View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14044_low_1 (Length: 531)
Name: NF14044_low_1
Description: NF14044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14044_low_1 |
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| [»] chr4 (6 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 280 - 531
Target Start/End: Complemental strand, 50558918 - 50558667
Alignment:
| Q |
280 |
gattcaatggttttacactcatcttgcttactcctaaagcagaatttcaataatcgtcttttctcggtgtttttgtgtagataccatgctattcataagg |
379 |
Q |
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| T |
50558918 |
gattcaatggttttacactcatcttgcttactcctaaagcagaatttcaataatcgtcttttctcggtttttttgtgtagataccatgctattcataagg |
50558819 |
T |
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| Q |
380 |
aggtctatgattggtttgatataagttttgataaatttgggcgaacctcttctcctgagcaaactgaaatttgccagtcaattctccaaaagatatttga |
479 |
Q |
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| T |
50558818 |
aggtctacgattggtttgatataagttttgataaatttgggcgaacctcttctcctgagcaaactgaaatttgccagtcaattttccaaaagatatttga |
50558719 |
T |
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| Q |
480 |
taacaaatggatctccgagagaacaatggagcaggtgttcaattttctattt |
531 |
Q |
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| T |
50558718 |
taacaaatggatctccgagagaacaatggagcaggtgttcaattttctattt |
50558667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 24 - 249
Target Start/End: Complemental strand, 50559174 - 50558949
Alignment:
| Q |
24 |
aattcaatcacaattcgtttcgtttgattctatttaaacaatttgttggttccgattctgattttgaacaggtgtattgagtgccgacgtttatgctcgt |
123 |
Q |
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| T |
50559174 |
aattcaatcgcaattcgtctcgtttgattctatttaaacaatttgttggttccgattctgattttgaacaggtgtgttgagtgccgacgtttatgctcgt |
50559075 |
T |
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| Q |
124 |
tactgtcgacttaggggttacaatgttctctacatttgtggtactgatgagtatggtactccaattattactagagctttggaacagaattgttctccta |
223 |
Q |
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| T |
50559074 |
tactgtcgacttaggggttacaatgttctctacatttgtggtactgatgagtatggtactccaattgttactagagctttggaacagaattgttctccta |
50558975 |
T |
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| Q |
224 |
aacaaattgctgacaagtactatcaa |
249 |
Q |
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| T |
50558974 |
aacaaattgctgacaagtactatcaa |
50558949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 357 - 447
Target Start/End: Complemental strand, 29773538 - 29773448
Alignment:
| Q |
357 |
tagataccatgctattcataaggaggtctatgattggtttgatataagttttgataaatttgggcgaacctcttctcctgagcaaactgaa |
447 |
Q |
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| T |
29773538 |
tagataccatgctattcacaaggaagtctacgattggttcaatataagctttgatgaatttggacgtacttcttcccctgagcaaactgaa |
29773448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 92 - 242
Target Start/End: Complemental strand, 29774798 - 29774648
Alignment:
| Q |
92 |
caggtgtattgagtgccgacgtttatgctcgttactgtcgacttaggggttacaatgttctctacatttgtggtactgatgagtatggtactccaattat |
191 |
Q |
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| T |
29774798 |
caggtgtgttgagtgctgatgtgtttgctcgatactgtcgtcttaggggttacaatgcgatttacatctgtggtaccgatgagtatgggactgcaacgga |
29774699 |
T |
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| Q |
192 |
tactagagctttggaacagaattgttctcctaaacaaattgctgacaagta |
242 |
Q |
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| T |
29774698 |
gactaaagcattggaagagaattgttctcccaaagagatttgtgacaagta |
29774648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 435 - 520
Target Start/End: Complemental strand, 50569065 - 50568978
Alignment:
| Q |
435 |
tgagcaaactgaaatttgccagtcaattctccaaaagata--tttgataacaaatggatctccgagagaacaatggagcaggtgttca |
520 |
Q |
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| T |
50569065 |
tgagctaactgaagtttgcaaggaaattttcaaaaagataaatttgataacaaatggctatccgagagaaccgtggagcaggtgttca |
50568978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 350 - 383
Target Start/End: Complemental strand, 50569104 - 50569071
Alignment:
| Q |
350 |
ttttgtgtagataccatgctattcataaggaggt |
383 |
Q |
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| T |
50569104 |
ttttgtgtagataccatgctattaataaggaggt |
50569071 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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