View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14043_low_3 (Length: 273)
Name: NF14043_low_3
Description: NF14043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14043_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 24358648 - 24358393
Alignment:
| Q |
1 |
aaaccaaaccaa-cctcgaactttcttatgtggtcgaggagaaacaaaaggtgatctttgtttagccttcttccgattaagccattcatccaaaatctca |
99 |
Q |
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|||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| |||||||||||| |
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| T |
24358648 |
aaaccaaaccaaacctcgaacttttttatgtggtcgaggagaaacgaaaggtgatctttgtttagccttcttccaattaagccattcgtccaaaatctca |
24358549 |
T |
|
| Q |
100 |
actgatttatcatcatcactatgatcaacattgtcattttcatcatcactgtcacatgaagaataatctatttctactgcattccggtcaaatatgtgta |
199 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |
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| T |
24358548 |
actgattcatcatcatcactatgatcaacattgtcattttcatcatcactgtcacatgaagaataatctatttctactgcattccggccaaaaatgtgta |
24358449 |
T |
|
| Q |
200 |
catcaaacttggaagttcctccatattcaaacaccaccaagcaaccatgtccaaga |
255 |
Q |
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|||||||||||||||||| | |||||||||||| ||||| | |||||||||||| |
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| T |
24358448 |
catcaaacttggaagttcttttatattcaaacacaaccaaagagccatgtccaaga |
24358393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 24370004 - 24369746
Alignment:
| Q |
1 |
aaaccaaaccaa-cctcgaactttcttatgtggtcgaggagaaacaaaaggtgatctttgtttagccttcttccgattaagccattcatccaaaatctca |
99 |
Q |
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|||||||||||| ||| ||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
24370004 |
aaaccaaaccaaaccttgaactttcttatgtggtcgagaagaaacaaaaggtgatctttgtctagccttcttccgattaagccattcatccaaaatctca |
24369905 |
T |
|
| Q |
100 |
actgatttatcatcatcactatgatcaacattgtcattttcatcatcactgtcacatgaag---aataatctatttctactgcattccggtcaaatatgt |
196 |
Q |
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| T |
24369904 |
actgattcatcatcatcactatgatcaacattgtcattttcatcatcactgtcacatgaagtatcatagtctatttctaatgcattcttgccaagtatta |
24369805 |
T |
|
| Q |
197 |
gtacatcaaacttggaagttcctccatattcaaacaccaccaagcaaccatgtccaaga |
255 |
Q |
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||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |
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| T |
24369804 |
ctacatcaaacttgaaagttcctttatattcaaacaccaccaagcaaccatgtccaaga |
24369746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 24364643 - 24364901
Alignment:
| Q |
1 |
aaaccaaaccaa-cctcgaactttcttatgtggtcgaggagaaacaaaaggtgatctttgtttagccttcttccgattaagccattcatccaaaatctca |
99 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||| ||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
24364643 |
aaaccaaaccaaacctcgaactttcttatgtggtcgagtagaaataaaaggtgatctttgtctagccttcttccgattaagccattcatccaaaatctca |
24364742 |
T |
|
| Q |
100 |
actgatttatcatcatcactatgatcaacattgtcattttcatcatcactgtcacatgaaga---ataatctatttctactgcattccggtcaaatatgt |
196 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||||||||| | |||||| |||||| |||||||||||||||||||||| || ||| ||| |
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| T |
24364743 |
actgattcatcatcatcactatgatcaacattgtcattttcatcattagtgtcacttgaagaatcataatctatttctactgcattctggccaagtatta |
24364842 |
T |
|
| Q |
197 |
gtacatcaaacttggaagttcctccatattcaaacaccaccaagcaaccatgtccaaga |
255 |
Q |
| |
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|||||||||||||||||||||| ||||||||||| |||||| || |||||| ||||| |
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| T |
24364843 |
ctacatcaaacttggaagttcctttatattcaaacatcaccaaacagccatgttcaaga |
24364901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 12 - 255
Target Start/End: Complemental strand, 24354974 - 24354731
Alignment:
| Q |
12 |
acctcgaactttcttatgtggtcgaggagaaacaaaaggtgatctttgtttagccttcttccgattaagccattcatccaaaatctcaactgatttatca |
111 |
Q |
| |
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||||| |||||||||||| |||||||||||||| ||||||||||||||| |||| |||||| ||||||||||||| |||||||||||||| || ||| |
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| T |
24354974 |
acctctaactttcttatgaggtcgaggagaaacgaaaggtgatctttgtctagcattcttctgattaagccattcttccaaaatctcaacaga---ctca |
24354878 |
T |
|
| Q |
112 |
tcatcactatgatcaacattgtcattttcatcatcactgtcacatgaag---aataatctatttctactgcattccggtcaaatatgtgtacatcaaact |
208 |
Q |
| |
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|||||||||||||||| || | || ||||||| || |||||||||| ||| |||||||||||||||||| || ||| ||||||||||||||||| |
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| T |
24354877 |
tcatcactatgatcaatatcatttttctcatcataaccatcacatgaaggatcatagtctatttctactgcattctggccaagtatgtgtacatcaaact |
24354778 |
T |
|
| Q |
209 |
tggaagttcctccatattcaaacaccaccaagcaaccatgtccaaga |
255 |
Q |
| |
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| ||| |||| ||||| ||||||||||| ||||||||||||||| |
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| T |
24354777 |
ttgaatctcctttatatttgaacaccaccaaacaaccatgtccaaga |
24354731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 80 - 255
Target Start/End: Complemental strand, 24344634 - 24344459
Alignment:
| Q |
80 |
gccattcatccaaaatctcaactgatttatcatcatcactatgatcaacattgtcattttcatcatcactgtcacatgaag---aataatctatttctac |
176 |
Q |
| |
|
|||||||||| |||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||| ||| ||||||||||| |
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| T |
24344634 |
gccattcatctaaaatctcaactgatt---catcatcactatgaccaacattgtcattttcatcatcagtgtcacatgaagtatcatagtctatttctac |
24344538 |
T |
|
| Q |
177 |
tgcattccggtcaaatatgtgtacatcaaacttggaagttcctccatattcaaacaccaccaagcaaccatgtccaaga |
255 |
Q |
| |
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||||||||| ||| ||| ||||||||| || ||||||||| |||||||||||||||||| | |||||||||||| |
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| T |
24344537 |
tgcattccgaccaagtattactacatcaaatttcgaagttcctttatattcaaacaccaccaaagagccatgtccaaga |
24344459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 151 - 255
Target Start/End: Complemental strand, 24314000 - 24313896
Alignment:
| Q |
151 |
tcacatgaagaataatctatttctactgcattccggtcaaatatgtgtacatcaaacttggaagttcctccatattcaaacaccaccaagcaaccatgtc |
250 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| |||||| |||| ||||||||||||| ||||||||| ||||| |||| ||||| || ||||||| |
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| T |
24314000 |
tcacatgaagaataatctatttctagtgcattctggtcaagtatgagtacatcaaactttgaagttcctttatatttgaacattaccaaacacccatgtc |
24313901 |
T |
|
| Q |
251 |
caaga |
255 |
Q |
| |
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||||| |
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| T |
24313900 |
caaga |
24313896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 21 - 249
Target Start/End: Complemental strand, 24351880 - 24351652
Alignment:
| Q |
21 |
tttcttatgtggtcgaggagaaacaaaaggtgatctttgtttagccttcttccgattaagccattcatccaaaatctcaactgatttatcatcatcacta |
120 |
Q |
| |
|
||||||||||||||||||| ||| || |||| |||| | |||| ||||| |||| |||||||||| ||||||||| ||||| ||| |||| | |
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| T |
24351880 |
tttcttatgtggtcgaggataaaataatggtggcctttttctagcaatcttctgatttcgccattcatctgaaatctcaagtgattcatcgtcat---tt |
24351784 |
T |
|
| Q |
121 |
tgatcaacattgtcattttcatcatcactgtcacatgaaga---ataatctatttctactgcattccggtcaaatatgtgtacatcaaacttggaagttc |
217 |
Q |
| |
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||| ||||||| |||||||||||||| ||||||||||||| ||| |||||||| || ||||| ||| ||| ||||||||||||||||||||| |
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| T |
24351783 |
tgaccaacatttccattttcatcatcagtgtcacatgaagaatcatagtctatttcaaccgcattattaccaagtattagtacatcaaacttggaagttc |
24351684 |
T |
|
| Q |
218 |
ctccatattcaaacaccaccaagcaaccatgt |
249 |
Q |
| |
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|| ||||| |||||||||||| || |||||| |
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|
| T |
24351683 |
ctttatatttaaacaccaccaaacatccatgt |
24351652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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