View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14042_low_4 (Length: 582)

Name: NF14042_low_4
Description: NF14042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14042_low_4
NF14042_low_4
[»] chr3 (29 HSPs)
chr3 (17-415)||(11493574-11493959)
chr3 (410-529)||(11493384-11493503)
chr3 (472-529)||(8383236-8383293)
chr3 (464-529)||(29112303-29112368)
chr3 (472-526)||(2620079-2620133)
chr3 (475-529)||(12703989-12704043)
chr3 (473-527)||(24633747-24633800)
chr3 (184-222)||(28697007-28697045)
chr3 (472-529)||(3164048-3164105)
chr3 (464-529)||(23870582-23870647)
chr3 (473-529)||(10954932-10954988)
chr3 (464-527)||(18426920-18426983)
chr3 (464-529)||(8412968-8413034)
chr3 (472-526)||(25064888-25064942)
chr3 (472-526)||(32804566-32804620)
chr3 (472-526)||(55401054-55401108)
chr3 (472-525)||(12674528-12674581)
chr3 (472-529)||(14216871-14216928)
chr3 (472-529)||(14223000-14223057)
chr3 (464-529)||(25948910-25948975)
chr3 (485-526)||(46191371-46191412)
chr3 (472-527)||(750643-750699)
chr3 (472-528)||(5441055-5441111)
chr3 (493-529)||(10690285-10690321)
chr3 (479-527)||(15544679-15544727)
chr3 (479-523)||(26290357-26290401)
chr3 (28-128)||(28696907-28697006)
chr3 (473-529)||(29508424-29508480)
chr3 (485-529)||(34910309-34910353)
[»] scaffold0085 (1 HSPs)
scaffold0085 (473-528)||(26373-26428)
[»] chr7 (21 HSPs)
chr7 (472-529)||(26733283-26733340)
chr7 (472-529)||(27945020-27945077)
chr7 (474-529)||(22868023-22868078)
chr7 (474-529)||(29787392-29787447)
chr7 (184-226)||(3367167-3367209)
chr7 (472-530)||(11722120-11722178)
chr7 (28-128)||(3367210-3367309)
chr7 (479-526)||(5307246-5307293)
chr7 (478-529)||(32308105-32308156)
chr7 (472-522)||(1433433-1433483)
chr7 (472-529)||(21141005-21141062)
chr7 (472-529)||(24339621-24339678)
chr7 (472-528)||(19206029-19206085)
chr7 (472-528)||(36297369-36297424)
chr7 (490-529)||(32287486-32287525)
chr7 (472-526)||(2034420-2034474)
chr7 (479-529)||(6630935-6630985)
chr7 (472-526)||(10042916-10042970)
chr7 (476-529)||(23191879-23191932)
chr7 (469-529)||(23930195-23930255)
chr7 (486-522)||(28401136-28401172)
[»] chr1 (25 HSPs)
chr1 (472-529)||(20157373-20157430)
chr1 (474-529)||(2896144-2896199)
chr1 (479-541)||(10474989-10475050)
chr1 (472-529)||(398788-398845)
chr1 (472-529)||(34298415-34298472)
chr1 (484-527)||(10572614-10572657)
chr1 (479-529)||(36878447-36878497)
chr1 (475-528)||(6427332-6427385)
chr1 (472-529)||(7918234-7918291)
chr1 (484-528)||(609482-609526)
chr1 (485-529)||(9828036-9828080)
chr1 (473-529)||(16812523-16812579)
chr1 (475-529)||(9033030-9033085)
chr1 (472-527)||(9709799-9709854)
chr1 (473-528)||(38078685-38078740)
chr1 (479-529)||(17831554-17831604)
chr1 (472-529)||(5376523-5376580)
chr1 (472-529)||(23636072-23636129)
chr1 (492-529)||(25361885-25361922)
chr1 (472-528)||(1262863-1262919)
chr1 (473-529)||(5898289-5898345)
chr1 (473-525)||(6415028-6415080)
chr1 (485-529)||(12443483-12443527)
chr1 (494-526)||(14332668-14332700)
chr1 (476-524)||(28268192-28268240)
[»] scaffold0306 (1 HSPs)
scaffold0306 (473-529)||(13380-13436)
[»] scaffold0152 (1 HSPs)
scaffold0152 (473-529)||(21891-21947)
[»] chr6 (23 HSPs)
chr6 (473-524)||(20371138-20371189)
chr6 (472-529)||(9658858-9658915)
chr6 (472-529)||(13851715-13851772)
chr6 (472-529)||(34595113-34595170)
chr6 (472-528)||(9629362-9629418)
chr6 (485-529)||(13360395-13360439)
chr6 (472-527)||(9027157-9027212)
chr6 (184-222)||(16720148-16720186)
chr6 (472-529)||(8776996-8777053)
chr6 (484-529)||(19040343-19040388)
chr6 (472-529)||(19044443-19044500)
chr6 (473-529)||(5000649-5000705)
chr6 (477-529)||(7265616-7265668)
chr6 (28-128)||(16720048-16720147)
chr6 (485-525)||(25096415-25096455)
chr6 (472-527)||(8365544-8365599)
chr6 (473-528)||(15443675-15443730)
chr6 (472-529)||(10770697-10770754)
chr6 (472-529)||(12696303-12696360)
chr6 (472-529)||(16766676-16766733)
chr6 (472-529)||(16833287-16833344)
chr6 (472-529)||(17341687-17341744)
chr6 (473-526)||(17841615-17841668)
[»] chr5 (20 HSPs)
chr5 (470-528)||(9449446-9449504)
chr5 (473-526)||(7175045-7175098)
chr5 (480-529)||(28588697-28588746)
chr5 (472-529)||(6326320-6326377)
chr5 (472-529)||(13287422-13287479)
chr5 (473-526)||(14674249-14674302)
chr5 (472-529)||(21191079-21191136)
chr5 (473-526)||(27144443-27144496)
chr5 (464-528)||(30098296-30098361)
chr5 (485-526)||(35017029-35017070)
chr5 (464-529)||(39698512-39698577)
chr5 (472-529)||(40000558-40000615)
chr5 (473-529)||(6770523-6770579)
chr5 (474-526)||(19579682-19579734)
chr5 (472-528)||(22423836-22423892)
chr5 (479-527)||(26716130-26716178)
chr5 (479-527)||(26985870-26985918)
chr5 (472-528)||(41558707-41558763)
chr5 (472-528)||(41995450-41995506)
chr5 (473-529)||(43001780-43001836)
[»] chr4 (20 HSPs)
chr4 (184-226)||(54188079-54188121)
chr4 (472-529)||(36635303-36635360)
chr4 (28-128)||(54188122-54188221)
chr4 (485-528)||(24613725-24613768)
chr4 (184-222)||(8571047-8571085)
chr4 (464-529)||(4383339-4383403)
chr4 (472-529)||(23293009-23293066)
chr4 (472-525)||(40742570-40742623)
chr4 (473-529)||(40179659-40179715)
chr4 (492-529)||(8423741-8423778)
chr4 (476-529)||(11651157-11651210)
chr4 (472-529)||(22440623-22440680)
chr4 (484-529)||(40613441-40613486)
chr4 (493-525)||(1074798-1074830)
chr4 (473-529)||(7012046-7012102)
chr4 (494-526)||(7214548-7214580)
chr4 (28-128)||(8570947-8571046)
chr4 (472-528)||(20521873-20521929)
chr4 (494-526)||(21658840-21658872)
chr4 (477-529)||(38148748-38148800)
[»] scaffold0004 (1 HSPs)
scaffold0004 (464-529)||(92778-92843)
[»] chr8 (18 HSPs)
chr8 (472-529)||(29776015-29776072)
chr8 (476-529)||(34897068-34897121)
chr8 (485-528)||(29447134-29447177)
chr8 (485-529)||(14134691-14134735)
chr8 (472-528)||(22651955-22652011)
chr8 (478-526)||(27101500-27101548)
chr8 (472-528)||(36934649-36934705)
chr8 (474-529)||(7658444-7658499)
chr8 (479-529)||(4786361-4786411)
chr8 (476-526)||(15816155-15816205)
chr8 (479-529)||(20679418-20679468)
chr8 (472-529)||(24362225-24362282)
chr8 (472-529)||(29510327-29510384)
chr8 (485-526)||(39954305-39954346)
chr8 (476-529)||(41838146-41838199)
chr8 (493-529)||(18067957-18067993)
chr8 (473-529)||(31109541-31109597)
chr8 (473-529)||(37283833-37283889)
[»] chr2 (14 HSPs)
chr2 (472-529)||(2331773-2331830)
chr2 (472-529)||(21616741-21616798)
chr2 (472-529)||(12940958-12941015)
chr2 (479-527)||(11670741-11670789)
chr2 (473-529)||(23718006-23718062)
chr2 (473-529)||(24105678-24105734)
chr2 (473-529)||(39323244-39323300)
chr2 (472-529)||(19536420-19536478)
chr2 (472-526)||(20539700-20539754)
chr2 (484-529)||(21782841-21782886)
chr2 (472-529)||(28412329-28412386)
chr2 (472-529)||(36756367-36756424)
chr2 (492-529)||(37411267-37411304)
chr2 (473-529)||(30404873-30404929)
[»] scaffold0223 (1 HSPs)
scaffold0223 (472-529)||(20151-20208)
[»] scaffold0103 (1 HSPs)
scaffold0103 (473-529)||(51791-51847)
[»] scaffold0049 (1 HSPs)
scaffold0049 (472-529)||(63751-63809)
[»] scaffold0018 (1 HSPs)
scaffold0018 (472-529)||(178841-178899)
[»] scaffold0027 (1 HSPs)
scaffold0027 (472-529)||(46661-46718)
[»] scaffold0008 (1 HSPs)
scaffold0008 (472-529)||(263395-263452)
[»] scaffold0361 (1 HSPs)
scaffold0361 (485-529)||(14522-14566)


Alignment Details
Target: chr3 (Bit Score: 335; Significance: 0; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 17 - 415
Target Start/End: Complemental strand, 11493959 - 11493574
Alignment:
Q  17 catttcttctatgattggctttaacattatcccgtttactacgtgcatggtccaattgcttatctttctttcgaagtttttcattaacattgcaaaagtt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11493959 catttcttctatgattggctttaacattatcccgtttactacgtgcatggtccaattgcttatctttctttcgaagtttttcattaacattgcaaaagtt 11493860  T
Q  117 aacgttccattgcgatgtaaaatcccaaatgaaagttatgatatctagagacagtaatatatgtggctcatgaagtgattgataaatcagttcaatttca 216  Q
    ||||||||||||||||||||||||||||||| ||||             ||||||||||||||||||||||||||||||||||||||||||||||||  |    
T  11493859 aacgttccattgcgatgtaaaatcccaaatgcaagt-------------gacagtaatatatgtggctcatgaagtgattgataaatcagttcaattcga 11493773  T
Q  217 atctcacagtgctggtgtatgtctgagctaataatctggatgctaatctaggttttatttgtcctcacgtcacgtccatatattagaaatattattgcag 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11493772 atctcacagtgctggtgtatgtctgagctaataatctggatgctaatctaggttttatttgtcctcacgtcacgtccatatattagaaatattattgcag 11493673  T
Q  317 tcccttagctaacattgatcaacatgcaaaataattagtgcagttctttttctatgacatatctgtctatgacttggaaattctgcaaagagatgtgtg 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  11493672 tcccttagctaacattgatcaacatgcaaaataattagtgcagttctttttctatgtaatatctgtctatgacttggaaattctgcaaagagatgtgtg 11493574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 410 - 529
Target Start/End: Complemental strand, 11493503 - 11493384
Alignment:
Q  410 tgtgtgtgaactgatatgcagatattttgaatttgttgataaactagtagcctgtgaagcaccgacacggacattgacacgtcgacaccactaataatgt 509  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11493503 tgtgtgtgaactgatatgcagatattttgaatttgttgataaactagtagcctgtgaagcaccgacacggacattgacacgtcgacaccactaataatgt 11493404  T
Q  510 gagaaaatcacataattcag 529  Q
    ||||||||||||||||||||    
T  11493403 gagaaaatcacataattcag 11493384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 472 - 529
Target Start/End: Original strand, 8383236 - 8383293
Alignment:
Q  472 cgacacggacattgacacgtcgacaccactaataatgtgagaaaatcacataattcag 529  Q
    ||||||||||||||||||| ||||||| |||||||| ||||||||||| |||||||||    
T  8383236 cgacacggacattgacacgccgacaccgctaataatttgagaaaatcatataattcag 8383293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 464 - 529
Target Start/End: Complemental strand, 29112368 - 29112303
Alignment:
Q  464 tgaagcaccgacacggacattgacacgtcgacaccactaataatgtgagaaaatcacataattcag 529  Q
    |||||||| || ||||||| |||||||| |||||||||||| || ||||||||||| |||||||||    
T  29112368 tgaagcacggatacggacactgacacgttgacaccactaattatttgagaaaatcatataattcag 29112303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 472 - 526
Target Start/End: Complemental strand, 2620133 - 2620079
Alignment:
Q  472 cgacacggacattgacacgtcgacaccactaataatgtgagaaaatcacataatt 526  Q
    |||| |||||| ||||||| ||||||||||||| || ||||||||||||||||||    
T  2620133 cgactcggacactgacacgccgacaccactaatcatttgagaaaatcacataatt 2620079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 475 - 529
Target Start/End: Original strand, 12703989 - 12704043
Alignment:
Q  475 cacggacattgacacgtcgacaccactaataatgtgagaaaatcacataattcag 529  Q
    |||||| || |||||| |||||||||||||||| |||||||| ||||||||||||    
T  12703989 cacggatatggacacgccgacaccactaataatttgagaaaagcacataattcag 12704043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 473 - 527
Target Start/End: Original strand, 24633747 - 24633800
Alignment:
Q  473 gacacggacattgacacgtcgacaccactaataatgtgagaaaatcacataattc 527  Q
    ||||||||||| |||| | |||||||||||||||| |||||||||||||||||||    
T  24633747 gacacggacat-gacatgccgacaccactaataatttgagaaaatcacataattc 24633800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 184 - 222
Target Start/End: Original strand, 28697007 - 28697045
Alignment:
Q  184 tcatgaagtgattgataaatcagttcaatttcaatctca 222  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  28697007 tcatgaagtgattgataaaacagttcaatttcaatctca 28697045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 472 - 529
Target Start/End: Complemental strand, 3164105 - 3164048
Alignment:
Q  472 cgacacggacattgacacgtcgacaccactaataatgtgagaaaatcacataattcag 529  Q
    ||||||||||| || |||||||||||  |||||||| ||| |||||||||||||||||    
T  3164105 cgacacggacaatggcacgtcgacacagctaataatttgaaaaaatcacataattcag 3164048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 464 - 529
Target Start/End: Complemental strand, 23870647 - 23870582
Alignment:
Q  464 tgaagcaccgacacggacattgacacgtcgacaccactaataatgtgagaaaatcacataattcag 529  Q
    |||||||| || |||||||  |||||||||||||| |||||||| ||| ||||||| |||||||||    
T  23870647 tgaagcacggatacggacacggacacgtcgacaccgctaataatttgaaaaaatcatataattcag 23870582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 473 - 529
Target Start/End: Original strand, 10954932 - 10954988
Alignment:
Q  473 gacacggacattgacacgtcgacaccactaataatgtgagaaaatcacataattcag 529  Q
    |||||| ||| ||||||| |||||| ||||||||| ||| |||||||||||||||||    
T  10954932 gacacgaacactgacacgccgacacaactaataatttgaaaaaatcacataattcag 10954988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 464 - 527
Target Start/End: Original strand, 18426920 - 18426983
Alignment:
Q  464 tgaagcaccgacacggacattgacacgtcgacaccactaataatgtgagaaaatcacataattc 527  Q
    |||||||| || |||||||  |||||| |||||||||||||||| | | |||||||||||||||    
T  18426920 tgaagcacagatacggacacggacacgccgacaccactaataatttcaaaaaatcacataattc 18426983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 464 - 529
Target Start/End: Complemental strand, 8413034 - 8412968
Alignment:
Q  464 tgaagcaccgacac-ggacattgacacgtcgacaccactaataatgtgagaaaatcacataattcag 529  Q
    |||||||| ||||| |||||||||||   |||||| ||||||||| |||||||| ||||||||||||    
T  8413034 tgaagcacggacaccggacattgacagaccgacacaactaataatttgagaaaaacacataattcag 8412968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 472 - 526
Target Start/End: Original strand, 25064888 - 25064942
Alignment:
Q  472 cgacacggacattgacacgtcgacaccactaataatgtgagaaaatcacataatt 526  Q
    |||||| |||||||||||| ||||||| ||||| || ||| ||||||||||||||    
T  25064888 cgacacagacattgacacgccgacaccgctaatgatttgaaaaaatcacataatt 25064942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 472 - 526
Target Start/End: Complemental strand, 32804620 - 32804566
Alignment:
Q  472 cgacacggacattgacacgtcgacaccactaataatgtgagaaaatcacataatt 526  Q
    |||||||| |||||||| | |||||||  ||||||| ||||||||||||||||||    
T  32804620 cgacacgggcattgacatgccgacaccgttaataatttgagaaaatcacataatt 32804566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 472 - 526
Target Start/End: Original strand, 55401054 - 55401108
Alignment:
Q  472 cgacacggacattgacacgtcgacaccactaataatgtgagaaaatcacataatt 526  Q
    ||||||||||| ||| ||| |||||| ||||||||| ||| ||||||||||||||    
T  55401054 cgacacggacactgatacgccgacacaactaataatttgaaaaaatcacataatt 55401108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 472 - 525
Target Start/End: Complemental strand, 12674581 - 12674528
Alignment:
Q  472 cgacacggacattgacacgtcgacaccactaataatgtgagaaaatcacataat 525  Q
    ||||||||||||||||||  ||||||  |||||||| ||||||||||| |||||    
T  12674581 cgacacggacattgacacaccgacactgctaataatttgagaaaatcaaataat 12674528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 472 - 529
Target Start/End: Original strand, 14216871 - 14216928
Alignment:
Q  472 cgacacggacattgacacgtcgacaccactaataatgtgagaaaatcacataattcag 529  Q
    ||||||||||| |||||||||||||| ||||||||| | | || |||| |||||||||    
T  14216871 cgacacggacactgacacgtcgacacaactaataattttaaaatatcatataattcag 14216928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 472 - 529
Target Start/End: Original strand, 14223000 - 14223057
Alignment:
Q  472 cgacacggacattgacacgtcgacaccactaataatgtgagaaaatcacataattcag 529  Q
    ||||||||||| |||||||||||||| ||||||||| | | || |||| |||||||||    
T  14223000 cgacacggacactgacacgtcgacacaactaataattttaaaatatcatataattcag 14223057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 464 - 529
Target Start/End: Complemental strand, 25948975 - 25948910
Alignment:
Q  464 tgaagcaccgacacggacattgacacgtcgacaccactaataatgtgagaaaatcacataattcag 529  Q
    |||||||| |||||||||| ||||| | ||| ||  |||||||| ||| |||||||||||||||||    
T  25948975 tgaagcacagacacggacactgacatgccgatacggctaataatttgaaaaaatcacataattcag 25948910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 485 - 526
Target Start/End: Complemental strand, 46191412 - 46191371
Alignment:
Q  485 gacacgtcgacaccactaataatgtgagaaaatcacataatt 526  Q
    ||||| ||||||||| ||||||| ||||||||||||||||||    
T  46191412 gacacatcgacaccaataataatttgagaaaatcacataatt 46191371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 472 - 527
Target Start/End: Complemental strand, 750699 - 750643
Alignment:
Q  472 cgacacggaca-ttgacacgtcgacaccactaataatgtgagaaaatcacataattc 527  Q
    ||||||||||| |||||||| |||||| ||||||||| ||| || ||||||||||||    
T  750699 cgacacggacacttgacacggcgacacaactaataatttgaaaatatcacataattc 750643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 472 - 528
Target Start/End: Complemental strand, 5441111 - 5441055
Alignment:
Q  472 cgacacggacattgacacgtcgacaccactaataatgtgagaaaatcacataattca 528  Q
    |||||| |||| ||||||| || |||| |||| ||| ||||||||||||||||||||    
T  5441111 cgacacagacactgacacgccgtcaccgctaaaaatttgagaaaatcacataattca 5441055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 493 - 529
Target Start/End: Complemental strand, 10690321 - 10690285
Alignment:
Q  493 gacaccactaataatgtgagaaaatcacataattcag 529  Q
    |||||| |||||||| |||||||||||||||||||||    
T  10690321 gacaccgctaataatctgagaaaatcacataattcag 10690285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 479 - 527
Target Start/End: Original strand, 15544679 - 15544727
Alignment:
Q  479 gacattgacacgtcgacaccactaataatgtgagaaaatcacataattc 527  Q
    |||| |||||||| |||||| |||||||| ||| |||||||||||||||    
T  15544679 gacactgacacgttgacaccgctaataatttgataaaatcacataattc 15544727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 479 - 523
Target Start/End: Original strand, 26290357 - 26290401
Alignment:
Q  479 gacattgacacgtcgacaccactaataatgtgagaaaatcacata 523  Q
    |||| ||||||| |||||||| ||||||| |||||||||||||||    
T  26290357 gacactgacacgccgacaccattaataatttgagaaaatcacata 26290401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 28 - 128
Target Start/End: Original strand, 28696907 - 28697006
Alignment:
Q  28 tgattggctttaacattatcccgtttactacgtgcatggtccaattgcttatctttctttcgaagtttttcattaacattgcaaaagttaacgttccatt 127  Q
    ||||||| ||||| || || || ||||||| ||||||||||||| |||| ||||||||||| ||||| ||    || |||||||| ||||| ||||||||    
T  28696907 tgattggttttaaaatgattccttttactatgtgcatggtccaa-tgctcatctttctttccaagttatttgcaaatattgcaaatgttaatgttccatt 28697005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 473 - 529
Target Start/End: Original strand, 29508424 - 29508480
Alignment:
Q  473 gacacggacattgacacgtcgacaccactaataatgtgagaaaatcacataattcag 529  Q
    |||| ||||||||||||  ||| |||||||||||| ||| ||||||| |||||||||    
T  29508424 gacatggacattgacacaccgataccactaataatttgaaaaaatcatataattcag 29508480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 485 - 529
Target Start/End: Original strand, 34910309 - 34910353
Alignment:
Q  485 gacacgtcgacaccactaataatgtgagaaaatcacataattcag 529  Q
    |||||| |||||| ||||||||| ||| |||||||||||||||||    
T  34910309 gacacgccgacacaactaataatttgaaaaaatcacataattcag 34910353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 473 - 528
Target Start/End: Original strand, 26373 - 26428
Alignment:
Q  473 gacacggacattgacacgtcgacaccactaataatgtgagaaaatcacataattca 528  Q
    ||||| |||| |||||||||||||||||||||||| ||||||||||||||||||||    
T  26373 gacacagacagtgacacgtcgacaccactaataatttgagaaaatcacataattca 26428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 472 - 529
Target Start/End: Original strand, 26733283 - 26733340
Alignment:
Q  472 cgacacggacattgacacgtcgacaccactaataatgtgagaaaatcacataattcag 529  Q
    ||||||||||| ||||||||||||||| |||||||| ||| |||||||||||||||||    
T  26733283 cgacacggacactgacacgtcgacaccgctaataatttgacaaaatcacataattcag 26733340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 472 - 529
Target Start/End: Original strand, 27945020 - 27945077
Alignment:
Q  472 cgacacggacattgacacgtcgacaccactaataatgtgagaaaatcacataattcag 529  Q
    ||||||||||| ||||||| |||||||||||||||| ||||||||| |||||||||||    
T  27945020 cgacacggacactgacacgccgacaccactaataatttgagaaaattacataattcag 27945077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 474 - 529
Target Start/End: Original strand, 22868023 - 22868078
Alignment:
Q  474 acacggacattgacacgtcgacaccactaataatgtgagaaaatcacataattcag 529  Q
    |||| |||| ||||||| |||||||||||||||| |||||||||||||||||||||    
T  22868023 acaccgacactgacacgccgacaccactaataatatgagaaaatcacataattcag 22868078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 474 - 529
Target Start/End: Complemental strand, 29787447 - 29787392
Alignment:
Q  474 acacggacattgacacgtcgacaccactaataatgtgagaaaatcacataattcag 529  Q
    ||||||||||| ||||| ||||||| |||||||| |||||||||||||||||||||    
T  29787447 acacggacattaacacgccgacaccgctaataatttgagaaaatcacataattcag 29787392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 184 - 226
Target Start/End: Complemental strand, 3367209 - 3367167
Alignment:
Q  184 tcatgaagtgattgataaatcagttcaatttcaatctcacagt 226  Q
    ||||||||||||||||||| |||||||||||||||||||||||    
T  3367209 tcatgaagtgattgataaaacagttcaatttcaatctcacagt 3367167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 472 - 530
Target Start/End: Complemental strand, 11722178 - 11722120
Alignment:
Q  472 cgacacggacattgacacgtcgacaccactaataatgtgagaaaatcacataattcagg 530  Q
    ||||||||||| ||||||| ||||||| |||| ||| ||||||||||||||||||||||    
T  11722178 cgacacggacactgacacgccgacaccgctaacaatttgagaaaatcacataattcagg 11722120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 28 - 128
Target Start/End: Complemental strand, 3367309 - 3367210
Alignment:
Q  28 tgattggctttaacattatcccgtttactacgtgcatggtccaattgcttatctttctttcgaagtttttcattaacattgcaaaagttaacgttccatt 127  Q
    ||||||| ||||| || || || ||||||| |||||||||||||| ||| ||||||||||| |||||||| |  || |||||||| ||||| ||||||||    
T  3367309 tgattggttttaaaatgattccttttactatgtgcatggtccaat-gctcatctttctttccaagttttttacaaatattgcaaatgttaatgttccatt 3367211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 479 - 526
Target Start/End: Original strand, 5307246 - 5307293
Alignment:
Q  479 gacattgacacgtcgacaccactaataatgtgagaaaatcacataatt 526  Q
    |||||||||||| |||||||||| ||||| ||||||||||||||||||    
T  5307246 gacattgacacgccgacaccacttataatttgagaaaatcacataatt 5307293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 478 - 529
Target Start/End: Original strand, 32308105 - 32308156
Alignment:
Q  478 ggacattgacacgtcgacaccactaataatgtgagaaaatcacataattcag 529  Q
    ||||| ||||||| ||||||| |||||||| |||||||||||||||||||||    
T  32308105 ggacactgacacgccgacaccgctaataatttgagaaaatcacataattcag 32308156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 472 - 522
Target Start/End: Original strand, 1433433 - 1433483
Alignment:
Q  472 cgacacggacattgacacgtcgacaccactaataatgtgagaaaatcacat 522  Q
    ||||||||||||||||||| |||||||  ||||||| ||||||||||||||    
T  1433433 cgacacggacattgacacgccgacaccgttaataatttgagaaaatcacat 1433483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 472 - 529
Target Start/End: Complemental strand, 21141062 - 21141005
Alignment:
Q  472 cgacacggacattgacacgtcgacaccactaataatgtgagaaaatcacataattcag 529  Q
    ||||||||||   ||||||||||||||||||||||| | ||||||||| |||||||||    
T  21141062 cgacacggacgccgacacgtcgacaccactaataatttaagaaaatcatataattcag 21141005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 472 - 529
Target Start/End: Original strand, 24339621 - 24339678
Alignment:
Q  472 cgacacggacattgacacgtcgacaccactaataatgtgagaaaatcacataattcag 529  Q
    ||||| ||||||||||||| ||||||  |||||||| ||| |||||||||||||||||    
T  24339621 cgacatggacattgacacgccgacacagctaataatttgaaaaaatcacataattcag 24339678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 472 - 528
Target Start/End: Original strand, 19206029 - 19206085
Alignment:
Q  472 cgacacggacattgacacgtcgacaccactaataatgtgagaaaatcacataattca 528  Q
    |||||||||||   ||||| ||||||| |||||||| ||||||||||||||||||||    
T  19206029 cgacacggacaccaacacgccgacaccgctaataatttgagaaaatcacataattca 19206085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 472 - 528
Target Start/End: Complemental strand, 36297424 - 36297369
Alignment:
Q  472 cgacacggacattgacacgtcgacaccactaataatgtgagaaaatcacataattca 528  Q
    |||||||||||||||||| |||||||  |||||||| | ||||||||||||||||||    
T  36297424 cgacacggacattgacac-tcgacacggctaataatttaagaaaatcacataattca 36297369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 490 - 529
Target Start/End: Complemental strand, 32287525 - 32287486
Alignment:
Q  490 gtcgacaccactaataatgtgagaaaatcacataattcag 529  Q
    ||||||||| |||||||| |||||||||||||||||||||    
T  32287525 gtcgacaccgctaataatctgagaaaatcacataattcag 32287486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 472 - 526
Target Start/End: Original strand, 2034420 - 2034474
Alignment:
Q  472 cgacacggacattgacacgtcgacaccactaataatgtgagaaaatcacataatt 526  Q
    ||||||||| | | |||||||||||||||||||||| |||||| |||| ||||||    
T  2034420 cgacacggatacttacacgtcgacaccactaataatttgagaatatcatataatt 2034474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 479 - 529
Target Start/End: Complemental strand, 6630985 - 6630935
Alignment:
Q  479 gacattgacacgtcgacaccactaataatgtgagaaaatcacataattcag 529  Q
    |||| ||||||| |||||||||||||||| ||||||| |||| ||||||||    
T  6630985 gacactgacacgccgacaccactaataatttgagaaagtcacttaattcag 6630935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 472 - 526
Target Start/End: Original strand, 10042916 - 10042970
Alignment:
Q  472 cgacacggacattgacacgtcgacaccactaataatgtgagaaaatcacataatt 526  Q
    ||||||||||| | ||||| |||||||||||||||| ||| ||| ||||||||||    
T  10042916 cgacacggacacttacacgccgacaccactaataatttgataaattcacataatt 10042970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 476 - 529
Target Start/End: Original strand, 23191879 - 23191932
Alignment:
Q  476 acggacattgacacgtcgacaccactaataatgtgagaaaatcacataattcag 529  Q
    ||||||| ||| ||| ||||||| |||||||| ||||||||||||||| |||||    
T  23191879 acggacactgatacgccgacaccgctaataatttgagaaaatcacatatttcag 23191932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 469 - 529
Target Start/End: Original strand, 23930195 - 23930255
Alignment:
Q  469 caccgacacggacattgacacgtcgacaccactaataatgtgagaaaatcacataattcag 529  Q
    ||||||||| ||||||||||| |||||||   || |||| ||||||||| |||||||||||    
T  23930195 caccgacaccgacattgacacatcgacacggatagtaatttgagaaaatgacataattcag 23930255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 486 - 522
Target Start/End: Original strand, 28401136 - 28401172
Alignment:
Q  486 acacgtcgacaccactaataatgtgagaaaatcacat 522  Q
    |||||||||||| ||||||||| ||||||||||||||    
T  28401136 acacgtcgacactactaataatttgagaaaatcacat 28401172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 472 - 529
Target Start/End: Complemental strand, 20157430 - 20157373
Alignment:
Q  472 cgacacggacattgacacgtcgacaccactaataatgtgagaaaatcacataattcag 529  Q
    |||||||| || |||||| |||||||| ||||||||||||||||||||||||||||||    
T  20157430 cgacacgggcactgacacatcgacaccgctaataatgtgagaaaatcacataattcag 20157373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 474 - 529
Target Start/End: Complemental strand, 2896199 - 2896144
Alignment:
Q  474 acacggacattgacacgtcgacaccactaataatgtgagaaaatcacataattcag 529  Q
    ||||||||| ||||||| ||||||| |||||||| |||||||||||||||||||||    
T  2896199 acacggacactgacacgccgacaccgctaataatttgagaaaatcacataattcag 2896144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 479 - 541
Target Start/End: Complemental strand, 10475050 - 10474989
Alignment:
Q  479 gacattgacacgtcgacaccactaataatgtgagaaaatcacataattcaggtgtcgtgtcgg 541  Q
    |||||||||||| ||||||| |||||||  |||||||||||||||||||| ||||||||||||    
T  10475050 gacattgacacgccgacaccgctaataacttgagaaaatcacataattca-gtgtcgtgtcgg 10474989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 472 - 529
Target Start/End: Complemental strand, 398845 - 398788
Alignment:
Q  472 cgacacggacattgacacgtcgacaccactaataatgtgagaaaatcacataattcag 529  Q
    ||||||||||| ||||||| ||||||| |||||||| ||| |||||||||||||||||    
T  398845 cgacacggacactgacacgccgacaccgctaataatttgaaaaaatcacataattcag 398788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 472 - 529
Target Start/End: Original strand, 34298415 - 34298472
Alignment:
Q  472 cgacacggacattgacacgtcgacaccactaataatgtgagaaaatcacataattcag 529  Q
    ||||||||| | ||||||  |||||||||||||||| |||||||||||||||||||||    
T  34298415 cgacacggaaactgacacaccgacaccactaataatttgagaaaatcacataattcag 34298472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 484 - 527
Target Start/End: Complemental strand, 10572657 - 10572614
Alignment:
Q  484 tgacacgtcgacaccactaataatgtgagaaaatcacataattc 527  Q
    ||||||| |||||||||||||||| |||||||||||||||||||    
T  10572657 tgacacgccgacaccactaataatttgagaaaatcacataattc 10572614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 479 - 529
Target Start/End: Original strand, 36878447 - 36878497
Alignment:
Q  479 gacattgacacgtcgacaccactaataatgtgagaaaatcacataattcag 529  Q
    |||| ||||||| ||||||| |||||||| |||||||||||||||||||||    
T  36878447 gacactgacacgccgacaccgctaataatttgagaaaatcacataattcag 36878497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 475 - 528
Target Start/End: Original strand, 6427332 - 6427385
Alignment:
Q  475 cacggacattgacacgtcgacaccactaataatgtgagaaaatcacataattca 528  Q
    |||||||| ||||||| | ||||| |||||||| ||||||||||||||||||||    
T  6427332 cacggacactgacacgccaacaccgctaataatttgagaaaatcacataattca 6427385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 472 - 529
Target Start/End: Complemental strand, 7918291 - 7918234
Alignment:
Q  472 cgacacggacattgacacgtcgacaccactaataatgtgagaaaatcacataattcag 529  Q
    |||||| |||| |||||||  |||| |||||||||| |||||||||||||||||||||    
T  7918291 cgacacagacaatgacacgctgacatcactaataatttgagaaaatcacataattcag 7918234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 484 - 528
Target Start/End: Complemental strand, 609526 - 609482
Alignment:
Q  484 tgacacgtcgacaccactaataatgtgagaaaatcacataattca 528  Q
    ||||||| |||||||||||||||| ||||||||| ||||||||||    
T  609526 tgacacgccgacaccactaataatttgagaaaattacataattca 609482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 485 - 529
Target Start/End: Original strand, 9828036 - 9828080
Alignment:
Q  485 gacacgtcgacaccactaataatgtgagaaaatcacataattcag 529  Q
    |||||| |||||||||||||||| ||| |||||||||||||||||    
T  9828036 gacacgccgacaccactaataatttgataaaatcacataattcag 9828080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 473 - 529
Target Start/End: Original strand, 16812523 - 16812579
Alignment:
Q  473 gacacggacattgacacgtcgacaccactaataatgtgagaaaatcacataattcag 529  Q
    |||||||||| ||||||  |||||||| ||||||| ||| |||||||||||||||||    
T  16812523 gacacggacactgacacaccgacaccaataataatttgacaaaatcacataattcag 16812579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 475 - 529
Target Start/End: Complemental strand, 9033085 - 9033030
Alignment:
Q  475 cacggacattgacacgtcgacaccactaataatgtg-agaaaatcacataattcag 529  Q
    |||||||| ||||||||| |||||||||||||| || | |||||||||||||||||    
T  9033085 cacggacactgacacgtcaacaccactaataatttgaaaaaaatcacataattcag 9033030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 472 - 527
Target Start/End: Original strand, 9709799 - 9709854
Alignment:
Q  472 cgacacggacattgacacgtcgacaccactaataatgtgagaaaatcacataattc 527  Q
    ||||||||||| ||||| | | ||||| |||||||| |||||||||||||||||||    
T  9709799 cgacacggacactgacatgcctacaccgctaataatttgagaaaatcacataattc 9709854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 473 - 528
Target Start/End: Complemental strand, 38078740 - 38078685
Alignment:
Q  473 gacacggacattgacacgtcgacaccactaataatgtgagaaaatcacataattca 528  Q
    |||||| ||| ||||||||||||||  |||||||| ||| ||||||||||||||||    
T  38078740 gacacgaacactgacacgtcgacacagctaataatttgaaaaaatcacataattca 38078685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 479 - 529
Target Start/End: Complemental strand, 17831604 - 17831554
Alignment:
Q  479 gacattgacacgtcgacaccactaataatgtgagaaaatcacataattcag 529  Q
    |||| ||||||| ||||||| |||||||| |||||||||||||| ||||||    
T  17831604 gacactgacacgccgacaccgctaataatttgagaaaatcacattattcag 17831554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 472 - 529
Target Start/End: Complemental strand, 5376580 - 5376523
Alignment:
Q  472 cgacacggacattgacacgtcgacaccactaataatgtgagaaaatcacataattcag 529  Q
    ||||||||||| | ||||| ||||||| |||||||| | ||||||| |||||||||||    
T  5376580 cgacacggacactaacacgccgacaccgctaataatttaagaaaataacataattcag 5376523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 472 - 529
Target Start/End: Complemental strand, 23636129 - 23636072
Alignment:
Q  472 cgacacggacattgacacgtcgacaccactaataatgtgagaaaatcacataattcag 529  Q
    ||||||||||||||||||| ||| ||| | || ||| ||||||||| |||||||||||    
T  23636129 cgacacggacattgacacgccgaaaccgccaaaaatttgagaaaattacataattcag 23636072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 492 - 529
Target Start/End: Original strand, 25361885 - 25361922
Alignment:
Q  492 cgacaccactaataatgtgagaaaatcacataattcag 529  Q
    |||||||||| ||||| |||||||||||||||||||||    
T  25361885 cgacaccactgataatttgagaaaatcacataattcag 25361922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 472 - 528
Target Start/End: Original strand, 1262863 - 1262919
Alignment:
Q  472 cgacacggacattgacacgtcgacaccactaataatgtgagaaaatcacataattca 528  Q
    ||||||| |||  |||||| ||||||  |||||||| ||||||||||||||||||||    
T  1262863 cgacacgaacacggacacgccgacacagctaataatttgagaaaatcacataattca 1262919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 473 - 529
Target Start/End: Complemental strand, 5898345 - 5898289
Alignment:
Q  473 gacacggacattgacacgtcgacaccactaataatgtgagaaaatcacataattcag 529  Q
    ||||| |||| ||| ||| ||||||| |||||||| ||| |||||||||||||||||    
T  5898345 gacacagacactgagacgccgacaccgctaataatctgaaaaaatcacataattcag 5898289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 473 - 525
Target Start/End: Complemental strand, 6415080 - 6415028
Alignment:
Q  473 gacacggacattgacacgtcgacaccactaataatgtgagaaaatcacataat 525  Q
    |||||||||| ||||||| ||||| | ||||| || |||||||||||||||||    
T  6415080 gacacggacactgacacgccgacatcgctaattatttgagaaaatcacataat 6415028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 485 - 529
Target Start/End: Complemental strand, 12443527 - 12443483
Alignment:
Q  485 gacacgtcgacaccactaataatgtgagaaaatcacataattcag 529  Q
    |||||| ||||||  |||||||| |||||||||||||||||||||    
T  12443527 gacacgccgacacagctaataatttgagaaaatcacataattcag 12443483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 494 - 526
Target Start/End: Complemental strand, 14332700 - 14332668
Alignment:
Q  494 acaccactaataatgtgagaaaatcacataatt 526  Q
    |||||||||||||| ||||||||||||||||||    
T  14332700 acaccactaataatttgagaaaatcacataatt 14332668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 476 - 524
Target Start/End: Complemental strand, 28268240 - 28268192
Alignment:
Q  476 acggacattgacacgtcgacaccactaataatgtgagaaaatcacataa 524  Q
    ||||||| | |||| ||||||||||||| ||| ||||||||||||||||    
T  28268240 acggacactaacacatcgacaccactaaaaatttgagaaaatcacataa 28268192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0306 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 473 - 529
Target Start/End: Original strand, 13380 - 13436
Alignment:
Q  473 gacacggacattgacacgtcgacaccactaataatgtgagaaaatcacataattcag 529  Q
    |||||||||| ||||||| |||||| ||||||||| |||||||||||||||||||||    
T  13380 gacacggacactgacacgccgacacaactaataatttgagaaaatcacataattcag 13436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 473 - 529
Target Start/End: Complemental strand, 21947 - 21891
Alignment:
Q  473 gacacggacattgacacgtcgacaccactaataatgtgagaaaatcacataattcag 529  Q
    |||||||||| ||||||| |||||| ||||||||| |||||||||||||||||||||    
T  21947 gacacggacactgacacgccgacacaactaataatttgagaaaatcacataattcag 21891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 23)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 473 - 524
Target Start/End: Complemental strand, 20371189 - 20371138
Alignment:
Q  473 gacacggacattgacacgtcgacaccactaataatgtgagaaaatcacataa 524  Q
    |||||||||||||||||| ||||||| |||||||| ||||||||||||||||    
T  20371189 gacacggacattgacacgccgacaccgctaataatttgagaaaatcacataa 20371138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 472 - 529
Target Start/End: Original strand, 9658858 - 9658915
Alignment:
Q  472 cgacacggacattgacacgtcgacaccactaataatgtgagaaaatcacataattcag 529  Q
    ||||||||||| ||||||| ||||||| |||||||| | |||||||||||||||||||    
T  9658858 cgacacggacactgacacgccgacaccgctaataatttaagaaaatcacataattcag 9658915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 472 - 529
Target Start/End: Original strand, 13851715 - 13851772
Alignment:
Q  472 cgacacggacattgacacgtcgacaccactaataatgtgagaaaatcacataattcag 529  Q
    ||||||||||| ||||||||||||||| |||||||| ||||||||| || ||||||||    
T  13851715 cgacacggacactgacacgtcgacaccgctaataatttgagaaaataacgtaattcag 13851772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 472 - 529
Target Start/End: Original strand, 34595113 - 34595170
Alignment:
Q  472 cgacacggacattgacacgtcgacaccactaataatgtgagaaaatcacataattcag 529  Q
    ||||||||||| ||||||| |||||| ||||||||| ||| |||||||||||||||||    
T  34595113 cgacacggacaatgacacgccgacacaactaataatttgaaaaaatcacataattcag 34595170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 472 - 528
Target Start/End: Original strand, 9629362 - 9629418
Alignment:
Q  472 cgacacggacattgacacgtcgacaccactaataatgtgagaaaatcacataattca 528  Q
    ||||||||| ||||||||| ||||||| | |||||| ||||||||||||||||||||    
T  9629362 cgacacggatattgacacgccgacaccgccaataatttgagaaaatcacataattca 9629418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 485 - 529
Target Start/End: Complemental strand, 13360439 - 13360395
Alignment:
Q  485 gacacgtcgacaccactaataatgtgagaaaatcacataattcag 529  Q
    |||||||||||||||||| |||| |||||||||||||||||||||    
T  13360439 gacacgtcgacaccactagtaatttgagaaaatcacataattcag 13360395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 472 - 527
Target Start/End: Original strand, 9027157 - 9027212
Alignment:
Q  472 cgacacggacattgacacgtcgacaccactaataatgtgagaaaatcacataattc 527  Q
    ||||||||||| ||||||| ||||||| |||||||| ||||| |||||||||||||    
T  9027157 cgacacggacactgacacgccgacaccgctaataatttgagataatcacataattc 9027212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 184 - 222
Target Start/End: Original strand, 16720148 - 16720186
Alignment:
Q  184 tcatgaagtgattgataaatcagttcaatttcaatctca 222  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  16720148 tcatgaagtgattgataaaacagttcaatttcaatctca 16720186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 472 - 529
Target Start/End: Complemental strand, 8777053 - 8776996
Alignment:
Q  472 cgacacggacattgacacgtcgacaccactaataatgtgagaaaatcacataattcag 529  Q
    ||||||||||| ||||||| |||||| ||||||||| ||| ||||||||| |||||||    
T  8777053 cgacacggacactgacacgccgacacaactaataatttgaaaaaatcacaaaattcag 8776996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 484 - 529
Target Start/End: Original strand, 19040343 - 19040388
Alignment:
Q  484 tgacacgtcgacaccactaataatgtgagaaaatcacataattcag 529  Q
    ||||||| ||||||| |||||||| |||||||||||||||||||||    
T  19040343 tgacacgccgacaccgctaataatttgagaaaatcacataattcag 19040388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 472 - 529
Target Start/End: Original strand, 19044443 - 19044500
Alignment:
Q  472 cgacacggacattgacacgtcgacaccactaataatgtgagaaaatcacataattcag 529  Q
    ||||| ||||| ||||||| |||||| ||||||||| |||||| ||||||||||||||    
T  19044443 cgacatggacactgacacgccgacacgactaataatttgagaatatcacataattcag 19044500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 473 - 529
Target Start/End: Complemental strand, 5000705 - 5000649
Alignment:
Q  473 gacacggacattgacacgtcgacaccactaataatgtgagaaaatcacataattcag 529  Q
    |||||||| | ||||||||||||||| ||||||||  ||||||||||||| ||||||    
T  5000705 gacacggatactgacacgtcgacaccgctaataattcgagaaaatcacatgattcag 5000649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 477 - 529
Target Start/End: Complemental strand, 7265668 - 7265616
Alignment:
Q  477 cggacattgacacgtcgacaccactaataatgtgagaaaatcacataattcag 529  Q
    |||||| ||||||| | ||||| |||||||| |||||||||||||||||||||    
T  7265668 cggacactgacacgccaacaccgctaataatttgagaaaatcacataattcag 7265616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 28 - 128
Target Start/End: Original strand, 16720048 - 16720147
Alignment:
Q  28 tgattggctttaacattatcccgtttactacgtgcatggtccaattgcttatctttctttcgaagtttttcattaacattgcaaaagttaacgttccatt 127  Q
    ||||||| ||||| || || || ||||||| ||||||||||||| |||| ||||||||||| ||||||||    || |||||||| ||||| ||||||||    
T  16720048 tgattggttttaaaatgattccttttactatgtgcatggtccaa-tgctcatctttctttccaagttttttgcaaatattgcaaatgttaatgttccatt 16720146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 485 - 525
Target Start/End: Original strand, 25096415 - 25096455
Alignment:
Q  485 gacacgtcgacaccactaataatgtgagaaaatcacataat 525  Q
    |||||| |||||||||||||||| |||||||||||||||||    
T  25096415 gacacgacgacaccactaataatttgagaaaatcacataat 25096455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 472 - 527
Target Start/End: Complemental strand, 8365599 - 8365544
Alignment:
Q  472 cgacacggacattgacacgtcgacaccactaataatgtgagaaaatcacataattc 527  Q
    ||||||||||| ||||||| |||||| ||||||||| ||| || ||||||||||||    
T  8365599 cgacacggacactgacacgccgacacaactaataatttgaaaatatcacataattc 8365544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 473 - 528
Target Start/End: Original strand, 15443675 - 15443730
Alignment:
Q  473 gacacggacattgacacgtcgacaccactaataatgtgagaaaatcacataattca 528  Q
    |||||| ||| ||||||||||||| || ||||||| ||||||||| ||||||||||    
T  15443675 gacacgaacactgacacgtcgacatcaataataatttgagaaaataacataattca 15443730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 472 - 529
Target Start/End: Complemental strand, 10770754 - 10770697
Alignment:
Q  472 cgacacggacattgacacgtcgacaccactaataatgtgagaaaatcacataattcag 529  Q
    ||||| ||||| ||||||| | |||| ||||||||| ||| |||||||||||||||||    
T  10770754 cgacatggacactgacacgccaacacaactaataatttgaaaaaatcacataattcag 10770697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 472 - 529
Target Start/End: Original strand, 12696303 - 12696360
Alignment:
Q  472 cgacacggacattgacacgtcgacaccactaataatgtgagaaaatcacataattcag 529  Q
    ||||||||||| ||||||| ||||||  |||||||| ||| ||||| |||||||||||    
T  12696303 cgacacggacactgacacgccgacacagctaataatttgaaaaaattacataattcag 12696360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 472 - 529
Target Start/End: Original strand, 16766676 - 16766733
Alignment:
Q  472 cgacacggacattgacacgtcgacaccactaataatgtgagaaaatcacataattcag 529  Q
    ||||| ||||| ||||||| ||||||  |||||||| ||| |||||||||||||||||    
T  16766676 cgacatggacactgacacgccgacacagctaataatttgaaaaaatcacataattcag 16766733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 472 - 529
Target Start/End: Original strand, 16833287 - 16833344
Alignment:
Q  472 cgacacggacattgacacgtcgacaccactaataatgtgagaaaatcacataattcag 529  Q
    |||||| |||| ||||||| |||||| ||||||||| ||| ||||||||||| |||||    
T  16833287 cgacacagacactgacacgccgacacaactaataatttgaaaaaatcacatacttcag 16833344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 472 - 529
Target Start/End: Complemental strand, 17341744 - 17341687
Alignment:
Q  472 cgacacggacattgacacgtcgacaccactaataatgtgagaaaatcacataattcag 529  Q
    |||||||| || ||||||| |||||||  ||||||| ||| |||||||||||||||||    
T  17341744 cgacacgggcactgacacgccgacaccgttaataatttgataaaatcacataattcag 17341687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 473 - 526
Target Start/End: Complemental strand, 17841668 - 17841615
Alignment:
Q  473 gacacggacattgacacgtcgacaccactaataatgtgagaaaatcacataatt 526  Q
    |||||||||| ||||||| ||||||  |||||||| ||| ||||||||||||||    
T  17841668 gacacggacactgacacgccgacacagctaataatttgaaaaaatcacataatt 17841615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 470 - 528
Target Start/End: Original strand, 9449446 - 9449504
Alignment:
Q  470 accgacacggacattgacacgtcgacaccactaataatgtgagaaaatcacataattca 528  Q
    ||||||||||||| || |||| |||||||| ||||||| ||||||||||||||||||||    
T  9449446 accgacacggacactggcacgccgacaccaataataatttgagaaaatcacataattca 9449504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 473 - 526
Target Start/End: Complemental strand, 7175098 - 7175045
Alignment:
Q  473 gacacggacattgacacgtcgacaccactaataatgtgagaaaatcacataatt 526  Q
    |||||||||| |||||| ||||||||  ||||||| ||||||||||||||||||    
T  7175098 gacacggacactgacacatcgacaccgttaataatttgagaaaatcacataatt 7175045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 480 - 529
Target Start/End: Complemental strand, 28588746 - 28588697
Alignment:
Q  480 acattgacacgtcgacaccactaataatgtgagaaaatcacataattcag 529  Q
    ||||||||||| |||||||  ||||||| |||||||||||||||||||||    
T  28588746 acattgacacgccgacaccggtaataatttgagaaaatcacataattcag 28588697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 472 - 529
Target Start/End: Complemental strand, 6326377 - 6326320
Alignment:
Q  472 cgacacggacattgacacgtcgacaccactaataatgtgagaaaatcacataattcag 529  Q
    ||||||||||| ||||||| ||||| | ||| |||| ||||||||| |||||||||||    
T  6326377 cgacacggacactgacacgccgacatcgctagtaatttgagaaaattacataattcag 6326320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 472 - 529
Target Start/End: Complemental strand, 13287479 - 13287422
Alignment:
Q  472 cgacacggacattgacacgtcgacaccactaataatgtgagaaaatcacataattcag 529  Q
    ||||||||||| | ||||||||||||   ||||||| ||| |||||||||||||||||    
T  13287479 cgacacggacactaacacgtcgacacagataataatttgaaaaaatcacataattcag 13287422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 473 - 526
Target Start/End: Original strand, 14674249 - 14674302
Alignment:
Q  473 gacacggacattgacacgtcgacaccactaataatgtgagaaaatcacataatt 526  Q
    |||||||||| ||||||| ||||||  |||||||| ||| ||||||||||||||    
T  14674249 gacacggacactgacacgccgacacagctaataatttgaaaaaatcacataatt 14674302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 472 - 529
Target Start/End: Complemental strand, 21191136 - 21191079
Alignment:
Q  472 cgacacggacattgacacgtcgacaccactaataatgtgagaaaatcacataattcag 529  Q
    ||||||||||| ||||| | ||||||  |||||||| ||| |||||||||||||||||    
T  21191136 cgacacggacactgacatgccgacacagctaataatttgaaaaaatcacataattcag 21191079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 473 - 526
Target Start/End: Original strand, 27144443 - 27144496
Alignment:
Q  473 gacacggacattgacacgtcgacaccactaataatgtgagaaaatcacataatt 526  Q
    ||||| |||| ||||||| ||||||| |||||||| |||| |||||||||||||    
T  27144443 gacacagacactgacacgccgacaccgctaataatttgaggaaatcacataatt 27144496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 464 - 528
Target Start/End: Original strand, 30098296 - 30098361
Alignment:
Q  464 tgaagcaccgacac-ggacattgacacgtcgacaccactaataatgtgagaaaatcacataattca 528  Q
    |||||||| ||||| ||||| ||||||| ||| |||  ||||||| ||||||||||||||||||||    
T  30098296 tgaagcacggacaccggacactgacacgacgaaaccgttaataatttgagaaaatcacataattca 30098361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 485 - 526
Target Start/End: Original strand, 35017029 - 35017070
Alignment:
Q  485 gacacgtcgacaccactaataatgtgagaaaatcacataatt 526  Q
    |||||| ||| |||||||||||| ||||||||||||||||||    
T  35017029 gacacgccgaaaccactaataatttgagaaaatcacataatt 35017070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 464 - 529
Target Start/End: Original strand, 39698512 - 39698577
Alignment:
Q  464 tgaagcaccgacacggacattgacacgtcgacaccactaataatgtgagaaaatcacataattcag 529  Q
    |||||||| || ||||||| |||||||  |||||  |||||||| ||| |||||||||||||||||    
T  39698512 tgaagcacggatacggacactgacacgctgacacagctaataatttgaaaaaatcacataattcag 39698577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 472 - 529
Target Start/End: Complemental strand, 40000615 - 40000558
Alignment:
Q  472 cgacacggacattgacacgtcgacaccactaataatgtgagaaaatcacataattcag 529  Q
    ||||||||||| ||||| ||||||||   ||||||| ||| |||||||||||||||||    
T  40000615 cgacacggacactgacatgtcgacactcttaataatttgaaaaaatcacataattcag 40000558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 473 - 529
Target Start/End: Original strand, 6770523 - 6770579
Alignment:
Q  473 gacacggacattgacacgtcgacaccactaataatgtgagaaaatcacataattcag 529  Q
    |||||||||| ||||||   ||||| ||||||||| | |||||||||||||||||||    
T  6770523 gacacggacactgacacactgacacaactaataatttaagaaaatcacataattcag 6770579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 474 - 526
Target Start/End: Original strand, 19579682 - 19579734
Alignment:
Q  474 acacggacattgacacgtcgacaccactaataatgtgagaaaatcacataatt 526  Q
    ||||||||| ||| ||| ||||||  |||||||| ||||||||||||||||||    
T  19579682 acacggacactgatacgccgacacagctaataatttgagaaaatcacataatt 19579734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 472 - 528
Target Start/End: Complemental strand, 22423892 - 22423836
Alignment:
Q  472 cgacacggacattgacacgtcgacaccactaataatgtgagaaaatcacataattca 528  Q
    ||||||||| | ||||||   ||||| ||||||||| ||||||||||||||||||||    
T  22423892 cgacacggatactgacaccctgacactactaataatttgagaaaatcacataattca 22423836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 479 - 527
Target Start/End: Original strand, 26716130 - 26716178
Alignment:
Q  479 gacattgacacgtcgacaccactaataatgtgagaaaatcacataattc 527  Q
    |||||||||| | ||||||  |||||||| |||||||||||||||||||    
T  26716130 gacattgacatgccgacactgctaataatttgagaaaatcacataattc 26716178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 479 - 527
Target Start/End: Original strand, 26985870 - 26985918
Alignment:
Q  479 gacattgacacgtcgacaccactaataatgtgagaaaatcacataattc 527  Q
    |||||||||| | ||||||  |||||||| |||||||||||||||||||    
T  26985870 gacattgacatgccgacactgctaataatttgagaaaatcacataattc 26985918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 472 - 528
Target Start/End: Complemental strand, 41558763 - 41558707
Alignment:
Q  472 cgacacggacattgacacgtcgacaccactaataatgtgagaaaatcacataattca 528  Q
    ||||||||||| |||||| | ||||| | ||||||| ||||||||| ||||||||||    
T  41558763 cgacacggacactgacacattgacacaaataataatttgagaaaatgacataattca 41558707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 472 - 528
Target Start/End: Original strand, 41995450 - 41995506
Alignment:
Q  472 cgacacggacattgacacgtcgacaccactaataatgtgagaaaatcacataattca 528  Q
    |||||| |||| ||||||| |||||| |||||||||  || ||||||||||||||||    
T  41995450 cgacacagacactgacacgccgacacaactaataattcgaaaaaatcacataattca 41995506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 473 - 529
Target Start/End: Original strand, 43001780 - 43001836
Alignment:
Q  473 gacacggacattgacacgtcgacaccactaataatgtgagaaaatcacataattcag 529  Q
    |||||||||| ||||| ||||||||  |||||||| ||| ||||| |||||||||||    
T  43001780 gacacggacactgacatgtcgacactgctaataatttgaaaaaattacataattcag 43001836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 184 - 226
Target Start/End: Complemental strand, 54188121 - 54188079
Alignment:
Q  184 tcatgaagtgattgataaatcagttcaatttcaatctcacagt 226  Q
    ||||||||||||||||||| |||||||||||||||||||||||    
T  54188121 tcatgaagtgattgataaaacagttcaatttcaatctcacagt 54188079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 472 - 529
Target Start/End: Original strand, 36635303 - 36635360
Alignment:
Q  472 cgacacggacattgacacgtcgacaccactaataatgtgagaaaatcacataattcag 529  Q
    |||| |||||| ||||||| | |||||||||||||| |||||||||||||||||||||    
T  36635303 cgactcggacactgacacgccaacaccactaataatttgagaaaatcacataattcag 36635360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 28 - 128
Target Start/End: Complemental strand, 54188221 - 54188122
Alignment:
Q  28 tgattggctttaacattatcccgtttactacgtgcatggtccaattgcttatctttctttcgaagtttttcattaacattgcaaaagttaacgttccatt 127  Q
    ||||||| ||||| || || || ||||||| |||||||||||||| ||| ||||||||||| |||||||| |  || |||||||| ||||| ||||||||    
T  54188221 tgattggttttaaaatgattccttttactatgtgcatggtccaat-gctcatctttctttccaagttttttacaaatattgcaaatgttaatgttccatt 54188123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 485 - 528
Target Start/End: Complemental strand, 24613768 - 24613725
Alignment:
Q  485 gacacgtcgacaccactaataatgtgagaaaatcacataattca 528  Q
    ||||||||||||| ||||||||| ||||||||||||||||||||    
T  24613768 gacacgtcgacacaactaataatttgagaaaatcacataattca 24613725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 184 - 222
Target Start/End: Original strand, 8571047 - 8571085
Alignment:
Q  184 tcatgaagtgattgataaatcagttcaatttcaatctca 222  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  8571047 tcatgaagtgattgataaaacagttcaatttcaatctca 8571085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 464 - 529
Target Start/End: Original strand, 4383339 - 4383403
Alignment:
Q  464 tgaagcaccgacacggacattgacacgtcgacaccactaataatgtgagaaaatcacataattcag 529  Q
    |||||||| || ||||||| ||||||||||| || ||||||||| ||| |||||||||||||||||    
T  4383339 tgaagcacggatacggacactgacacgtcgatacaactaataatttga-aaaatcacataattcag 4383403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 472 - 529
Target Start/End: Complemental strand, 23293066 - 23293009
Alignment:
Q  472 cgacacggacattgacacgtcgacaccactaataatgtgagaaaatcacataattcag 529  Q
    ||||||||||| ||||||| ||||||  |||||||| ||| |||||||||||||||||    
T  23293066 cgacacggacaatgacacgccgacacagctaataatttgaaaaaatcacataattcag 23293009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 472 - 525
Target Start/End: Original strand, 40742570 - 40742623
Alignment:
Q  472 cgacacggacattgacacgtcgacaccactaataatgtgagaaaatcacataat 525  Q
    ||||||||||||||| ||| |||||||| ||||||| ||||||||||| |||||    
T  40742570 cgacacggacattgaaacgccgacaccattaataatttgagaaaatcatataat 40742623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 473 - 529
Target Start/End: Complemental strand, 40179715 - 40179659
Alignment:
Q  473 gacacggacattgacacgtcgacaccactaataatgtgagaaaatcacataattcag 529  Q
    |||||||||| |||||||| ||||||| ||||| | ||| |||||||||||||||||    
T  40179715 gacacggacactgacacgttgacaccattaatagtttgaaaaaatcacataattcag 40179659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 492 - 529
Target Start/End: Complemental strand, 8423778 - 8423741
Alignment:
Q  492 cgacaccactaataatgtgagaaaatcacataattcag 529  Q
    ||||||| |||||||| |||||||||||||||||||||    
T  8423778 cgacaccgctaataatttgagaaaatcacataattcag 8423741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 476 - 529
Target Start/End: Complemental strand, 11651210 - 11651157
Alignment:
Q  476 acggacattgacacgtcgacaccactaataatgtgagaaaatcacataattcag 529  Q
    ||||||| ||||||||||||||  |||||||| | | |||||||||||||||||    
T  11651210 acggacactgacacgtcgacacagctaataatttaaaaaaatcacataattcag 11651157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 472 - 529
Target Start/End: Complemental strand, 22440680 - 22440623
Alignment:
Q  472 cgacacggacattgacacgtcgacaccactaataatgtgagaaaatcacataattcag 529  Q
    ||||| ||||| ||| || ||||||||  ||||||| |||||||||||||||||||||    
T  22440680 cgacatggacactgatacatcgacaccgttaataatttgagaaaatcacataattcag 22440623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 484 - 529
Target Start/End: Original strand, 40613441 - 40613486
Alignment:
Q  484 tgacacgtcgacaccactaataatgtgagaaaatcacataattcag 529  Q
    ||||||| ||||||| |||||| | |||||||||||||||||||||    
T  40613441 tgacacgccgacaccgctaatattttgagaaaatcacataattcag 40613486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 493 - 525
Target Start/End: Original strand, 1074798 - 1074830
Alignment:
Q  493 gacaccactaataatgtgagaaaatcacataat 525  Q
    ||||||||||||||| |||||||||||||||||    
T  1074798 gacaccactaataatttgagaaaatcacataat 1074830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 473 - 529
Target Start/End: Original strand, 7012046 - 7012102
Alignment:
Q  473 gacacggacattgacacgtcgacaccactaataatgtgagaaaatcacataattcag 529  Q
    ||||||||||  |||||| |||||||  ||||||| ||||||||| |||||||||||    
T  7012046 gacacggacaccgacacgccgacaccgataataatttgagaaaatgacataattcag 7012102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 494 - 526
Target Start/End: Complemental strand, 7214580 - 7214548
Alignment:
Q  494 acaccactaataatgtgagaaaatcacataatt 526  Q
    |||||||||||||| ||||||||||||||||||    
T  7214580 acaccactaataatttgagaaaatcacataatt 7214548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 28 - 128
Target Start/End: Original strand, 8570947 - 8571046
Alignment:
Q  28 tgattggctttaacattatcccgtttactacgtgcatggtccaattgcttatctttctttcgaagtttttcattaacattgcaaaagttaacgttccatt 127  Q
    ||||||| ||||| || || || ||||||| ||||||||||||| |||| ||||||||||| ||||| ||    || |||||||| ||||| ||||||||    
T  8570947 tgattggttttaaaatgattccttttactatgtgcatggtccaa-tgctcatctttctttccaagttatttgcaaatattgcaaatgttaatgttccatt 8571045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 472 - 528
Target Start/End: Complemental strand, 20521929 - 20521873
Alignment:
Q  472 cgacacggacattgacacgtcgacaccactaataatgtgagaaaatcacataattca 528  Q
    ||||||||||| ||||||| ||| |||  ||||||| ||| ||||||||||||||||    
T  20521929 cgacacggacactgacacgccgataccgataataatttgataaaatcacataattca 20521873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 494 - 526
Target Start/End: Complemental strand, 21658872 - 21658840
Alignment:
Q  494 acaccactaataatgtgagaaaatcacataatt 526  Q
    |||||||||||||| ||||||||||||||||||    
T  21658872 acaccactaataatttgagaaaatcacataatt 21658840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 477 - 529
Target Start/End: Complemental strand, 38148800 - 38148748
Alignment:
Q  477 cggacattgacacgtcgacaccactaataatgtgagaaaatcacataattcag 529  Q
    |||||| |||||  |||||||| |||||| | |||||||||||||||||||||    
T  38148800 cggacaatgacatttcgacaccgctaatagtttgagaaaatcacataattcag 38148748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 464 - 529
Target Start/End: Original strand, 92778 - 92843
Alignment:
Q  464 tgaagcaccgacacggacattgacacgtcgacaccactaataatgtgagaaaatcacataattcag 529  Q
    |||||||| || ||||||| ||||||| ||||||| |||||||| ||||||||| |||||||||||    
T  92778 tgaagcacggatacggacactgacacgccgacaccgctaataatttgagaaaattacataattcag 92843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 472 - 529
Target Start/End: Original strand, 29776015 - 29776072
Alignment:
Q  472 cgacacggacattgacacgtcgacaccactaataatgtgagaaaatcacataattcag 529  Q
    ||||||||||||||||| ||||||||  |||||||| |||||||||||| ||||||||    
T  29776015 cgacacggacattgacaagtcgacactgctaataatttgagaaaatcacgtaattcag 29776072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 476 - 529
Target Start/End: Original strand, 34897068 - 34897121
Alignment:
Q  476 acggacattgacacgtcgacaccactaataatgtgagaaaatcacataattcag 529  Q
    |||||||  |||||||||||||| |||||||| |||||||||||||||||||||    
T  34897068 acggacacagacacgtcgacaccgctaataatttgagaaaatcacataattcag 34897121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 485 - 528
Target Start/End: Complemental strand, 29447177 - 29447134
Alignment:
Q  485 gacacgtcgacaccactaataatgtgagaaaatcacataattca 528  Q
    ||||||||||||| ||||||||| ||||||||||||||||||||    
T  29447177 gacacgtcgacacaactaataatttgagaaaatcacataattca 29447134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 485 - 529
Target Start/End: Original strand, 14134691 - 14134735
Alignment:
Q  485 gacacgtcgacaccactaataatgtgagaaaatcacataattcag 529  Q
    ||||||||||||  ||||||||| |||||||||||||||||||||    
T  14134691 gacacgtcgacaatactaataatttgagaaaatcacataattcag 14134735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 472 - 528
Target Start/End: Original strand, 22651955 - 22652011
Alignment:
Q  472 cgacacggacattgacacgtcgacaccactaataatgtgagaaaatcacataattca 528  Q
    ||||||||||| ||||||| ||||||  |||||||| ||| ||||||||||||||||    
T  22651955 cgacacggacactgacacgccgacacagctaataatttgaaaaaatcacataattca 22652011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 478 - 526
Target Start/End: Original strand, 27101500 - 27101548
Alignment:
Q  478 ggacattgacacgtcgacaccactaataatgtgagaaaatcacataatt 526  Q
    ||||||||||||| ||||||| |||||||| ||| ||||||||||||||    
T  27101500 ggacattgacacgccgacaccgctaataatttgaaaaaatcacataatt 27101548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 472 - 528
Target Start/End: Original strand, 36934649 - 36934705
Alignment:
Q  472 cgacacggacattgacacgtcgacaccactaataatgtgagaaaatcacataattca 528  Q
    ||||||||||| | ||||||||||||| ||||||||  || ||||||||||||||||    
T  36934649 cgacacggacactaacacgtcgacaccgctaataattcgaaaaaatcacataattca 36934705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 474 - 529
Target Start/End: Original strand, 7658444 - 7658499
Alignment:
Q  474 acacggacattgacacgtcgacaccactaataatgtgagaaaatcacataattcag 529  Q
    |||| ||||| || ||| |||||||||||||||| ||||||||| |||||||||||    
T  7658444 acacagacatcgatacgccgacaccactaataatttgagaaaattacataattcag 7658499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 479 - 529
Target Start/End: Complemental strand, 4786411 - 4786361
Alignment:
Q  479 gacattgacacgtcgacaccactaataatgtgagaaaatcacataattcag 529  Q
    |||| ||||||| |||||||| ||||||| | |||||||||||||||||||    
T  4786411 gacactgacacgccgacaccattaataatttaagaaaatcacataattcag 4786361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 476 - 526
Target Start/End: Complemental strand, 15816205 - 15816155
Alignment:
Q  476 acggacattgacacgtcgacaccactaataatgtgagaaaatcacataatt 526  Q
    ||||||| ||||||| |||||| ||||||||| ||| ||||||||||||||    
T  15816205 acggacactgacacgccgacacaactaataatttgaaaaaatcacataatt 15816155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 479 - 529
Target Start/End: Complemental strand, 20679468 - 20679418
Alignment:
Q  479 gacattgacacgtcgacaccactaataatgtgagaaaatcacataattcag 529  Q
    |||| ||||| ||||||||| |||||||| ||||||||||||||| |||||    
T  20679468 gacactgacatgtcgacacccctaataatttgagaaaatcacatagttcag 20679418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 472 - 529
Target Start/End: Complemental strand, 24362282 - 24362225
Alignment:
Q  472 cgacacggacattgacacgtcgacaccactaataatgtgagaaaatcacataattcag 529  Q
    |||||| ||||  |||||| ||||||| |||||||| ||||| |||||||||||||||    
T  24362282 cgacacagacaccgacacgccgacaccgctaataatttgagagaatcacataattcag 24362225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 472 - 529
Target Start/End: Complemental strand, 29510384 - 29510327
Alignment:
Q  472 cgacacggacattgacacgtcgacaccactaataatgtgagaaaatcacataattcag 529  Q
    ||||||||||| ||||||| ||||||  |||||||| ||| ||||||||| |||||||    
T  29510384 cgacacggacactgacacgccgacacagctaataatttgaaaaaatcacaaaattcag 29510327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 485 - 526
Target Start/End: Complemental strand, 39954346 - 39954305
Alignment:
Q  485 gacacgtcgacaccactaataatgtgagaaaatcacataatt 526  Q
    |||||| ||||||| |||||||| ||||||||||||||||||    
T  39954346 gacacgccgacaccgctaataatttgagaaaatcacataatt 39954305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 476 - 529
Target Start/End: Complemental strand, 41838199 - 41838146
Alignment:
Q  476 acggacattgacacgtcgacaccactaataatgtgagaaaatcacataattcag 529  Q
    ||||||| ||||||||||||||  |||||||| | | |||||||||||||||||    
T  41838199 acggacactgacacgtcgacacagctaataatttaaaaaaatcacataattcag 41838146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 493 - 529
Target Start/End: Complemental strand, 18067993 - 18067957
Alignment:
Q  493 gacaccactaataatgtgagaaaatcacataattcag 529  Q
    |||||| |||||||| |||||||||||||||||||||    
T  18067993 gacaccgctaataatttgagaaaatcacataattcag 18067957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 473 - 529
Target Start/End: Complemental strand, 31109597 - 31109541
Alignment:
Q  473 gacacggacattgacacgtcgacaccactaataatgtgagaaaatcacataattcag 529  Q
    |||||||||| ||||||| |||||||  ||||||| ||||||||||| | |||||||    
T  31109597 gacacggacactgacacgccgacaccgttaataatttgagaaaatcaaacaattcag 31109541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 473 - 529
Target Start/End: Complemental strand, 37283889 - 37283833
Alignment:
Q  473 gacacggacattgacacgtcgacaccactaataatgtgagaaaatcacataattcag 529  Q
    |||||||||| ||||| |  | |||| |||||||| |||||||||||||||||||||    
T  37283889 gacacggacactgacatgcgggcaccgctaataatctgagaaaatcacataattcag 37283833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 472 - 529
Target Start/End: Original strand, 2331773 - 2331830
Alignment:
Q  472 cgacacggacattgacacgtcgacaccactaataatgtgagaaaatcacataattcag 529  Q
    |||||||||||||||||||   |||||| ||||||| |||||||||||||||||||||    
T  2331773 cgacacggacattgacacgcaaacaccattaataatttgagaaaatcacataattcag 2331830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 472 - 529
Target Start/End: Original strand, 21616741 - 21616798
Alignment:
Q  472 cgacacggacattgacacgtcgacaccactaataatgtgagaaaatcacataattcag 529  Q
    |||||||||||  |||||| ||||||| |||||||| |||||||||||||||||||||    
T  21616741 cgacacggacacggacacgccgacaccgctaataatttgagaaaatcacataattcag 21616798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 472 - 529
Target Start/End: Complemental strand, 12941015 - 12940958
Alignment:
Q  472 cgacacggacattgacacgtcgacaccactaataatgtgagaaaatcacataattcag 529  Q
    ||||||||||| |||||||| ||||| ||||||||| ||| ||||||| |||||||||    
T  12941015 cgacacggacactgacacgttgacacaactaataatttgaaaaaatcatataattcag 12940958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 479 - 527
Target Start/End: Original strand, 11670741 - 11670789
Alignment:
Q  479 gacattgacacgtcgacaccactaataatgtgagaaaatcacataattc 527  Q
    |||| |||||||||||| ||||||||||| ||| |||||||||||||||    
T  11670741 gacactgacacgtcgacgccactaataatttgaaaaaatcacataattc 11670789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 473 - 529
Target Start/End: Original strand, 23718006 - 23718062
Alignment:
Q  473 gacacggacattgacacgtcgacaccactaataatgtgagaaaatcacataattcag 529  Q
    |||||||||| ||||||  ||||||| |||||||| ||||||| |||||||||||||    
T  23718006 gacacggacactgacacaccgacaccgctaataatttgagaaagtcacataattcag 23718062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 473 - 529
Target Start/End: Original strand, 24105678 - 24105734
Alignment:
Q  473 gacacggacattgacacgtcgacaccactaataatgtgagaaaatcacataattcag 529  Q
    |||||||||| ||||||  ||||||| |||||||| ||||||| |||||||||||||    
T  24105678 gacacggacactgacacaccgacaccgctaataatttgagaaagtcacataattcag 24105734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 473 - 529
Target Start/End: Original strand, 39323244 - 39323300
Alignment:
Q  473 gacacggacattgacacgtcgacaccactaataatgtgagaaaatcacataattcag 529  Q
    |||||||||| ||| ||||||||||| |||||||| ||| ||||| |||||||||||    
T  39323244 gacacggacactgaaacgtcgacaccgctaataatttgacaaaattacataattcag 39323300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 472 - 529
Target Start/End: Complemental strand, 19536478 - 19536420
Alignment:
Q  472 cgacacggacattgacacgtcgacaccactaataatgtg-agaaaatcacataattcag 529  Q
    ||||||||||| ||||||| |||||| ||||||||| || | |||||||||||||||||    
T  19536478 cgacacggacaatgacacgccgacacaactaataatttgaaaaaaatcacataattcag 19536420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 472 - 526
Target Start/End: Complemental strand, 20539754 - 20539700
Alignment:
Q  472 cgacacggacattgacacgtcgacaccactaataatgtgagaaaatcacataatt 526  Q
    ||||||||||| ||||||||||||||  |||||||| ||| ||||||| ||||||    
T  20539754 cgacacggacactgacacgtcgacacagctaataatttgaaaaaatcatataatt 20539700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 484 - 529
Target Start/End: Complemental strand, 21782886 - 21782841
Alignment:
Q  484 tgacacgtcgacaccactaataatgtgagaaaatcacataattcag 529  Q
    ||||||| ||||||  |||||||| |||||||||||||||||||||    
T  21782886 tgacacgccgacactgctaataatttgagaaaatcacataattcag 21782841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 472 - 529
Target Start/End: Original strand, 28412329 - 28412386
Alignment:
Q  472 cgacacggacattgacacgtcgacaccactaataatgtgagaaaatcacataattcag 529  Q
    ||||||||||| | ||||||| |||||  ||||||| ||| |||||||||||||||||    
T  28412329 cgacacggacactaacacgtcaacaccgttaataatttgataaaatcacataattcag 28412386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 472 - 529
Target Start/End: Complemental strand, 36756424 - 36756367
Alignment:
Q  472 cgacacggacattgacacgtcgacaccactaataatgtgagaaaatcacataattcag 529  Q
    |||||| |||| |||||||||||||| ||||||||| |||  |||| |||||||||||    
T  36756424 cgacacagacactgacacgtcgacacaactaataatttgaagaaataacataattcag 36756367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 492 - 529
Target Start/End: Complemental strand, 37411304 - 37411267
Alignment:
Q  492 cgacaccactaataatgtgagaaaatcacataattcag 529  Q
    ||||||| |||||||| |||||||||||||||||||||    
T  37411304 cgacaccgctaataatttgagaaaatcacataattcag 37411267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 473 - 529
Target Start/End: Complemental strand, 30404929 - 30404873
Alignment:
Q  473 gacacggacattgacacgtcgacaccactaataatgtgagaaaatcacataattcag 529  Q
    |||||||||| ||||||| ||||||   ||||||| ||| |||||||||||||||||    
T  30404929 gacacggacactgacacgccgacacggttaataatttgaaaaaatcacataattcag 30404873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0223 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 472 - 529
Target Start/End: Original strand, 20151 - 20208
Alignment:
Q  472 cgacacggacattgacacgtcgacaccactaataatgtgagaaaatcacataattcag 529  Q
    ||||||||||| ||||||| ||||||  |||||||| ||| |||||||||||||||||    
T  20151 cgacacggacaatgacacgccgacacagctaataatttgaaaaaatcacataattcag 20208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 473 - 529
Target Start/End: Original strand, 51791 - 51847
Alignment:
Q  473 gacacggacattgacacgtcgacaccactaataatgtgagaaaatcacataattcag 529  Q
    |||||||||| ||||||| ||||||  |||||||| ||| |||||||||||||||||    
T  51791 gacacggacactgacacgccgacacagctaataatttgaaaaaatcacataattcag 51847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 472 - 529
Target Start/End: Original strand, 63751 - 63809
Alignment:
Q  472 cgacacggacattgacacgtcga-caccactaataatgtgagaaaatcacataattcag 529  Q
    ||||||||||| ||||||||| | |||| |||||||| ||||||||| |||||||||||    
T  63751 cgacacggacaatgacacgtctaacaccgctaataatttgagaaaattacataattcag 63809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 472 - 529
Target Start/End: Complemental strand, 178899 - 178841
Alignment:
Q  472 cgacacggacattgacacgtcgacaccactaataatgtgagaaaatca-cataattcag 529  Q
    ||||||||||| ||||||| |||||| ||||||||| ||| ||||||| ||||||||||    
T  178899 cgacacggacactgacacgccgacacaactaataatttgaaaaaatcatcataattcag 178841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 472 - 529
Target Start/End: Original strand, 46661 - 46718
Alignment:
Q  472 cgacacggacattgacacgtcgacaccactaataatgtgagaaaatcacataattcag 529  Q
    ||||||||||| ||||||| ||||||   ||||||| ||| |||||||||||||||||    
T  46661 cgacacggacaatgacacgccgacacagttaataatttgaaaaaatcacataattcag 46718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 472 - 529
Target Start/End: Complemental strand, 263452 - 263395
Alignment:
Q  472 cgacacggacattgacacgtcgacaccactaataatgtgagaaaatcacataattcag 529  Q
    ||||||||||| ||||| ||| ||||  |||||||| |||||||| ||||||||||||    
T  263452 cgacacggacactgacatgtcaacactgctaataatttgagaaaaccacataattcag 263395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0361 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 485 - 529
Target Start/End: Original strand, 14522 - 14566
Alignment:
Q  485 gacacgtcgacaccactaataatgtgagaaaatcacataattcag 529  Q
    |||||| |||||| ||||||||| ||| |||||||||||||||||    
T  14522 gacacgccgacacaactaataatttgaaaaaatcacataattcag 14566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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