View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14042_low_8 (Length: 502)
Name: NF14042_low_8
Description: NF14042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14042_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 431; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 22 - 488
Target Start/End: Complemental strand, 48714419 - 48713953
Alignment:
| Q |
22 |
taatcatcatcataccttaaaattggggctttatatcctacaaaacaaattaagcatgtgaagacaaaaactgttaaacatgtgtagatgcattcaatat |
121 |
Q |
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| T |
48714419 |
taattatcatcataccttaaaattggggctttatatcctacaaaacaaattaagcatgtgaagacaaaaactgttaaacatgtgtagatgcattcaatat |
48714320 |
T |
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| Q |
122 |
atgaaaccatgacctcctcaaaataatcagtcatagataagaaggaaaggcaatagaacagtaccaaaaacgtcggagacgaggagaatgacgaaggtgc |
221 |
Q |
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| T |
48714319 |
atgaaaccatgacctcctcaaaataatcagccatagataagaaggaaaggcaatagaacagtaccaaaaatgtcggagacgaggagaatgacgaaggtgc |
48714220 |
T |
|
| Q |
222 |
aaagaggagaaccagtgagataagcatcaacaccaccaagtttagcaacatggccagcaccactgaaggagttcagaattggtgggtttgagcagcatgc |
321 |
Q |
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| T |
48714219 |
aaagaggagaaccagtgagataagcatcaacaccaccaagtttagcaacatggccagcaccactgaaagagttcagaattggtgggtttgagcagcatgc |
48714120 |
T |
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| Q |
322 |
cggacctaacatttttgtttgtttgaccttttaattttacttccctccaaaatactcaacactcgtatttctatttataactagattagatgtatgtgta |
421 |
Q |
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| T |
48714119 |
cggacctaacatttttgtttgtttgaccttttaattttacttccctccaaaatacttaacactcacatttctatttataactagattagatgtatgtgta |
48714020 |
T |
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| Q |
422 |
ggacccactacatgtgggtaaaatccagccaaagaaatttgcttctcacaaattgaatgctgcttgt |
488 |
Q |
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| T |
48714019 |
ggacccactacatgcgggtaaaatccagccaaagaaatttgcttctaacaaattgaatgctgcttgt |
48713953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 217 - 415
Target Start/End: Complemental strand, 48695958 - 48695754
Alignment:
| Q |
217 |
ggtgcaaagaggagaaccagtgagataagcatcaacaccaccaagtttagcaacatggccagcaccactgaaggagttcagaattggtgggtttgagcag |
316 |
Q |
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| T |
48695958 |
ggtggaaagaggagagccagtgaggtaagcatcaagaccaccaattttttcaacatggccagctccactaaaggggttcagaattggtgggttagagcag |
48695859 |
T |
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| Q |
317 |
catgccggacctaacatttttgtttgtttgaccttt--------taattttacttccctccaaaatactcaacactcgtatttctatttataactagatt |
408 |
Q |
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| T |
48695858 |
catgcatgacctgacatttttgtttctttgactttttgttttgctaactgcacttccctcc--aatactcaacactcccatttctatttataactagact |
48695761 |
T |
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| Q |
409 |
agatgta |
415 |
Q |
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||||||| |
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| T |
48695760 |
agatgta |
48695754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 21 - 84
Target Start/End: Complemental strand, 47165754 - 47165691
Alignment:
| Q |
21 |
gtaatcatcatcataccttaaaattggggctttatatcctacaaaacaaattaagcatgtgaag |
84 |
Q |
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| T |
47165754 |
gtaatcatcatcataccttaaaattggggctttatatcctacaaaacaaattaagcaagtgaag |
47165691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 85 - 146
Target Start/End: Complemental strand, 47165666 - 47165602
Alignment:
| Q |
85 |
acaaaaactgttaaacatgtg---tagatgcattcaatatatgaaaccatgacctcctcaaaata |
146 |
Q |
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| T |
47165666 |
acaaaaactgttcaacatgtgatgtagatgcattcaatatatgaaaccatgacatactcaaaata |
47165602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 30 - 84
Target Start/End: Complemental strand, 48696137 - 48696083
Alignment:
| Q |
30 |
atcataccttaaaattggggctttatatcctacaaaacaaattaagcatgtgaag |
84 |
Q |
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| T |
48696137 |
atcataccttataattggagattcatatcctacaaaacaaataaagcatgtgaag |
48696083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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