View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14044_high_2 (Length: 492)
Name: NF14044_high_2
Description: NF14044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14044_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 417; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 36 - 480
Target Start/End: Complemental strand, 42799559 - 42799115
Alignment:
| Q |
36 |
tataatatttagagagaaacgattaatgatacaacaatagcaaaacattgcacaagttatagaacccaatcataccccaaaagctattttgaatcacgaa |
135 |
Q |
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||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |
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| T |
42799559 |
tataatatttagagagaaacgattaatgatacaggaataacaaaacattgcacaagttatagaacccaatcctacccccaaagctattttgaatcacgaa |
42799460 |
T |
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| Q |
136 |
catagctgcatgactgttacatttcaatgatccacgtgctgattttatctaccgctgagctgcgccaaggtgggtaacctgataagagttctcagttttt |
235 |
Q |
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| T |
42799459 |
catagctgcatgactgttacatttcaatgatccacgtgctgattttatctaccgctgagctgcgacaaggtgggtaacctgataagagttctcagttttt |
42799360 |
T |
|
| Q |
236 |
tgcctcacccgaatccaatcatcccgtgcctcaacaactcgacaactcacctcgagcagcccggatgataattcataggatccacaaggtgttgactatc |
335 |
Q |
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| T |
42799359 |
tgcctcacccgaatccaatcatcccgtgcctcaacaactcgacaactcacctcgagcagcccggatgataattcataggatccacaaggtgttgactatc |
42799260 |
T |
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| Q |
336 |
ctagcattttttggaggatagagaacactaaatattggccatacattaaatgatatgaattggttcatcaaaataaaatcataaacatgatcacacataa |
435 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42799259 |
ctagcattttttggaggatagagaacactaaatattggccatacattaaatgatatgaattggttcatcaaaataaaatcataaacatgatcacacataa |
42799160 |
T |
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| Q |
436 |
ttatattagctgcttaaaatagttgtgattcattagaatgatgtt |
480 |
Q |
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| T |
42799159 |
ttatattagctgcttaaaatagttgtgattcattagaattatgtt |
42799115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 433 - 480
Target Start/End: Complemental strand, 28762780 - 28762733
Alignment:
| Q |
433 |
taattatattagctgcttaaaatagttgtgattcattagaatgatgtt |
480 |
Q |
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|||||| || |||||||||| ||||||||||||||||||||| ||||| |
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| T |
28762780 |
taattagatgagctgcttaagatagttgtgattcattagaattatgtt |
28762733 |
T |
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