View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14042_low_42 (Length: 210)
Name: NF14042_low_42
Description: NF14042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14042_low_42 |
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Alignment Details
Target: chr4 (Bit Score: 174; Significance: 8e-94; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 14 - 195
Target Start/End: Complemental strand, 33658213 - 33658032
Alignment:
| Q |
14 |
gagaagaacccgatcacaattaataaaagagaaatgctaataagtatcattagggtactcgttagcgacccttagtaaaataacctttttcaattcatgg |
113 |
Q |
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| T |
33658213 |
gagaagaacccgatcacaatttataaaagagaaatgctaataagtgtcattagggtactcgttagcgacccttagtaaaataacctttttcaattcatgg |
33658114 |
T |
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| Q |
114 |
aaagcattaataacttgtccggtagaaacccaagaatccaaggaggaaataacttgggtttctatataagggatcaatttct |
195 |
Q |
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| T |
33658113 |
aaagcattaataacttgtccggtagaaacccaagaatccaaggaggaaataacttgggtttctatataagggatcaatttct |
33658032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 95 - 195
Target Start/End: Complemental strand, 33698667 - 33698567
Alignment:
| Q |
95 |
aacctttttcaattcatggaaagcattaataacttgtccggtagaaacccaagaatccaaggaggaaataacttgggtttctatataagggatcaatttc |
194 |
Q |
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| T |
33698667 |
aacctttttcatttcatggaaagcgttgatgacttgtccaatagaaacccaggattctaatgaggaaatgacttcattttcaatatcagggatcaatttc |
33698568 |
T |
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| Q |
195 |
t |
195 |
Q |
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| T |
33698567 |
t |
33698567 |
T |
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