View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14043_low_1 (Length: 477)
Name: NF14043_low_1
Description: NF14043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14043_low_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 419; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 12 - 461
Target Start/End: Original strand, 4167695 - 4168151
Alignment:
| Q |
12 |
atgaacgtgaacataaaagatttctcaattattaacttgttg-------gaagccaattccatgtctctctgtaggaaatgtaacgaaaagcatgctgca |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4167695 |
atgaacgtgaacataaaagatttctcaattattaacttgttgaaagggggaagccaattccatgtctctctgtaggaaatgtaacgaaaagcatgctgca |
4167794 |
T |
|
| Q |
105 |
aaaaacgccaattgccacaggcaacgccgtgaggatttcttgtatctcttttgatggttctggaaaaaagcaattcaccacattcagatcaaacaatgca |
204 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
4167795 |
aaaatcgccaattgccacaggcaacgccgtgaggatttcttgtatctcttttgatggttctggaaaaaagcaattcaccacattccgatcaaacaatgca |
4167894 |
T |
|
| Q |
205 |
attgctgcaaacaccagaattgacattactgcatgcataaaatctataaaccgtatgcggtatttagcagcaacttgaggtggaagtttggttgatccat |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4167895 |
attgctgcaaacaccagaattgacattactgcatgcataaaatctataaaccgtatgcggtatttagcagcaacttgaggtggaagtttggttgatccat |
4167994 |
T |
|
| Q |
305 |
caataacccacaagcccttaaaggtggaaaacccataaataatattacccttgctgtctctaaagctatcagtaaagcttagcagaaagcatgatgcacc |
404 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4167995 |
caataacccacaagcccttaaaggtggcaaacccataaataatattacccttgctgtctctaaagctatcagtaaagcttagcagaaagcatgatgcacc |
4168094 |
T |
|
| Q |
405 |
acagagagtcacaagtgcagcagtcatccacttgctgacagagtcacagctgccaat |
461 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4168095 |
acagagagtcacaagtgcagcagtcatccacttgctgacagagtcacagctgccaat |
4168151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 21 - 460
Target Start/End: Original strand, 4178631 - 4179077
Alignment:
| Q |
21 |
aacataaaagatttctcaattattaacttgttggaag-------ccaattccatgtctctctgtaggaaatgtaacgaaaagcatgctgcaaaaaacgcc |
113 |
Q |
| |
|
||||||||| | |||||||||||||||||||| ||| ||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
4178631 |
aacataaaaaagatctcaattattaacttgttgaaagggggaacccaattccatgtctctcagtaggaaatgcaacgaaaagcatgctgcaaaaaacgcc |
4178730 |
T |
|
| Q |
114 |
aattgccacaggcaacgccgtgaggatttcttgtatctcttttgatggttctggaaaaaagcaattcaccacattcagatcaaacaatgcaattgctgca |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
4178731 |
aattgccacaggcaacgccgtgaggatttcttgtatctcttttgatggttctggaaaaaagcaattcaccacattctgatcaaacaatgcaattgctgca |
4178830 |
T |
|
| Q |
214 |
aacaccagaattgacattactgcatgcataaaatctataaaccgtatgcggtatttagcagcaacttgaggtggaagtttggttgatccatcaataaccc |
313 |
Q |
| |
|
||||||||||||||||| | |||||||| |||||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4178831 |
aacaccagaattgacatcatcgcatgcatgaaatctataaactttatgcgatattttgcagcaacttgaggtggaagtttggttgatccatcaataaccc |
4178930 |
T |
|
| Q |
314 |
acaagcccttaaaggtggaaaacccataaataatattacccttgctgtctctaaagctatcagtaaagcttagcagaaagcatgatgcaccacagagagt |
413 |
Q |
| |
|
|||||||||| ||||||| |||||||||| |||||| |||||||||||||| | |||||| |||||| ||||||| ||||||||||||||||| ||||| |
|
|
| T |
4178931 |
acaagcccttgaaggtggcaaacccataacaaatattccccttgctgtctcttatgctatctgtaaagtttagcaggaagcatgatgcaccacatagagt |
4179030 |
T |
|
| Q |
414 |
cacaagtgcagcagtcatccacttgctgacagagtcacagctgccaa |
460 |
Q |
| |
|
||||||| ||| |||||| |||||| ||||||||||||| |||||| |
|
|
| T |
4179031 |
cacaagtacagaagtcatggacttgcagacagagtcacagttgccaa |
4179077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 59; Significance: 8e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 53 - 407
Target Start/End: Complemental strand, 34944727 - 34944373
Alignment:
| Q |
53 |
ggaagccaattccatgtctctctgtaggaaatgtaacgaaaagcatgctgcaaaaaacgccaattgccacaggcaacgccgtgaggatttcttgtatctc |
152 |
Q |
| |
|
||||||||||||||||||| | |||||||||| ||| || |||||||| || ||||| |||||| | |||||||| || || ||||||| | ||||| |
|
|
| T |
34944727 |
ggaagccaattccatgtctatgagtaggaaatgcaacaaacagcatgctacagaaaacaccaattccaacaggcaatgcagtaaggatttgacgcatctc |
34944628 |
T |
|
| Q |
153 |
ttttgatggttctggaaaaaagcaattcaccacattcagatcaaacaatgcaattgctgcaaacaccagaattgacattactgcatgcataaaatctata |
252 |
Q |
| |
|
| ||| ||| |||||| || || || |||||||| ||||||||| |||||| |||| ||| |||| ||||||||| | ||||||||| ||||| || |
|
|
| T |
34944627 |
atatgaaggtgatggaaagaaacagttaaccacattatgatcaaacattgcaatagctgaaaaaaccaaaattgacataattgcatgcatgaaatcaatg |
34944528 |
T |
|
| Q |
253 |
aaccgtatgcggtatttagcagcaacttgaggtggaagtttggttgatccatcaataacccacaagcccttaaaggtggaaaacccataaataatattac |
352 |
Q |
| |
|
|||| || | ||||| ||| ||| || | |||||||| | | |||||||||||| | ||| ||||| ||||| |||| ||| |||||| || || | |
|
|
| T |
34944527 |
aaccttagttgatattttgcatcaagttcatgtggaagtgtagctgatccatcaatgatccataagcctttaaatgtggcaaatccataacatatgttcc |
34944428 |
T |
|
| Q |
353 |
ccttgctgtctctaaagctatcagtaaagcttagcagaaagcatgatgcaccaca |
407 |
Q |
| |
|
| || ||||| | ||||||||||| |||| ||| || |||||||| |||||||| |
|
|
| T |
34944427 |
ctttattgtctttgaagctatcagtgaagcatagtaggaagcatgaggcaccaca |
34944373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University