View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14044_high_8 (Length: 202)
Name: NF14044_high_8
Description: NF14044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14044_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 152; Significance: 1e-80; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 6 - 181
Target Start/End: Original strand, 12485118 - 12485293
Alignment:
| Q |
6 |
aattattactcttagtcgcactcacacatacgagaaatgcatttcgctatttgttcatcgaaacataatatttgtggacaatcaatgtcaactttgcagc |
105 |
Q |
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| T |
12485118 |
aattattactcgtagtcacactcacacatacgagcaatgcatttcgctatttgttcatcgaaacataatatttgtggacaatcaatgtcaactttgcagc |
12485217 |
T |
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| Q |
106 |
ggaaaagacctgcgatgtcatataagaataaatgattgtcaataataagttataaaatagtgagaatgatatacaa |
181 |
Q |
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| T |
12485218 |
ggaaaagacctgcgatgtcatataagaataaatgattgtcaataataagttatcaaatagtgtgtatgatatacaa |
12485293 |
T |
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Target: chr3; HSP #2
Raw Score: 124; E-Value: 5e-64
Query Start/End: Original strand, 24 - 167
Target Start/End: Complemental strand, 14540589 - 14540446
Alignment:
| Q |
24 |
cactcacacatacgagaaatgcatttcgctatttgttcatcgaaacataatatttgtggacaatcaatgtcaactttgcagcggaaaagacctgcgatgt |
123 |
Q |
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| T |
14540589 |
cactcacacatacgatcaatgcatttcgctatttgtttctcgaaacataatatttgtggacaatcaatgtcaactttgcagcggaaaagacctgcgatgt |
14540490 |
T |
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| Q |
124 |
catataagaataaatgattgtcaataataagttataaaatagtg |
167 |
Q |
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| T |
14540489 |
catataagaataaatgattgtcaataataagttatcaaatagtg |
14540446 |
T |
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