View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14042_low_7 (Length: 503)
Name: NF14042_low_7
Description: NF14042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14042_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 148 - 423
Target Start/End: Complemental strand, 25927818 - 25927545
Alignment:
| Q |
148 |
gaccaccacacaataagcaacctcttaattgaaatgagaatattaacatttcattgatgctaagattttatgctctctcaacttgttgtactctttaccg |
247 |
Q |
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| T |
25927818 |
gaccaccacacaataagcaacctcttaatcgaaatga--atattcacatttcattgatgctaagattttatgctctgtcaacttgttgtactctttacat |
25927721 |
T |
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| Q |
248 |
gaccttctctttcacatattatttttagccattttctacattatttgattttgaaataacaatataaatcataacttctctactgcatctcgaacccatg |
347 |
Q |
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| T |
25927720 |
gaccttctctttcacatattattttttgccattttctacattatctgattttgaaataataacataaatcataacttctctactacatctcgaacccatg |
25927621 |
T |
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| Q |
348 |
acaacaactcatctcacgaagaattttctttcaaggcctttcgtacaaagggtctacatagaccttaatatcaata |
423 |
Q |
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| T |
25927620 |
agaacaactcatctcatgaagaattttctttcaaggcctttcatacaaagggtctacagagaccttaatatcaata |
25927545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 25 - 116
Target Start/End: Complemental strand, 25927913 - 25927822
Alignment:
| Q |
25 |
gaagttgccatttcacgagcaaacctttgttcttctagttttagatgttgtgcatatttatgaccttagaagaattgagtcagctcatgatt |
116 |
Q |
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| T |
25927913 |
gaagttgccatttcacgagcaaacatcttttcttctggttttagatgttgtgcatatttatgaccttagaagaattgagtcagctcatgatt |
25927822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 427 - 483
Target Start/End: Complemental strand, 25927199 - 25927143
Alignment:
| Q |
427 |
taggggttagtatgattcgtcaaatgagattgttccacatcaacttttattttagat |
483 |
Q |
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| T |
25927199 |
taggtgttagtatgattcgtcaaatgagattgttccacatcaacttttatttcagat |
25927143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 286 - 368
Target Start/End: Complemental strand, 5720396 - 5720313
Alignment:
| Q |
286 |
cattatttgattttgaaataacaatataaa-tcataacttctctactgcatctcgaacccatgacaacaactcatctcacgaag |
368 |
Q |
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||||||| ||||||||||| |||||| ||| || |||||||| | || ||||||||||| ||| ||||||||| ||||| |||| |
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| T |
5720396 |
cattattcgattttgaaatgacaatagaaaatcctaacttcttttcttcatctcgaacctatgtcaacaactcctctcatgaag |
5720313 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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