View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14042_low_3 (Length: 639)
Name: NF14042_low_3
Description: NF14042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14042_low_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 570; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 570; E-Value: 0
Query Start/End: Original strand, 8 - 621
Target Start/End: Complemental strand, 42551428 - 42550810
Alignment:
| Q |
8 |
tccaagaatatataaatgttgcttatatctaaacttctgcaccatacaa-cttttctccatagttcatcaattttcttatgagtgtattctcttgaaata |
106 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42551428 |
tccaacaatatataaatgttgcttatatctaaacttctgcaccatacactcttttctccatagttcatcaattttcttatgagtgtattctcttgaaata |
42551329 |
T |
|
| Q |
107 |
ttcatatagcaaagctacttt----gttctatacatggcttcaaatatttgcaaaccttcacgtcgtgataattctctaataataaaaccaaccaaatat |
202 |
Q |
| |
|
||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42551328 |
ttcatatagcaaatctactttaattgttctatacatggcttcaaatatttgcaaaccttcacgtcgtgataattctctaataataaaaccaaccaaatat |
42551229 |
T |
|
| Q |
203 |
acctcaaagcctacccttttgctcaaagactacctccgagatgacctaagctcatgttcatcaagcgggttcaaatcattcccacgaagacaatgctgca |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42551228 |
acctcaaagcctacccttttgctcaaagactacctccgagatgacctaagctcatgttcatcaagcgggttcaaatcattcccacgaagacaatgctgca |
42551129 |
T |
|
| Q |
303 |
ccaccgttggattccaacacaagaagagcaacggtacttcactccctcgacgacgcgtaagggctctccagagagcttctgaagcagtaataactgccat |
402 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42551128 |
ccaccgttggattccaacacaagaagaacaacggtacttcactccctcgtcgacgcgtaagggctctccagagagcttctgaagcagtaataactgccat |
42551029 |
T |
|
| Q |
403 |
aaagtcattgtcctcacaaaagagtgctaaaacaaagaaagcttccactggtgttctttctaggagcttctcaaggaagctgttaagtcggagattctgg |
502 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42551028 |
aaagtcattgtcctcacaaaagagtgctaaaacaaagaaaacttccactggtgttctttctaggagcttctcaaggaagctgttaagtcggagattctgg |
42550929 |
T |
|
| Q |
503 |
agaaaagcagtgaaggaagagggaagtgaaggtgtattgaggtgtaagagatctttccgggaactacttatgcaggaacgagattataaaccaacgtcgt |
602 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42550928 |
agaaaagcagtgaaggaagagggaagtgaaggtgtattgaggtgtaagagatctttccgggaactacttatgcaggaacgagattataaaccaacgtcgt |
42550829 |
T |
|
| Q |
603 |
ttagcgaagatgccatatt |
621 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
42550828 |
ttagcgaagatgccatatt |
42550810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University