View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14042_low_5 (Length: 563)
Name: NF14042_low_5
Description: NF14042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14042_low_5 |
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| [»] chr6 (3 HSPs) |
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| [»] scaffold0743 (1 HSPs) |
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| [»] scaffold0013 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 511; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 511; E-Value: 0
Query Start/End: Original strand, 9 - 563
Target Start/End: Original strand, 10006138 - 10006691
Alignment:
| Q |
9 |
agcagagatcgaactctaacctccttattaaccttcttgaacttacattttatgaatttcggaaatagactttgaaagtctatatttgtttttaaaaata |
108 |
Q |
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| T |
10006138 |
agcagagatcgaactctaacctccttattaaccttcttgaacttacattttatgaatttcggaaatagactttgaa-gtctatatttgtttttaaaaata |
10006236 |
T |
|
| Q |
109 |
taatgccaaaagatattacagtttttgttctaagaaataaatctttggaggcaagtatgagttatgatgcttagattgtgttcttaccggatttggtgat |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
10006237 |
taatgccaaaagatattacagtttttgttctaagaaataaatctttggaggcaagtatgagttatgatgcttagattgtgttcttcccggatttggtgat |
10006336 |
T |
|
| Q |
209 |
acctagaagacgatgaaccgttggaggagagattgtgatcttgatggtgtttgactggagctctccgaggaacgaaggggggttgtgtacctgcacatgc |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
10006337 |
acctagaagacgatgaaccgttggaggagagattgtgatcttgatggtgtttgactggagctctccgaggaacgaaggggtgttgtgtacctgcacatgc |
10006436 |
T |
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| Q |
309 |
ttagacgttcaaggcagtatgtgaatgagagaagtgacgctgggtttagaaaagagatatcttgtgaggtcttggtgttcgccttatataggccaaggag |
408 |
Q |
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||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
10006437 |
ttagacgttcaaggcagtatgtgaatgagagaagtgatgctaggtttagaaaagagataccttgtgaggtcttggtgttcgccttatataggccaaggag |
10006536 |
T |
|
| Q |
409 |
atagtagttaagccttattgggtcttttaccttgtgtagttggtccatgtccctcaagggacacatgtaagttgattagagaaagtcatcattggatcca |
508 |
Q |
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| T |
10006537 |
atagtagttaagccttattgggtcttttaccttgtgtagttggtccatgtccctcaagagacacatgtaagttgatcagaggaagtcatcattggatcca |
10006636 |
T |
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| Q |
509 |
ttatgaacggtctagatccttatgatgggtcattattctagtgcggaggattggt |
563 |
Q |
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| T |
10006637 |
tcatgaacggtctagatccttatgatgggtcattattctagtgcggaggattggt |
10006691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 36 - 202
Target Start/End: Original strand, 10000056 - 10000225
Alignment:
| Q |
36 |
ttaaccttcttgaacttacattttatgaatttcggaaatagactttgaaagtctatatttgtttttaaaaata---taatgccaaaagatattacagttt |
132 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | ||||||||||||||| | ||||| |
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| T |
10000056 |
ttaaccttcttgaacttacattttatgaatttcggaaagagactttgaaagtctatatttgtttttaaaaaaaaaataatgccaaaagataatgtagttt |
10000155 |
T |
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| Q |
133 |
ttgttctaagaaataaatctttggaggcaagtatgagttatgatgcttagattgtgttcttaccggattt |
202 |
Q |
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| T |
10000156 |
ttgttttaagaaataaatcttaggaggcaagtatgagttatgatgcttagattgtgatcttaccggattt |
10000225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 78 - 247
Target Start/End: Original strand, 9993223 - 9993392
Alignment:
| Q |
78 |
ctttgaaagtctatatttgtttttaaaaatataatgccaaaagatattacagtttttgttctaagaaataaatctttggaggcaagtatgagttatgatg |
177 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| |||||||| |||| |||||||||||| ||||| |
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| T |
9993223 |
ctttgaaagtctatatttgtttttaaaaatataattccaaaagatattacagtttttgttttaagaattaaatcttaggagacaagtatgagttgtgatg |
9993322 |
T |
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| Q |
178 |
cttagattgtgttcttaccggatttggtgatacctagaagacgatgaaccgttggaggagagattgtgat |
247 |
Q |
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| T |
9993323 |
cttagattgtgatcttaatggatttggcaagacctataagacaacgaaccgttggaggagagatggtgat |
9993392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 369 - 529
Target Start/End: Complemental strand, 30859590 - 30859443
Alignment:
| Q |
369 |
cttgtgaggtcttggtgttcgccttatataggccaaggagatagtagttaagccttattgggtcttttaccttgtgtagttggtccatgtccctcaaggg |
468 |
Q |
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||||| |||||||| |||| |||||||||||||||| ||||||| ||||| |||||| |||||||| |||| |||||||| ||| || | |
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| T |
30859590 |
cttgtaaggtcttgatgttagccttatataggccaatgagatagcagttaggcctta-----------accttgtg--gttgatccatgtcactctagag |
30859504 |
T |
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| Q |
469 |
acacatgtaagttgattagagaaagtcatcattggatccattatgaacggtctagatcctt |
529 |
Q |
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| T |
30859503 |
acacatgtaaataaataagaggaagttatcattggatccatcatgaacggtctagatcctt |
30859443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0743 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0743
Description:
Target: scaffold0743; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 354 - 404
Target Start/End: Complemental strand, 3794 - 3744
Alignment:
| Q |
354 |
ttagaaaagagatatcttgtgaggtcttggtgttcgccttatataggccaa |
404 |
Q |
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|||||| ||||||| |||||||||||||| |||| || ||||||||||||| |
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| T |
3794 |
ttagaagagagataccttgtgaggtcttgctgttagctttatataggccaa |
3744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 370 - 416
Target Start/End: Complemental strand, 87055 - 87009
Alignment:
| Q |
370 |
ttgtgaggtcttggtgttcgccttatataggccaaggagatagtagt |
416 |
Q |
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| T |
87055 |
ttgtgaggtcttaaagtttgccttatataggccaaggagatagtagt |
87009 |
T |
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