View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14044_low_3 (Length: 488)
Name: NF14044_low_3
Description: NF14044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14044_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 1 - 473
Target Start/End: Original strand, 37979780 - 37980248
Alignment:
| Q |
1 |
tatagttcatccacacggacaaaattgtacacctgaaaattgtttgtagaaaataataataatcaatttattttcatttcaaaagattaaaaaat---gg |
97 |
Q |
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| T |
37979780 |
tatagttcatccaaacggacaaaattgtacacctgaaaattgtttgtagaaaataataataatcaatttattttcatttcaaaagattaaaaaataatga |
37979879 |
T |
|
| Q |
98 |
tagaaaagaaattgaaagagtcaaagtgtactttatctatgcatcttccagtaacaattgcagtaggaaaacaccttgcaagtttcttaactgttttcct |
197 |
Q |
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| T |
37979880 |
tagaaaagaaattgaaagagtcaaagtgtactttatctatgcatcttccagtaacaattgcagtaggaaaacaccttgcaagtttcttaactgttttcct |
37979979 |
T |
|
| Q |
198 |
catctgatatatatgtgatagtacaatttattagaaaacagatttatttaaaggatatatataaacctgtttttataaacaaagactaaccgattcagac |
297 |
Q |
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| T |
37979980 |
catctgatatatatgtgatagtacaatttattagaaaaaagatttatttaaaggatata----aacctgtttt-ataaacaaagactaaccgattcagac |
37980074 |
T |
|
| Q |
298 |
atgaaagcacggtcagggtcatcgacaataggtgacaaagtaccatcatagtccaaaaacataacaatctgttttccttttgcagcatccataatttgtt |
397 |
Q |
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| T |
37980075 |
atgaaagcacggtcagggtcatcgacaataggtgacaaagtaccatcatagtccaaaaacataacaatctgttttccttttgcagcatccataatttgtt |
37980174 |
T |
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| Q |
398 |
caaacatatctaatgcagatggatggcgaagctgttcgatnnnnnnncaagacatgtgtgaatgcacgagtatttt |
473 |
Q |
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| T |
37980175 |
caaacatatctaatgcagatggatggcgaagctgttcgataaaaat--aatacatgtgtgaatgcacgagtatttt |
37980248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 296 - 355
Target Start/End: Complemental strand, 13311387 - 13311328
Alignment:
| Q |
296 |
acatgaaagcacggtcagggtcatcgacaataggtgacaaagtaccatcatagtccaaaa |
355 |
Q |
| |
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| T |
13311387 |
acatgaaagcacagtcagggttatccacaatgggtgaaaatgttccatcatagtccaaaa |
13311328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 295 - 355
Target Start/End: Complemental strand, 13309491 - 13309431
Alignment:
| Q |
295 |
gacatgaaagcacggtcagggtcatcgacaataggtgacaaagtaccatcatagtccaaaa |
355 |
Q |
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| T |
13309491 |
gacatgaaagcacagtcagaattatccacaattggtgaaaaagttccatcatagtccaaaa |
13309431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 295 - 356
Target Start/End: Original strand, 41342753 - 41342814
Alignment:
| Q |
295 |
gacatgaaagcacggtcagggtcatcgacaataggtgacaaagtaccatcatagtccaaaaa |
356 |
Q |
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| T |
41342753 |
gacatgaaagcacgatcagggtcatttacaatgggtgataaggtaccatcataatctaaaaa |
41342814 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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