View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14044_low_5 (Length: 383)

Name: NF14044_low_5
Description: NF14044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14044_low_5
NF14044_low_5
[»] chr4 (8 HSPs)
chr4 (5-216)||(21296543-21296751)
chr4 (214-313)||(52578002-52578101)
chr4 (251-310)||(37772967-37773026)
chr4 (251-314)||(19846583-19846646)
chr4 (254-298)||(13608945-13608989)
chr4 (230-301)||(27270000-27270071)
chr4 (254-310)||(8814058-8814114)
chr4 (224-292)||(53650436-53650504)
[»] chr7 (6 HSPs)
chr7 (214-368)||(47543444-47543598)
chr7 (227-285)||(4609652-4609710)
chr7 (252-323)||(10315127-10315198)
chr7 (225-323)||(31030341-31030439)
chr7 (254-298)||(9628257-9628301)
chr7 (254-314)||(35516750-35516810)
[»] chr5 (10 HSPs)
chr5 (230-368)||(16610602-16610740)
chr5 (214-333)||(31706387-31706506)
chr5 (219-327)||(29651767-29651875)
chr5 (224-313)||(29994646-29994735)
chr5 (231-320)||(704490-704579)
chr5 (255-320)||(27482646-27482711)
chr5 (254-310)||(25942600-25942656)
chr5 (214-305)||(22924099-22924189)
chr5 (225-314)||(30722492-30722581)
chr5 (230-298)||(39839938-39840006)
[»] chr2 (8 HSPs)
chr2 (234-368)||(8090506-8090640)
chr2 (214-313)||(31640257-31640356)
chr2 (225-332)||(40638766-40638873)
chr2 (251-314)||(45131107-45131170)
chr2 (224-298)||(27009226-27009300)
chr2 (229-332)||(20948141-20948244)
chr2 (252-325)||(9420722-9420795)
chr2 (224-288)||(44735982-44736046)
[»] chr6 (11 HSPs)
chr6 (224-368)||(32196744-32196888)
chr6 (225-327)||(7824105-7824207)
chr6 (219-313)||(11324490-11324584)
chr6 (231-314)||(5667346-5667429)
chr6 (251-314)||(16853062-16853125)
chr6 (214-333)||(9200880-9200992)
chr6 (251-314)||(9907213-9907276)
chr6 (254-314)||(18673422-18673482)
chr6 (251-286)||(29599177-29599212)
chr6 (251-301)||(22469477-22469527)
chr6 (224-298)||(34714943-34715017)
[»] chr1 (13 HSPs)
chr1 (214-368)||(32160087-32160240)
chr1 (219-332)||(15259423-15259536)
chr1 (214-314)||(26260769-26260869)
chr1 (214-288)||(27568401-27568475)
chr1 (229-325)||(27363725-27363821)
chr1 (227-300)||(38133034-38133107)
chr1 (254-310)||(17128543-17128599)
chr1 (250-298)||(52626560-52626608)
chr1 (255-319)||(36098596-36098660)
chr1 (230-288)||(9484879-9484937)
chr1 (230-295)||(28442145-28442210)
chr1 (230-307)||(44675129-44675206)
chr1 (254-310)||(8527077-8527133)
[»] chr3 (12 HSPs)
chr3 (214-334)||(4741017-4741137)
chr3 (229-332)||(13043382-13043485)
chr3 (229-332)||(13051459-13051562)
chr3 (221-295)||(12947907-12947981)
chr3 (214-288)||(14788885-14788959)
chr3 (224-314)||(47161016-47161106)
chr3 (231-307)||(6894228-6894304)
chr3 (230-309)||(25845682-25845761)
chr3 (214-307)||(20017410-20017503)
chr3 (254-310)||(21408114-21408170)
chr3 (254-314)||(23050173-23050233)
chr3 (230-298)||(25408798-25408866)
[»] chr8 (3 HSPs)
chr8 (230-298)||(8462510-8462578)
chr8 (254-314)||(38738483-38738543)
chr8 (214-327)||(5751999-5752112)


Alignment Details
Target: chr4 (Bit Score: 169; Significance: 2e-90; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 5 - 216
Target Start/End: Complemental strand, 21296751 - 21296543
Alignment:
Q  5 atggatggatcaaaatcacgtaatttgataaatagaggggtccagattgcatatttagaaatgagtgttcaaaatcgtaaatgagaataattatgagatt 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  21296751 atggatggatcaaaatcacgtaatttgataaatagaggggtccagattgcatatttacaaatgagtgttcaaaatcgtaaatgagaataattatgagatt 21296652  T
Q  105 gaaattgaattaaaccttnnnnnnntaattgacaagaattaaaccttaaatttgttttacagttgtgtaggtttcttcacgttgtgctatataacttaaa 204  Q
    ||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||       
T  21296651 gaaattgaattaaaccttaaaaaaataattgacaagaattaaaccttaaatttgttttacagttgtgtaggtttctccacgttgtgctatataactt--- 21296555  T
Q  205 ctctggattagt 216  Q
    ||||||||||||    
T  21296554 ctctggattagt 21296543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 214 - 313
Target Start/End: Original strand, 52578002 - 52578101
Alignment:
Q  214 agtcacttgtttttacgtggttgaagacgaagtttatttctcttcccttcaattactatgggtggtggcttagtccatttaccattttaggcattggcta 313  Q
    |||| |||| ||||||||||||||||  ||||||| | |||||||||||||||||  |||| |||||||||||| | ||| ||||| ||||||| |||||    
T  52578002 agtcccttgcttttacgtggttgaaggtgaagtttgtatctcttcccttcaattatcatggttggtggcttagtgcgtttgccattctaggcataggcta 52578101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 251 - 310
Target Start/End: Original strand, 37772967 - 37773026
Alignment:
Q  251 ttctcttcccttcaattactatgggtggtggcttagtccatttaccattttaggcattgg 310  Q
    ||||||||||||||||||| |||| |||||||||||||| || |||||||| ||||||||    
T  37772967 ttctcttcccttcaattaccatggttggtggcttagtcctttcaccattttgggcattgg 37773026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 251 - 314
Target Start/End: Original strand, 19846583 - 19846646
Alignment:
Q  251 ttctcttcccttcaattactatgggtggtggcttagtccatttaccattttaggcattggctaa 314  Q
    ||||||||||||||||||  ||||||||||| ||||||| |||||||| || ||||||| ||||    
T  19846583 ttctcttcccttcaattatcatgggtggtggattagtccgtttaccatgttgggcattgtctaa 19846646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 254 - 298
Target Start/End: Complemental strand, 13608989 - 13608945
Alignment:
Q  254 tcttcccttcaattactatgggtggtggcttagtccatttaccat 298  Q
    |||||||||||||||| |||| |||||||||||||| ||||||||    
T  13608989 tcttcccttcaattaccatggttggtggcttagtccgtttaccat 13608945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 230 - 301
Target Start/End: Complemental strand, 27270071 - 27270000
Alignment:
Q  230 gtggttgaagacgaagtttatttctcttcccttcaattactatgggtggtggcttagtccatttaccatttt 301  Q
    |||||||||| |||| |||  ||| ||||||||||||||  |||| ||||||||||||||||| || |||||    
T  27270071 gtggttgaaggcgaaatttccttcacttcccttcaattatcatggttggtggcttagtccattcacaatttt 27270000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 254 - 310
Target Start/End: Original strand, 8814058 - 8814114
Alignment:
Q  254 tcttcccttcaattactatgggtggtggcttagtccatttaccattttaggcattgg 310  Q
    ||||||| |||||||| |||| |||||||||||||| ||| | ||| ||||||||||    
T  8814058 tcttcccctcaattaccatggttggtggcttagtccgttttctattctaggcattgg 8814114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 224 - 292
Target Start/End: Complemental strand, 53650504 - 53650436
Alignment:
Q  224 ttttacgtggttgaagacgaagtttatttctcttcccttcaattactatgggtggtggcttagtccatt 292  Q
    ||||| |||||||||| ||||||||| | | ||||| ||||||||| |||  || ||||||||||||||    
T  53650504 ttttatgtggttgaaggcgaagtttactacccttcctttcaattaccatgcttgatggcttagtccatt 53650436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 119; Significance: 1e-60; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 214 - 368
Target Start/End: Original strand, 47543444 - 47543598
Alignment:
Q  214 agtcacttgtttttacgtggttgaagacgaagtttatttctcttcccttcaattactatgggtggtggcttagtccatttaccattttaggcattggcta 313  Q
    |||| |||| |||||||||||||||||||||||||| ||||||||||||||||||  ||||||| ||||||||||| |||||||||||||||||||||||    
T  47543444 agtcgcttgcttttacgtggttgaagacgaagtttagttctcttcccttcaattatcatgggtgatggcttagtccgtttaccattttaggcattggcta 47543543  T
Q  314 agagtttcttttctgttttttgtttatgatcttttaggcaacttttgtatatatt 368  Q
    ||||||||||||||| |||||||||||||||| ||||||||||||||||||||||    
T  47543544 agagtttcttttctgctttttgtttatgatctgttaggcaacttttgtatatatt 47543598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 227 - 285
Target Start/End: Complemental strand, 4609710 - 4609652
Alignment:
Q  227 tacgtggttgaagacgaagtttatttctcttcccttcaattactatgggtggtggctta 285  Q
    ||||||||||||| |||||| ||||||||||||| |||||||| |||||||||||||||    
T  4609710 tacgtggttgaaggcgaagtatatttctcttcccctcaattaccatgggtggtggctta 4609652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 252 - 323
Target Start/End: Original strand, 10315127 - 10315198
Alignment:
Q  252 tctcttcccttcaattactatgggtggtggcttagtccatttaccattttaggcattggctaagagtttctt 323  Q
    ||||||||| |||||||| | |||||||||||||| || ||||| ||||| ||||| ||||||| |||||||    
T  10315127 tctcttcccctcaattaccacgggtggtggcttagcccgtttactattttgggcataggctaagtgtttctt 10315198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 225 - 323
Target Start/End: Complemental strand, 31030439 - 31030341
Alignment:
Q  225 tttacgtggttgaagacgaagtttatttctcttcccttcaattactatgggtggtggcttagtccatttaccattttaggcattggctaagagtttctt 323  Q
    |||||||||||||||  ||||| |   ||||||||| |||||||| | |||||||||||||  || ||||| ||||| ||||| ||||||| |||||||    
T  31030439 tttacgtggttgaaggtgaagtattcctctcttcccctcaattaccacgggtggtggcttaacccgtttactattttgggcataggctaagtgtttctt 31030341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 254 - 298
Target Start/End: Original strand, 9628257 - 9628301
Alignment:
Q  254 tcttcccttcaattactatgggtggtggcttagtccatttaccat 298  Q
    |||||||||||||||| |||| |||||||||||||| ||||||||    
T  9628257 tcttcccttcaattaccatggttggtggcttagtccgtttaccat 9628301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 254 - 314
Target Start/End: Original strand, 35516750 - 35516810
Alignment:
Q  254 tcttcccttcaattactatgggtggtggcttagtccatttaccattttaggcattggctaa 314  Q
    ||||||||| ||||  ||||| |||||||||||||||||||| ||  ||||||||||||||    
T  35516750 tcttcccttaaatttttatggttggtggcttagtccatttactatcctaggcattggctaa 35516810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 115; Significance: 3e-58; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 230 - 368
Target Start/End: Original strand, 16610602 - 16610740
Alignment:
Q  230 gtggttgaagacgaagtttatttctcttcccttcaattactatgggtggtggcttagtccatttaccattttaggcattggctaagagtttcttttctgt 329  Q
    ||||||||||||||||||| |||||||||||||||||||  ||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||    
T  16610602 gtggttgaagacgaagtttgtttctcttcccttcaattatcatgggtggtggcttagtccgtttaccattttaggcattggctaatagtttcttttctgt 16610701  T
Q  330 tttttgtttatgatcttttaggcaacttttgtatatatt 368  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  16610702 tttttgtttatgatctgttaggcaacttttgtatatatt 16610740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 214 - 333
Target Start/End: Complemental strand, 31706506 - 31706387
Alignment:
Q  214 agtcacttgtttttacgtggttgaagacgaagtttatttctcttcccttcaattactatgggtggtggcttagtccatttaccattttaggcattggcta 313  Q
    |||| |||| |||||||||||| ||| |||||| ||||||||||||| |||||||| ||||||||||||||||||| |||||||| || ||||| |||||    
T  31706506 agtcgcttgcttttacgtggttaaaggcgaagtatatttctcttcccctcaattaccatgggtggtggcttagtccgtttaccatattgggcataggcta 31706407  T
Q  314 agagtttcttttctgttttt 333  Q
    ||||||||||||||||||||    
T  31706406 agagtttcttttctgttttt 31706387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 219 - 327
Target Start/End: Complemental strand, 29651875 - 29651767
Alignment:
Q  219 cttgtttttacgtggttgaagacgaagtttatttctcttcccttcaattactatgggtggtggcttagtccatttaccattttaggcattggctaagagt 318  Q
    |||| |||| ||||||||||  ||||||   ||||||||| | |||||||  ||||||||||||||||||| |||||||| || ||||| |||||||  |    
T  29651875 cttgctttttcgtggttgaatgcgaagtacttttctcttctcctcaattatcatgggtggtggcttagtccgtttaccatgttgggcataggctaaggtt 29651776  T
Q  319 ttcttttct 327  Q
    |||||||||    
T  29651775 ttcttttct 29651767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 224 - 313
Target Start/End: Original strand, 29994646 - 29994735
Alignment:
Q  224 ttttacgtggttgaagacgaagtttatttctcttcccttcaattactatgggtggtggcttagtccatttaccattttaggcattggcta 313  Q
    ||||| ||||||||||  |||||||  || |||||||||||||||  |||| |||||||||| ||| |||||  ||||||||||||||||    
T  29994646 ttttaagtggttgaaggtgaagtttccttttcttcccttcaattatcatggttggtggcttaatccgtttactgttttaggcattggcta 29994735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 231 - 320
Target Start/End: Complemental strand, 704579 - 704490
Alignment:
Q  231 tggttgaagacgaagtttatttctcttcccttcaattactatgggtggtggcttagtccatttaccattttaggcattggctaagagttt 320  Q
    ||||||||| | ||||||  || |||||| ||||||||  |||||||||| |||||||| ||||||||  | |||||||||||| |||||    
T  704579 tggttgaaggcaaagtttgcttttcttccattcaattatcatgggtggtgacttagtccgtttaccatactgggcattggctaaaagttt 704490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 255 - 320
Target Start/End: Complemental strand, 27482711 - 27482646
Alignment:
Q  255 cttcccttcaattactatgggtggtggcttagtccatttaccattttaggcattggctaagagttt 320  Q
    ||||||||||||||  |||| |||||||||||||| || ||||| || ||||| ||||||||||||    
T  27482711 cttcccttcaattatcatggctggtggcttagtccgttcaccatgttgggcataggctaagagttt 27482646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 254 - 310
Target Start/End: Complemental strand, 25942656 - 25942600
Alignment:
Q  254 tcttcccttcaattactatgggtggtggcttagtccatttaccattttaggcattgg 310  Q
    |||||| |||||||| ||||| |||||||||||||| || |||||| ||||||||||    
T  25942656 tcttccgttcaattattatggttggtggcttagtccgttcaccattctaggcattgg 25942600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 214 - 305
Target Start/End: Complemental strand, 22924189 - 22924099
Alignment:
Q  214 agtcacttgtttttacgtggttgaagacgaagtttatttctcttcccttcaattactatgggtggtggcttagtccatttaccattttaggc 305  Q
    |||| |||| |||||||||||||||| |||| ||||  | |||| ||||||||||| |||||| || ||||||||| ||||| ||| |||||    
T  22924189 agtctcttggttttacgtggttgaaggcgaaatttacatttctttccttcaattaccatgggt-gttgcttagtccttttactattctaggc 22924099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 314
Target Start/End: Complemental strand, 30722581 - 30722492
Alignment:
Q  225 tttacgtggttgaagacgaagtttatttctcttcccttcaattactatgggtggtggcttagtccatttaccattttaggcattggctaa 314  Q
    ||||||||||||||| |||||| |   ||||||||| |||||||| | ||||||||| |||| || ||||| ||| | ||||| ||||||    
T  30722581 tttacgtggttgaaggcgaagtattcctctcttcccctcaattaccacgggtggtggattagcccgtttactattatgggcataggctaa 30722492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 298
Target Start/End: Original strand, 39839938 - 39840006
Alignment:
Q  230 gtggttgaagacgaagtttatttctcttcccttcaattactatgggtggtggcttagtccatttaccat 298  Q
    |||||||||||||||||||   ||||||||||| || ||  |||| |||||||||||||| || |||||    
T  39839938 gtggttgaagacgaagtttccatctcttccctttaactatcatggttggtggcttagtcccttcaccat 39840006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 115; Significance: 3e-58; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 234 - 368
Target Start/End: Original strand, 8090506 - 8090640
Alignment:
Q  234 ttgaagacgaagtttatttctcttcccttcaattactatgggtggtggcttagtccatttaccattttaggcattggctaagagtttcttttctgttttt 333  Q
    ||||||||| |||||||||||||||||||||||||  ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  8090506 ttgaagacggagtttatttctcttcccttcaattatcatgggtggtggcttagtccgtttaccattttaggcattggctaagagtttcttttctgttttt 8090605  T
Q  334 tgtttatgatcttttaggcaacttttgtatatatt 368  Q
    |||||||||||| ||||||||||||||||||||||    
T  8090606 tgtttatgatctgttaggcaacttttgtatatatt 8090640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 214 - 313
Target Start/End: Original strand, 31640257 - 31640356
Alignment:
Q  214 agtcacttgtttttacgtggttgaagacgaagtttatttctcttcccttcaattactatgggtggtggcttagtccatttaccattttaggcattggcta 313  Q
    ||||||||| |||||||||||||||| |||| |||  |||||||||| |||||||| |||| |||||||||||||| ||||| ||| ||||||| |||||    
T  31640257 agtcacttgcttttacgtggttgaaggcgaaatttgcttctcttcccctcaattaccatggatggtggcttagtccgtttacaattataggcataggcta 31640356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 225 - 332
Target Start/End: Complemental strand, 40638873 - 40638766
Alignment:
Q  225 tttacgtggttgaagacgaagtttatttctcttcccttcaattactatgggtggtggcttagtccatttaccattttaggcattggctaagagtttcttt 324  Q
    ||||||||||||| |  ||||| |  ||||||||||||||||||| ||||||||||||||||||| ||||| ||||| | ||| |||||| |||||||||    
T  40638873 tttacgtggttgatgttgaagtatgcttctcttcccttcaattaccatgggtggtggcttagtccgtttacgattttggacataggctaaaagtttcttt 40638774  T
Q  325 tctgtttt 332  Q
    | ||||||    
T  40638773 tatgtttt 40638766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 251 - 314
Target Start/End: Complemental strand, 45131170 - 45131107
Alignment:
Q  251 ttctcttcccttcaattactatgggtggtggcttagtccatttaccattttaggcattggctaa 314  Q
    ||||||||||||||||||  ||||||||||||||||||||||||||||  | ||||||||||||    
T  45131170 ttctcttcccttcaattatcatgggtggtggcttagtccatttaccatgctgggcattggctaa 45131107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 224 - 298
Target Start/End: Original strand, 27009226 - 27009300
Alignment:
Q  224 ttttacgtggttgaagacgaagtttatttctcttcccttcaattactatgggtggtggcttagtccatttaccat 298  Q
    ||||| ||| |||||| |||| |||| ||||||||||||||||||| |||| |||||||||||||| ||||||||    
T  27009226 ttttaggtgattgaaggcgaaatttacttctcttcccttcaattaccatggttggtggcttagtccgtttaccat 27009300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 229 - 332
Target Start/End: Original strand, 20948141 - 20948244
Alignment:
Q  229 cgtggttgaagacgaagtttatttctcttcccttcaattactatgggtggtggcttagtccatttaccattttaggcattggctaagagtttcttttctg 328  Q
    ||||||||||| |||||| |  |||||||| | |||||||| ||||||||||||||||||| |||||||| || ||  | |||||||  ||||||||||     
T  20948141 cgtggttgaaggcgaagtattcttctcttcgcctcaattaccatgggtggtggcttagtccgtttaccatgttgggtgtaggctaaggttttcttttctt 20948240  T
Q  329 tttt 332  Q
    ||||    
T  20948241 tttt 20948244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 252 - 325
Target Start/End: Complemental strand, 9420795 - 9420722
Alignment:
Q  252 tctcttcccttcaattactatgggtggtggcttagtccatttaccattttaggcattggctaagagtttctttt 325  Q
    ||||||||| |||||||  |||||||||||||||| || ||||| ||||||||||| |||||||  ||||||||    
T  9420795 tctcttcccctcaattatcatgggtggtggcttagcccgtttactattttaggcataggctaaggttttctttt 9420722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 224 - 288
Target Start/End: Complemental strand, 44736046 - 44735982
Alignment:
Q  224 ttttacgtggttgaagacgaagtttatttctcttcccttcaattactatgggtggtggcttagtc 288  Q
    ||||| |||||||||| ||||||||| | |||||||||||||||   |||| | |||||||||||    
T  44736046 ttttatgtggttgaaggcgaagtttaatactcttcccttcaattttcatggttagtggcttagtc 44735982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 113; Significance: 4e-57; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 224 - 368
Target Start/End: Complemental strand, 32196888 - 32196744
Alignment:
Q  224 ttttacgtggttgaagacgaagtttatttctcttcccttcaattactatgggtggtggcttagtccatttaccattttaggcattggctaagagtttctt 323  Q
    |||||| ||||||||||||||||||| ||||||||||||||||||  ||||||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  32196888 ttttacatggttgaagacgaagtttagttctcttcccttcaattaacatgggtgatggcttagtccgtttaccattttaggcattggctaagagtttctt 32196789  T
Q  324 ttctgttttttgtttatgatcttttaggcaacttttgtatatatt 368  Q
    ||||| |||||||||||||||| ||||||||||||||||||||||    
T  32196788 ttctgctttttgtttatgatctgttaggcaacttttgtatatatt 32196744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 225 - 327
Target Start/End: Complemental strand, 7824207 - 7824105
Alignment:
Q  225 tttacgtggttgaagacgaagtttatttctcttcccttcaattactatgggtggtggcttagtccatttaccattttaggcattggctaagagtttcttt 324  Q
    ||||||||||||||| |||||| |   ||||||||| |||||||| |||||||||||||||| || || |||||||| ||||| ||||||| ||||||||    
T  7824207 tttacgtggttgaaggcgaagtattcctctcttcccctcaattaccatgggtggtggcttagcccgttcaccattttgggcataggctaagtgtttcttt 7824108  T
Q  325 tct 327  Q
    |||    
T  7824107 tct 7824105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 219 - 313
Target Start/End: Original strand, 11324490 - 11324584
Alignment:
Q  219 cttgtttttacgtggttgaagacgaagtttatttctcttcccttcaattactatgggtggtggcttagtccatttaccattttaggcattggcta 313  Q
    |||| |||||||||||||||| |||| |||  ||||||||||||||||||  ||||||||||||||||||| ||| ||||| | ||||| |||||    
T  11324490 cttgcttttacgtggttgaaggcgaaatttgcttctcttcccttcaattatcatgggtggtggcttagtccgtttgccattatgggcataggcta 11324584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 231 - 314
Target Start/End: Complemental strand, 5667429 - 5667346
Alignment:
Q  231 tggttgaagacgaagtttatttctcttcccttcaattactatgggtggtggcttagtccatttaccattttaggcattggctaa 314  Q
    ||||||||||||| ||||||  ||||| ||||||||||  |||| |||||| ||||||| ||||| ||||||||||| ||||||    
T  5667429 tggttgaagacgaggtttataactctttccttcaattatcatggttggtggattagtccgtttactattttaggcataggctaa 5667346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 251 - 314
Target Start/End: Original strand, 16853062 - 16853125
Alignment:
Q  251 ttctcttcccttcaattactatgggtggtggcttagtccatttaccattttaggcattggctaa 314  Q
    |||||||||  |||||||||||||||||||||||||||| ||||||||||| | ||| ||||||    
T  16853062 ttctcttcctctcaattactatgggtggtggcttagtccgtttaccattttggacataggctaa 16853125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 214 - 333
Target Start/End: Complemental strand, 9200992 - 9200880
Alignment:
Q  214 agtcacttgtttttacgtggttgaagacgaagtttatttctcttcccttcaattactatgggtggtggcttagtccatttaccattttaggcattggcta 313  Q
    |||| |||| ||||||||||| |||| |||||| ||||||||||||| |||||||| ||||||| ||        | |||||||| || | ||| |||||    
T  9200992 agtcgcttgcttttacgtggtagaaggcgaagtatatttctcttcccctcaattacaatgggtgttg-------tcgtttaccatattggacataggcta 9200900  T
Q  314 agagtttcttttctgttttt 333  Q
    ||||||||||||||||||||    
T  9200899 agagtttcttttctgttttt 9200880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 251 - 314
Target Start/End: Original strand, 9907213 - 9907276
Alignment:
Q  251 ttctcttcccttcaattactatgggtggtggcttagtccatttaccattttaggcattggctaa 314  Q
    |||| |||||||||||||  ||| ||||||||||| |||||| |||||||||||||| ||||||    
T  9907213 ttctattcccttcaattatcatgcgtggtggcttaatccattcaccattttaggcataggctaa 9907276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 254 - 314
Target Start/End: Original strand, 18673422 - 18673482
Alignment:
Q  254 tcttcccttcaattactatgggtggtggcttagtccatttaccattttaggcattggctaa 314  Q
    ||||||| |||||||  |||| ||||||||||| || ||||| ||||||||||||||||||    
T  18673422 tcttcccctcaattatcatggttggtggcttagcccgtttactattttaggcattggctaa 18673482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 251 - 286
Target Start/End: Complemental strand, 29599212 - 29599177
Alignment:
Q  251 ttctcttcccttcaattactatgggtggtggcttag 286  Q
    |||||||||||||||||||||||| |||||||||||    
T  29599212 ttctcttcccttcaattactatggttggtggcttag 29599177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 251 - 301
Target Start/End: Original strand, 22469477 - 22469527
Alignment:
Q  251 ttctcttcccttcaattactatgggtggtggcttagtccatttaccatttt 301  Q
    ||||||||||||||||||  |||  ||||||||||||||||| ||||||||    
T  22469477 ttctcttcccttcaattatcatgcttggtggcttagtccattcaccatttt 22469527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 298
Target Start/End: Original strand, 34714943 - 34715017
Alignment:
Q  224 ttttacgtggttgaagacgaagtttatttctcttcccttcaattactatgggtggtggcttagtccatttaccat 298  Q
    ||||| |||||||||  | || |||| |||||||||| |||||||| |||| |||||||||||||  ||||||||    
T  34714943 ttttaggtggttgaaagcaaaatttacttctcttcccatcaattaccatggttggtggcttagtctgtttaccat 34715017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 111; Significance: 6e-56; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 214 - 368
Target Start/End: Original strand, 32160087 - 32160240
Alignment:
Q  214 agtcacttgtttttacgtggttgaagacgaagtttatttctcttcccttcaattactatgggtggtggcttagtccatttaccattttaggcattggcta 313  Q
    |||| |||| |||||||||||||| ||||||||||||||||||| ||||||||||| || |||||||||||||||| |||||||||||||||||||||||    
T  32160087 agtcgcttgcttttacgtggttgaggacgaagtttatttctctttccttcaattaccattggtggtggcttagtccgtttaccattttaggcattggcta 32160186  T
Q  314 agagtttcttttctgttttttgtttatgatcttttaggcaacttttgtatatatt 368  Q
    ||||||||||||||| |||||||||||||||| ||||| ||||||||||||||||    
T  32160187 agagtttcttttctg-tttttgtttatgatctcttaggtaacttttgtatatatt 32160240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 219 - 332
Target Start/End: Original strand, 15259423 - 15259536
Alignment:
Q  219 cttgtttttacgtggttgaagacgaagtttatttctcttcccttcaattactatgggtggtggcttagtccatttaccattttaggcattggctaagagt 318  Q
    |||| |||||||||||||||| |||||| ||||||||||||| |||||||| ||||||||| ||||||||| ||||||||  | ||||| ||||||||||    
T  15259423 cttgcttttacgtggttgaaggcgaagtatatttctcttcccctcaattaccatgggtggtagcttagtccgtttaccatactgggcataggctaagagt 15259522  T
Q  319 ttcttttctgtttt 332  Q
    ||||||||||||||    
T  15259523 ttcttttctgtttt 15259536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 214 - 314
Target Start/End: Original strand, 26260769 - 26260869
Alignment:
Q  214 agtcacttgtttttacgtggttgaagacgaagtttatttctcttcccttcaattactatgggtggtggcttagtccatttaccattttaggcattggcta 313  Q
    |||| |||| |||||||||||||||| ||||||||  ||||||||||||||||||  |||||||||||||||||||||||||||| || |||||||||||    
T  26260769 agtctcttgcttttacgtggttgaaggcgaagtttgcttctcttcccttcaattatcatgggtggtggcttagtccatttaccatgttgggcattggcta 26260868  T
Q  314 a 314  Q
    |    
T  26260869 a 26260869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 214 - 288
Target Start/End: Original strand, 27568401 - 27568475
Alignment:
Q  214 agtcacttgtttttacgtggttgaagacgaagtttatttctcttcccttcaattactatgggtggtggcttagtc 288  Q
    |||| |||| |||||||||||||||| | || ||| |||||||||||||||||||| ||||||||||||||||||    
T  27568401 agtctcttgcttttacgtggttgaaggcaaaatttgtttctcttcccttcaattaccatgggtggtggcttagtc 27568475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 229 - 325
Target Start/End: Complemental strand, 27363821 - 27363725
Alignment:
Q  229 cgtggttgaagacgaagtttatttctcttcccttcaattactatgggtggtggcttagtccatttaccattttaggcattggctaagagtttctttt 325  Q
    ||||||||||| ||||||    ||||||| || |||||||| |||||| |||||||||||| ||||||||||| ||||| |||||||  ||||||||    
T  27363821 cgtggttgaaggcgaagtactcttctctttccctcaattaccatgggttgtggcttagtccgtttaccattttgggcataggctaaggttttctttt 27363725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 227 - 300
Target Start/End: Complemental strand, 38133107 - 38133034
Alignment:
Q  227 tacgtggttgaagacgaagtttatttctcttcccttcaattactatgggtggtggcttagtccatttaccattt 300  Q
    ||||||||||||| |||  ||| ||| |||||||||||| ||| |||| |||||||||||||||||| ||||||    
T  38133107 tacgtggttgaaggcgagatttgtttttcttcccttcaactacaatggatggtggcttagtccatttgccattt 38133034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 254 - 310
Target Start/End: Original strand, 17128543 - 17128599
Alignment:
Q  254 tcttcccttcaattactatgggtggtggcttagtccatttaccattttaggcattgg 310  Q
    |||||||||||||||| || | |||||||||||||| |||||||| |||||||||||    
T  17128543 tcttcccttcaattaccattgttggtggcttagtccttttaccatgttaggcattgg 17128599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 250 - 298
Target Start/End: Original strand, 52626560 - 52626608
Alignment:
Q  250 tttctcttcccttcaattactatgggtggtggcttagtccatttaccat 298  Q
    |||||||||||||||||||  |||| |||||||||||||||||||||||    
T  52626560 tttctcttcccttcaattatcatggttggtggcttagtccatttaccat 52626608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 255 - 319
Target Start/End: Complemental strand, 36098660 - 36098596
Alignment:
Q  255 cttcccttcaattactatgggtggtggcttagtccatttaccattttaggcattggctaagagtt 319  Q
    ||||||||||||||  |||| |||||||||||||| || ||||| || ||||| |||||||||||    
T  36098660 cttcccttcaattatcatggctggtggcttagtccgttcaccatgttgggcataggctaagagtt 36098596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 288
Target Start/End: Original strand, 9484879 - 9484937
Alignment:
Q  230 gtggttgaagacgaagtttatttctcttcccttcaattactatgggtggtggcttagtc 288  Q
    |||||||||| |||| ||| |||||||||||||||||||  |||| |||||| ||||||    
T  9484879 gtggttgaaggcgaaatttgtttctcttcccttcaattatcatggttggtggtttagtc 9484937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 295
Target Start/End: Complemental strand, 28442210 - 28442145
Alignment:
Q  230 gtggttgaagacgaagtttatttctcttcccttcaattactatgggtggtggcttagtccatttac 295  Q
    ||||||||||  ||||||| | ||||||||||| || ||  |||| ||||||||||||||||||||    
T  28442210 gtggttgaaggtgaagtttgtctctcttccctttaactatcatggttggtggcttagtccatttac 28442145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 307
Target Start/End: Original strand, 44675129 - 44675206
Alignment:
Q  230 gtggttgaagacgaagtttatttctcttcccttcaattactatgggtggtggcttagtccatttaccattttaggcat 307  Q
    |||||||||| |||| |||  ||| ||||||||||||||  |||| |||||||||||||| |||| ||| || |||||    
T  44675129 gtggttgaaggcgaaatttgcttcccttcccttcaattatcatggttggtggcttagtccgtttatcatgttgggcat 44675206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 254 - 310
Target Start/End: Original strand, 8527077 - 8527133
Alignment:
Q  254 tcttcccttcaattactatgggtggtggcttagtccatttaccattttaggcattgg 310  Q
    |||||||||||||||  |||| ||||| ||||||||||||||| ||| || ||||||    
T  8527077 tcttcccttcaattatcatggttggtgacttagtccatttaccttttcagacattgg 8527133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 93; Significance: 3e-45; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 214 - 334
Target Start/End: Original strand, 4741017 - 4741137
Alignment:
Q  214 agtcacttgtttttacgtggttgaagacgaagtttatttctcttcccttcaattactatgggtggtggcttagtccatttaccattttaggcattggcta 313  Q
    |||| |||| ||||||||||||||||||||||| |||||||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||| |||||    
T  4741017 agtcgcttgcttttacgtggttgaagacgaagtatatttctcttcccttcaattaccatgggtgatggcttagtccgtttaccattttaggcataggcta 4741116  T
Q  314 agagtttcttttctgtttttt 334  Q
    |||||||||||||||||||||    
T  4741117 agagtttcttttctgtttttt 4741137  T

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Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 229 - 332
Target Start/End: Original strand, 13043382 - 13043485
Alignment:
Q  229 cgtggttgaagacgaagtttatttctcttcccttcaattactatgggtggtggcttagtccatttaccattttaggcattggctaagagtttcttttctg 328  Q
    ||||||||||| |||||| | | ||||||||| |||| ||| |||||||||||||||  || || |||||||| ||||| |||||||||||||||||||     
T  13043382 cgtggttgaaggcgaagtatttctctcttcccctcaactaccatgggtggtggcttaacccgttcaccattttgggcataggctaagagtttcttttcta 13043481  T
Q  329 tttt 332  Q
    ||||    
T  13043482 tttt 13043485  T

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Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 229 - 332
Target Start/End: Original strand, 13051459 - 13051562
Alignment:
Q  229 cgtggttgaagacgaagtttatttctcttcccttcaattactatgggtggtggcttagtccatttaccattttaggcattggctaagagtttcttttctg 328  Q
    ||||||||||| |||||| | | ||||||||| |||| ||| |||||||||||||||  || || |||||||| ||||| |||||||||||||||||||     
T  13051459 cgtggttgaaggcgaagtatttctctcttcccctcaactaccatgggtggtggcttaacccgttcaccattttgggcataggctaagagtttcttttcta 13051558  T
Q  329 tttt 332  Q
    ||||    
T  13051559 tttt 13051562  T

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Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 221 - 295
Target Start/End: Complemental strand, 12947981 - 12947907
Alignment:
Q  221 tgtttttacgtggttgaagacgaagtttatttctcttcccttcaattactatgggtggtggcttagtccatttac 295  Q
    ||||||||||| ||||||| ||||||||   |||||| ||||||||||||||||||||||| ||||||| |||||    
T  12947981 tgtttttacgtcgttgaagtcgaagtttgcctctctttccttcaattactatgggtggtggtttagtccgtttac 12947907  T

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Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 214 - 288
Target Start/End: Original strand, 14788885 - 14788959
Alignment:
Q  214 agtcacttgtttttacgtggttgaagacgaagtttatttctcttcccttcaattactatgggtggtggcttagtc 288  Q
    |||| |||| |||||||||||||||| |||| ||| |||||||||||| ||||||| ||| ||||||||||||||    
T  14788885 agtcccttgcttttacgtggttgaaggcgaaatttgtttctcttccctccaattaccatgagtggtggcttagtc 14788959  T

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Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 224 - 314
Target Start/End: Original strand, 47161016 - 47161106
Alignment:
Q  224 ttttacgtggttgaagacgaagtttatttctcttcccttcaattactatgggtggtggcttagtccatttaccattttaggcattggctaa 314  Q
    ||||| ||||||||||  |||||||  ||||||||| ||||||||| |||| ||||||||||| || ||||   |||||||||||||||||    
T  47161016 ttttaagtggttgaaggtgaagtttccttctcttccattcaattaccatggttggtggcttagaccgtttattgttttaggcattggctaa 47161106  T

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Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 231 - 307
Target Start/End: Original strand, 6894228 - 6894304
Alignment:
Q  231 tggttgaagacgaagtttatttctcttcccttcaattactatgggtggtggcttagtccatttaccattttaggcat 307  Q
    ||||||||| ||| ||||||  ||||||||||||||||  |||| |||||| ||||||| ||||| |||||||||||    
T  6894228 tggttgaaggcgaggtttataactcttcccttcaattatcatggttggtggattagtccgtttactattttaggcat 6894304  T

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Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 230 - 309
Target Start/End: Original strand, 25845682 - 25845761
Alignment:
Q  230 gtggttgaagacgaagtttatttctcttcccttcaattactatgggtggtggcttagtccatttaccattttaggcattg 309  Q
    |||||||||| ||||||||  |||||| ||||| || ||| |||| ||||||||||||||||  |||||||| |||||||    
T  25845682 gtggttgaaggcgaagtttccttctctgcccttgaactaccatggttggtggcttagtccatacaccattttgggcattg 25845761  T

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Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 214 - 307
Target Start/End: Complemental strand, 20017503 - 20017410
Alignment:
Q  214 agtcacttgtttttacgtggttgaagacgaagtttatttctcttcccttcaattactatgggtggtggcttagtccatttaccattttaggcat 307  Q
    |||| |||| || |||||||||||||| ||| ||| |||| |||||||| || ||| |||| ||||||||| |||| || |||||||| |||||    
T  20017503 agtctcttgcttatacgtggttgaagaagaaatttgtttcacttcccttaaactaccatggctggtggctttgtccgttcaccattttgggcat 20017410  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 254 - 310
Target Start/End: Complemental strand, 21408170 - 21408114
Alignment:
Q  254 tcttcccttcaattactatgggtggtggcttagtccatttaccattttaggcattgg 310  Q
    ||||||| |||||||| |||| |||||||||||||| ||| | ||| ||||||||||    
T  21408170 tcttcccctcaattaccatggttggtggcttagtccgttttctattctaggcattgg 21408114  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 254 - 314
Target Start/End: Original strand, 23050173 - 23050233
Alignment:
Q  254 tcttcccttcaattactatgggtggtggcttagtccatttaccattttaggcattggctaa 314  Q
    ||||||||| || | | |||| |||||||||||||||||||| ||  ||||||||||||||    
T  23050173 tcttcccttaaactcccatggttggtggcttagtccatttactatcctaggcattggctaa 23050233  T

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Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 298
Target Start/End: Original strand, 25408798 - 25408866
Alignment:
Q  230 gtggttgaagacgaagtttatttctcttcccttcaattactatgggtggtggcttagtccatttaccat 298  Q
    |||||||||| |||| || | |||  || ||||||||||  |||| |||||||||||||||||||||||    
T  25408798 gtggttgaaggcgaaattcacttcaatttccttcaattatcatggttggtggcttagtccatttaccat 25408866  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 298
Target Start/End: Complemental strand, 8462578 - 8462510
Alignment:
Q  230 gtggttgaagacgaagtttatttctcttcccttcaattactatgggtggtggcttagtccatttaccat 298  Q
    |||||||||| |||| |||  ||||||||||||||||||  |||| |||||||||||||  ||||||||    
T  8462578 gtggttgaaggcgaaatttgcttctcttcccttcaattatcatggttggtggcttagtctgtttaccat 8462510  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 254 - 314
Target Start/End: Original strand, 38738483 - 38738543
Alignment:
Q  254 tcttcccttcaattactatgggtggtggcttagtccatttaccattttaggcattggctaa 314  Q
    ||||||| |||||||  |||| ||||||||||| || ||||| ||||||||||||||||||    
T  38738483 tcttcccctcaattatcatggttggtggcttagcccgtttactattttaggcattggctaa 38738543  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 327
Target Start/End: Original strand, 5751999 - 5752112
Alignment:
Q  214 agtcacttgtttttacgtggttgaagacgaagtttatttctcttcccttcaattactatgggtggtggcttagtccatttaccattttaggcattggcta 313  Q
    |||| ||||| ||||||||||||||| |||||| |   ||||||||| |||||||  |||| |||| ||||||  | || |||||||| ||||| | | |    
T  5751999 agtcgcttgtctttacgtggttgaaggcgaagtattcctctcttcccctcaattatcatggctggtagcttagctcgttcaccattttgggcatagacca 5752098  T
Q  314 agagtttcttttct 327  Q
    || |||||||||||    
T  5752099 agtgtttcttttct 5752112  T

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