttgtattgctttcactaaggatcaaaggttgatcggtgatgctgctaagaatcaagctgct 35133451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 68 - 99
Target Start/End: Complemental strand, 28911355 - 28911324
Alignment:
Q  68 gatgatcaaaggttgattggtgatgctgctaa 99  Q
    ||||||||||||||||||||||||||||||||    
T  28911355 gatgatcaaaggttgattggtgatgctgctaa 28911324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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