View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14044_low_4 (Length: 466)
Name: NF14044_low_4
Description: NF14044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14044_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 336; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 1 - 344
Target Start/End: Complemental strand, 24566589 - 24566246
Alignment:
| Q |
1 |
gatttgacaattgacgggtaacagatatggacaagatacgatttatgaaattacgatcacttgaattgatgaaactgaattttatcaagttgtttttctg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
24566589 |
gatttgacaattgacgggtaacagatatggacaagatacgatttatgaaattatgatcacttgaattgatgaaactgaattttatcaagttgttttcctg |
24566490 |
T |
|
| Q |
101 |
tgtgtttataatcaatataattgacatgttcaattaacccactcgagcacctacattccatatcgtcttctgcataatatgtggattggatgggtatttg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24566489 |
tgtgtttataatcaatataattgacatgttcaattaacccactcgagcacctacattccatatcgtcttctgcataatatgtggattggatgggtatttg |
24566390 |
T |
|
| Q |
201 |
caaaaattatttttagtttgagaatgagaaagataaacaattgtactaaaaaagtttctttatgattaaatgtttctttcatgcaatagtctttcttatc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24566389 |
caaaaattatttttagtttgagaatgagaaagataaacaattgtactaaaaaagtttctttatgattaaatgtttctttcatgcaatagtctttcttatc |
24566290 |
T |
|
| Q |
301 |
aagcatgtatcacgagtgtagaagactatactgatcattgggtt |
344 |
Q |
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| T |
24566289 |
aagcatgtatcacgagtgtagaagactatactgatcattgggtt |
24566246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 357 - 431
Target Start/End: Complemental strand, 24565336 - 24565262
Alignment:
| Q |
357 |
cttataattcaaaatagaaaaatattataagtttttattcttcaagatattacttttttaagatttgacaattat |
431 |
Q |
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| T |
24565336 |
cttataattcaaaatagaaaaatattataagtttttattcttcaagatattacttttttaagatttgacaattat |
24565262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 116; Significance: 8e-59; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 167 - 422
Target Start/End: Original strand, 45532545 - 45532795
Alignment:
| Q |
167 |
cttctgcataatatgtggattggatgggtatttgcaaaaattatttttagtttgagaatgagaaagataaacaattgtactaaaaaagtttctttatgat |
266 |
Q |
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||||||||||||||||||||||||| |||||| ||||||||||| || |||||||||||||||| |||||||||| ||||||||||||||| | |||| |
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| T |
45532545 |
cttctgcataatatgtggattggatatgtattttaaaaaattatttataatttgagaatgagaaaggtaaacaattgaactaaaaaagtttctctgtgat |
45532644 |
T |
|
| Q |
267 |
taaatgtttctttcatgca--atagtctttcttatcaagcatgtatcacgagtgtagaagactatactgatcattgggttataatatgaccacttataat |
364 |
Q |
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| T |
45532645 |
gaaatgcttctttcatgtattagagactttcatatcaagcatgtatcacgaatgtagaa----atactcatcattgggttataatatgaccaattataat |
45532740 |
T |
|
| Q |
365 |
tcaaaatagaaaaatattataagtttttattcttcaagatattacttttttaagattt |
422 |
Q |
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| T |
45532741 |
tcaaaat---aaaaaatttgaagtttttattcttaaagatattacattttaaagattt |
45532795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 105 - 431
Target Start/End: Complemental strand, 44339720 - 44339384
Alignment:
| Q |
105 |
tttataatcaatataattgacatgttcaattaacccactcgagcacctacattccatatcgtcttctgcataatatgtggattggatgggtatttgcaaa |
204 |
Q |
| |
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|||| ||||||||||| | | || ||||||||| ||||| |||||| ||||| || ||||||| ||| ||||||| || ||||| |||||||||| |
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| T |
44339720 |
tttaaaatcaatataaataatatattcaattaaatcactccagcaccaacattttatgctgtcttctacatgatatgtgaatcagatggatatttgcaaa |
44339621 |
T |
|
| Q |
205 |
aattatttttagtttgagaatgagaaagataaacaattgtactaaaaaagtttctttatgattaaatgtttctttcatgcaatag----tctttcttatc |
300 |
Q |
| |
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|| || || ||||||||||| |||||||||||||||||||||||||||| |||||| |||||||||| |||||||||||||||| |||| |||| |
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| T |
44339620 |
aactacttacagtttgagaataagaaagataaacaattgtactaaaaaagcttctttgtgattaaatgcttctttcatgcaatagagacactttgatatc |
44339521 |
T |
|
| Q |
301 |
aagc--atgtatcacgagtgtag-------aagactatactgatcattgggttataatatgaccacttataattcaaaatagaaaaatattataagtttt |
391 |
Q |
| |
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|| | || |||||||||| ||| ||||||| ||| ||||||| ||||||||||||||| |||||||||||| || ||| |||| |||||| |
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| T |
44339520 |
aaacatatatatcacgagtttagaagactcaagactacactcatcattgagttataatatgaccaattataattcaaagtataaa---attagcagtttt |
44339424 |
T |
|
| Q |
392 |
tattcttcaagatattacttttttaagatttgacaattat |
431 |
Q |
| |
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||||||||| |||||| ||||||| ||||||||||||||| |
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| T |
44339423 |
tattcttcatgatatttctttttttagatttgacaattat |
44339384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 105 - 289
Target Start/End: Original strand, 44335247 - 44335431
Alignment:
| Q |
105 |
tttataatcaatataattgacatgttcaattaacccactcgagcacctacattccatatcgtcttctgcataatatgtggattggatgggtatttgcaaa |
204 |
Q |
| |
|
|||| ||||||||||| | | || ||||||||| ||||| |||||||||||| || ||||| ||||| ||||||| || |||| |||||||||| |
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| T |
44335247 |
tttaaaatcaatataaataatatattcaattaaatcactccagcacctacattttatgatgtcttatgcatgatatgtgaatcagatgaatatttgcaaa |
44335346 |
T |
|
| Q |
205 |
aattatttttagtttgagaatgagaaagataaacaattgtactaaaaaagtttctttatgattaaatgtttctttcatgcaatag |
289 |
Q |
| |
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|| || || ||||||||||| |||||||||||||||||||||||||||| |||||| |||||||||| |||||||||||||||| |
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| T |
44335347 |
aactacttacagtttgagaataagaaagataaacaattgtactaaaaaagcttctttgtgattaaatgcttctttcatgcaatag |
44335431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 56 - 136
Target Start/End: Original strand, 45532459 - 45532540
Alignment:
| Q |
56 |
atcacttgaattgatgaaactgaattttatcaagttgtttttctgtgtg-tttataatcaatataattgacatgttcaatta |
136 |
Q |
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|||||||||||| ||||||||||||||||||||||| |||| ||||||| |||| ||||||| ||||||||||||||||||| |
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| T |
45532459 |
atcacttgaatttatgaaactgaattttatcaagtttttttcctgtgtgttttaaaatcaatctaattgacatgttcaatta |
45532540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 342 - 431
Target Start/End: Original strand, 44335504 - 44335590
Alignment:
| Q |
342 |
gttataatatgaccacttataattcaaaatagaaaaatattataagtttttattcttcaagatattacttttttaagatttgacaattat |
431 |
Q |
| |
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|||||||||| |||| |||||||||||| || |||| ||| ||||||||||||||| |||||| ||||||| ||||||||||||||| |
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| T |
44335504 |
gttataatattaccagttataattcaaagtataaaa---ttagcagtttttattcttcatgatatttctttttttagatttgacaattat |
44335590 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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