View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14044_low_9 (Length: 201)

Name: NF14044_low_9
Description: NF14044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14044_low_9
NF14044_low_9
[»] chr1 (5 HSPs)
chr1 (36-185)||(49611486-49611636)
chr1 (43-143)||(32538436-32538536)
chr1 (123-164)||(8561750-8561791)
chr1 (86-143)||(38469262-38469319)
chr1 (136-164)||(43737722-43737750)
[»] chr3 (7 HSPs)
chr3 (36-157)||(38741263-38741385)
chr3 (36-157)||(46719661-46719783)
chr3 (39-143)||(26837126-26837230)
chr3 (39-114)||(37999508-37999583)
chr3 (91-143)||(26006760-26006812)
chr3 (12-44)||(46719787-46719819)
chr3 (48-92)||(46739682-46739726)
[»] chr4 (18 HSPs)
chr4 (36-156)||(52758636-52758757)
chr4 (51-150)||(12590144-12590244)
chr4 (51-150)||(11680283-11680383)
chr4 (51-150)||(11688562-11688662)
chr4 (53-157)||(31634103-31634208)
chr4 (51-150)||(25655580-25655680)
chr4 (51-150)||(46764259-46764359)
chr4 (39-143)||(39413551-39413655)
chr4 (54-114)||(49399506-49399566)
chr4 (39-123)||(3619033-3619117)
chr4 (91-143)||(6933835-6933887)
chr4 (54-98)||(53289533-53289577)
chr4 (59-106)||(47523270-47523317)
chr4 (103-156)||(31634812-31634866)
chr4 (111-157)||(55864259-55864305)
chr4 (123-152)||(25370511-25370540)
chr4 (111-143)||(52748808-52748840)
chr4 (51-99)||(54007631-54007679)
[»] chr8 (9 HSPs)
chr8 (53-158)||(41092171-41092277)
chr8 (54-155)||(41348146-41348248)
chr8 (54-158)||(35759183-35759288)
chr8 (39-114)||(42111558-42111633)
chr8 (39-130)||(36935659-36935750)
chr8 (39-114)||(30272142-30272217)
chr8 (39-130)||(42573607-42573698)
chr8 (51-130)||(35387407-35387485)
chr8 (125-157)||(41348949-41348981)
[»] chr6 (5 HSPs)
chr6 (48-150)||(930930-931034)
chr6 (39-150)||(10608249-10608361)
chr6 (39-139)||(18605020-18605120)
chr6 (54-150)||(1034728-1034825)
chr6 (39-111)||(28534812-28534884)
[»] chr7 (13 HSPs)
chr7 (53-157)||(29314581-29314686)
chr7 (53-157)||(41224786-41224891)
chr7 (39-143)||(33687679-33687783)
chr7 (54-157)||(44896046-44896150)
chr7 (42-157)||(29006347-29006463)
chr7 (87-157)||(29007176-29007247)
chr7 (122-157)||(42455863-42455898)
chr7 (111-157)||(4984809-4984855)
chr7 (123-157)||(45887994-45888028)
chr7 (123-157)||(47331967-47332001)
chr7 (123-161)||(48259242-48259280)
chr7 (127-164)||(24322369-24322406)
chr7 (103-163)||(29315304-29315365)
[»] scaffold0155 (1 HSPs)
scaffold0155 (53-159)||(17337-17444)
[»] chr2 (15 HSPs)
chr2 (53-159)||(16426551-16426658)
chr2 (61-157)||(40992222-40992319)
chr2 (48-150)||(29921474-29921572)
chr2 (39-133)||(5006237-5006331)
chr2 (111-157)||(41043329-41043376)
chr2 (102-143)||(30899894-30899935)
chr2 (86-143)||(37996560-37996617)
chr2 (124-157)||(41984727-41984760)
chr2 (91-143)||(6609565-6609617)
chr2 (87-143)||(6610021-6610077)
chr2 (91-143)||(7994069-7994121)
chr2 (91-143)||(7994555-7994607)
chr2 (87-143)||(15562018-15562074)
chr2 (91-143)||(16903412-16903464)
chr2 (59-99)||(36476696-36476736)
[»] scaffold0180 (1 HSPs)
scaffold0180 (48-157)||(23030-23140)
[»] chr5 (6 HSPs)
chr5 (52-143)||(42654851-42654941)
chr5 (103-159)||(16971026-16971083)
chr5 (123-157)||(2319266-2319300)
chr5 (123-157)||(2319981-2320015)
chr5 (111-143)||(461200-461232)
chr5 (87-143)||(8320889-8320945)
[»] scaffold0069 (1 HSPs)
scaffold0069 (39-130)||(1867-1958)
[»] scaffold0022 (1 HSPs)
scaffold0022 (91-143)||(61588-61640)


Alignment Details
Target: chr1 (Bit Score: 123; Significance: 2e-63; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 36 - 185
Target Start/End: Original strand, 49611486 - 49611636
Alignment:
Q  36 gtggtggaaaatatttagtgttgagagaccatggtaaaattgtgttccctatttaatctaatggccaaaaactaactttttcatgat-ggaaaaaactag 134  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||  |||||| ||||||||||||    
T  49611486 gtggtggaaaatatttagtgttgagagaccatggtaaaattgtgttccctatttaatctaatggccaaaaactaattttcccatgatgggaaaaaactag 49611585  T
Q  135 cctttcccaaattaaatggcaccatcttttatggttatcttacgtctgggt 185  Q
    |||||||||||||||||||||| |||||||||||||||||||||| |||||    
T  49611586 cctttcccaaattaaatggcactatcttttatggttatcttacgtgtgggt 49611636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 43 - 143
Target Start/End: Original strand, 32538436 - 32538536
Alignment:
Q  43 aaaatatttagtgttgagagaccatggtaaaattgtgttccctatttaatctaatggccaaaaactaactttttcatgatggaaaaaactagcctttccc 142  Q
    |||| ||||||||||||||||||||| ||| ||| ||||||||| |||||  |||||  |||||||||||||| |||| ||| ||||| |||||||||||    
T  32538436 aaaaaatttagtgttgagagaccatgataacattatgttccctacttaattcaatggttaaaaactaacttttccatggtgggaaaaattagcctttccc 32538535  T
Q  143 a 143  Q
    |    
T  32538536 a 32538536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 123 - 164
Target Start/End: Original strand, 8561750 - 8561791
Alignment:
Q  123 ggaaaaaactagcctttcccaaattaaatggcaccatctttt 164  Q
    |||||||||||| ||||||||||||||||| |||| ||||||    
T  8561750 ggaaaaaactagtctttcccaaattaaatgtcaccttctttt 8561791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 86 - 143
Target Start/End: Original strand, 38469262 - 38469319
Alignment:
Q  86 atttaatctaatggccaaaaactaactttttcatgatggaaaaaactagcctttccca 143  Q
    |||| |||||||||  |||||||||||||  |||| ||||||||| ||||||||||||    
T  38469262 atttgatctaatggttaaaaactaactttcccatggtggaaaaaattagcctttccca 38469319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 164
Target Start/End: Complemental strand, 43737750 - 43737722
Alignment:
Q  136 ctttcccaaattaaatggcaccatctttt 164  Q
    |||||||||||||||||||||||||||||    
T  43737750 ctttcccaaattaaatggcaccatctttt 43737722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 95; Significance: 1e-46; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 36 - 157
Target Start/End: Complemental strand, 38741385 - 38741263
Alignment:
Q  36 gtggtggaaaatatttagtgttgagagaccatggtaaaattgtgttccctatttaatctaatggccaaaaactaactttttcatgatg-gaaaaaactag 134  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||| |||||||||||    
T  38741385 gtggtggaaaatatttagtgttgagagaccatggtaaaattgtgttccctatttaatctaatggccaaaaactaactttcctttgatgagaaaaaactag 38741286  T
Q  135 cctttcccaaattaaatggcacc 157  Q
    || ||||||||||||||||||||    
T  38741285 ccattcccaaattaaatggcacc 38741263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 36 - 157
Target Start/End: Complemental strand, 46719783 - 46719661
Alignment:
Q  36 gtggtggaaaatatttagtgttgagagaccatggtaaaattgtgttccctatttaatctaatggccaaaaactaactttttcatgatg-gaaaaaactag 134  Q
    ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| |||||||||||    
T  46719783 gtggtagaaaatatttaatgttgagagaccatggtaaaattgtgttccctatttaatctaatggccaaaaactaactttcccatgatgagaaaaaactag 46719684  T
Q  135 cctttcccaaattaaatggcacc 157  Q
    | |||||||||||||||||||||    
T  46719683 catttcccaaattaaatggcacc 46719661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 39 - 143
Target Start/End: Original strand, 26837126 - 26837230
Alignment:
Q  39 gtggaaaatatttagtgttgagagaccatggtaaaattgtgttccctatttaatctaatggccaaaaactaactttttcatgatggaaaaaactagcctt 138  Q
    |||||||| ||| ||||||||||||||||||||||||| ||||||||| |||||  |||||  ||||||||| |||  |||| ||| | |||| ||||||    
T  26837126 gtggaaaaaattgagtgttgagagaccatggtaaaattttgttccctacttaattcaatggttaaaaactaattttcccatggtgggataaacaagcctt 26837225  T
Q  139 tccca 143  Q
    |||||    
T  26837226 tccca 26837230  T

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Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 39 - 114
Target Start/End: Complemental strand, 37999583 - 37999508
Alignment:
Q  39 gtggaaaatatttagtgttgagagaccatggtaaaattgtgttccctatttaatctaatggccaaaaactaacttt 114  Q
    |||||||| ||| |||||||||||| |||||||||||| ||||||||| |||||  |||||  |||||||||||||    
T  37999583 gtggaaaaaattgagtgttgagagatcatggtaaaattttgttccctacttaattcaatggttaaaaactaacttt 37999508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 91 - 143
Target Start/End: Original strand, 26006760 - 26006812
Alignment:
Q  91 atctaatggccaaaaactaactttttcatgatggaaaaaactagcctttccca 143  Q
    ||||||||| |||||||||||||| ||||||||| ||||| ||||||||||||    
T  26006760 atctaatggtcaaaaactaactttctcatgatgggaaaaattagcctttccca 26006812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 44
Target Start/End: Complemental strand, 46719819 - 46719787
Alignment:
Q  12 aagcaaaggtgggggagaagagtggtggtggaa 44  Q
    |||||||||||||||||||||||||||||||||    
T  46719819 aagcaaaggtgggggagaagagtggtggtggaa 46719787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 92
Target Start/End: Complemental strand, 46739726 - 46739682
Alignment:
Q  48 atttagtgttgagagaccatggtaaaattgtgttccctatttaat 92  Q
    ||||||||||||||||||||| | ||||| |||||||||||||||    
T  46739726 atttagtgttgagagaccatgatgaaattatgttccctatttaat 46739682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 94; Significance: 4e-46; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 36 - 156
Target Start/End: Original strand, 52758636 - 52758757
Alignment:
Q  36 gtggtggaaaatatttagtgttgagagaccatggtaaaattgtgttccctatttaatctaatggccaaaaactaactttttcatgatg-gaaaaaactag 134  Q
    ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| |||||||||||    
T  52758636 gtggtggaaaatatttaatgttgagagactatggtaaaattgtgttccctatttaatctaatggccaaaaactaactttcccatgatgagaaaaaactag 52758735  T
Q  135 cctttcccaaattaaatggcac 156  Q
    | ||||||||||||||||||||    
T  52758736 catttcccaaattaaatggcac 52758757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 51 - 150
Target Start/End: Original strand, 12590144 - 12590244
Alignment:
Q  51 tagtgttgagagaccatggtaaaattgtgttccctatttaatctaatggccaaaaactaactttttcatgatgg-aaaaaactagcctttcccaaattaa 149  Q
    ||||| |||||||||||  ||| |||||||||||||||||||||||||| ||||||||||||||  |||| ||| |||||||||||||||||||||||||    
T  12590144 tagtgctgagagaccataataacattgtgttccctatttaatctaatggtcaaaaactaactttcccatggtggaaaaaaactagcctttcccaaattaa 12590243  T
Q  150 a 150  Q
    |    
T  12590244 a 12590244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 51 - 150
Target Start/End: Complemental strand, 11680383 - 11680283
Alignment:
Q  51 tagtgttgagagaccatggtaaaattgtgttccctatttaatctaatggccaaaaactaactttttcatgat-ggaaaaaactagcctttcccaaattaa 149  Q
    ||||| |||||||||||  ||| |||||||||||||||||||||||||| ||||||||||||||  |||| | ||||||||||| |||||||||||||||    
T  11680383 tagtgctgagagaccataataacattgtgttccctatttaatctaatggtcaaaaactaactttcccatggtgggaaaaaactaacctttcccaaattaa 11680284  T
Q  150 a 150  Q
    |    
T  11680283 a 11680283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 51 - 150
Target Start/End: Complemental strand, 11688662 - 11688562
Alignment:
Q  51 tagtgttgagagaccatggtaaaattgtgttccctatttaatctaatggccaaaaactaactttttcatgat-ggaaaaaactagcctttcccaaattaa 149  Q
    ||||| |||||||||||  ||| |||||||||||||||||||||||||| ||||||||||||||  |||| | ||||||||||| |||||||||||||||    
T  11688662 tagtgctgagagaccataataacattgtgttccctatttaatctaatggtcaaaaactaactttcccatggtgggaaaaaactaacctttcccaaattaa 11688563  T
Q  150 a 150  Q
    |    
T  11688562 a 11688562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 53 - 157
Target Start/End: Complemental strand, 31634208 - 31634103
Alignment:
Q  53 gtgttgagagaccatggtaaaattgtgttccctatttaatctaatggccaaaaactaactttttcatgatggaaaaaact-agcctttcccaaattaaat 151  Q
    ||||||| |||||||| |||||||||||||||||||||||| |||||  |||||||||||||  |||| | ||||||| | |||||||| ||||||||||    
T  31634208 gtgttgaaagaccatgataaaattgtgttccctatttaatcaaatggttaaaaactaactttcccatggtagaaaaaaataagcctttcgcaaattaaat 31634109  T
Q  152 ggcacc 157  Q
    ||||||    
T  31634108 ggcacc 31634103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 51 - 150
Target Start/End: Original strand, 25655580 - 25655680
Alignment:
Q  51 tagtgttgagagaccatggtaaaattgtgttccctatttaatctaatggccaaaaactaactttttcatgat-ggaaaaaactagcctttcccaaattaa 149  Q
    ||||| |||||||||||  ||| |||||||| ||||||||||||||||| ||||||||||||||  |||| | |||||||||||| ||||||||||||||    
T  25655580 tagtgctgagagaccataataacattgtgtttcctatttaatctaatggtcaaaaactaactttcccatggtgggaaaaaactagtctttcccaaattaa 25655679  T
Q  150 a 150  Q
    |    
T  25655680 a 25655680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 51 - 150
Target Start/End: Complemental strand, 46764359 - 46764259
Alignment:
Q  51 tagtgttgagagaccatggtaaaattgtgttccctatttaatctaatggccaaaaactaactttttcatgat-ggaaaaaactagcctttcccaaattaa 149  Q
    ||||| |||||||||||  ||| |||||||| |||||||||| |||||| ||||||||||||||  |||| | |||||||||||| |||| |||||||||    
T  46764359 tagtgctgagagaccataataacattgtgtttcctatttaatttaatggtcaaaaactaactttcccatggtgggaaaaaactagtcttttccaaattaa 46764260  T
Q  150 a 150  Q
    |    
T  46764259 a 46764259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 39 - 143
Target Start/End: Original strand, 39413551 - 39413655
Alignment:
Q  39 gtggaaaatatttagtgttgagagaccatggtaaaattgtgttccctatttaatctaatggccaaaaactaactttttcatgatggaaaaaactagcctt 138  Q
    |||||||| ||||||||| ||||||||||| ||||||| ||||| ||| |||||| |||||  |||||||||||||   ||| ||| ||||| ||| |||    
T  39413551 gtggaaaaaatttagtgtcgagagaccatgataaaattatgttctctacttaatccaatggttaaaaactaactttcctatggtgggaaaaattagtctt 39413650  T
Q  139 tccca 143  Q
    |||||    
T  39413651 tccca 39413655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 54 - 114
Target Start/End: Original strand, 49399506 - 49399566
Alignment:
Q  54 tgttgagagaccatggtaaaattgtgttccctatttaatctaatggccaaaaactaacttt 114  Q
    ||||||||||||||| ||||||||| | ||||||||||||||||||  |||||||||||||    
T  49399506 tgttgagagaccatgataaaattgtataccctatttaatctaatggttaaaaactaacttt 49399566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 123
Target Start/End: Complemental strand, 3619117 - 3619033
Alignment:
Q  39 gtggaaaatatttagtgttgagagaccatggtaaaattgtgttccctatttaatctaatggccaaaaactaactttttcatgatg 123  Q
    |||| ||| ||||| |||||||||| |||| |||||||||||  ||||||||||||||| |  ||||  ||||||||| ||||||    
T  3619117 gtgggaaaaatttaatgttgagagatcatgataaaattgtgtatcctatttaatctaatagttaaaacttaacttttttatgatg 3619033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 143
Target Start/End: Complemental strand, 6933887 - 6933835
Alignment:
Q  91 atctaatggccaaaaactaactttttcatgatggaaaaaactagcctttccca 143  Q
    |||||||||  |||||||||||||| |||||||||||||| ||| ||||||||    
T  6933887 atctaatggttaaaaactaacttttccatgatggaaaaaattagtctttccca 6933835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 98
Target Start/End: Complemental strand, 53289577 - 53289533
Alignment:
Q  54 tgttgagagaccatggtaaaattgtgttccctatttaatctaatg 98  Q
    |||| |||||||||| ||||||||||| |||||||||||||||||    
T  53289577 tgttcagagaccatgataaaattgtgtaccctatttaatctaatg 53289533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 59 - 106
Target Start/End: Complemental strand, 47523317 - 47523270
Alignment:
Q  59 agagaccatggtaaaattgtgttccctatttaatctaatggccaaaaa 106  Q
    |||||| ||| |||||||||||||| ||||||||||||||| ||||||    
T  47523317 agagactatgataaaattgtgttccttatttaatctaatggtcaaaaa 47523270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 156
Target Start/End: Original strand, 31634812 - 31634866
Alignment:
Q  103 aaaactaactttttcatgatggaaaaaa-ctagcctttcccaaattaaatggcac 156  Q
    |||||| |||||| |||||||||||||| |||| ||||| |||||||||||||||    
T  31634812 aaaacttacttttccatgatggaaaaaaactagtctttctcaaattaaatggcac 31634866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 157
Target Start/End: Complemental strand, 55864305 - 55864259
Alignment:
Q  111 ctttttcatgatggaaaaaactagcctttcccaaattaaatggcacc 157  Q
    ||||||||| |||| |||||||||| |||||||||||||||| ||||    
T  55864305 ctttttcattatgggaaaaactagcatttcccaaattaaatgtcacc 55864259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 123 - 152
Target Start/End: Complemental strand, 25370540 - 25370511
Alignment:
Q  123 ggaaaaaactagcctttcccaaattaaatg 152  Q
    ||||||||||||||||||||||||||||||    
T  25370540 ggaaaaaactagcctttcccaaattaaatg 25370511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 143
Target Start/End: Complemental strand, 52748840 - 52748808
Alignment:
Q  111 ctttttcatgatggaaaaaactagcctttccca 143  Q
    |||||||||||||||||||| ||||||||||||    
T  52748840 ctttttcatgatggaaaaaattagcctttccca 52748808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 99
Target Start/End: Complemental strand, 54007679 - 54007631
Alignment:
Q  51 tagtgttgagagaccatggtaaaattgtgttccctatttaatctaatgg 99  Q
    ||||| ||| |||| ||| |||||||||||||| |||||||||||||||    
T  54007679 tagtgatgaaagactatgataaaattgtgttccttatttaatctaatgg 54007631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 67; Significance: 6e-30; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 53 - 158
Target Start/End: Complemental strand, 41092277 - 41092171
Alignment:
Q  53 gtgttgagagaccatggtaaaattgtgttccctatttaatctaatggccaaaaactaactttttcatgat-ggaaaaaactagcctttcccaaattaaat 151  Q
    ||||||| |||||||| |||||||||||||||||||||||| |||||  |||||||||||||| |||| | ||||||||| |||||||||||||||||||    
T  41092277 gtgttgaaagaccatgataaaattgtgttccctatttaatcaaatggttaaaaactaacttttccatggtgggaaaaaacaagcctttcccaaattaaat 41092178  T
Q  152 ggcacca 158  Q
    |||||||    
T  41092177 ggcacca 41092171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 54 - 155
Target Start/End: Complemental strand, 41348248 - 41348146
Alignment:
Q  54 tgttgagagaccatggtaaaattgtgttccctatttaatctaatggccaaaaactaactttttcatgat-ggaaaaaactagcctttcccaaattaaatg 152  Q
    ||||||||||||||| ||||||||||| ||||||||||||||||||  |||||||||||||  |||| | || |||||||| |||||||||||||||| |    
T  41348248 tgttgagagaccatgataaaattgtgtaccctatttaatctaatggttaaaaactaactttcccatggtggggaaaaactaacctttcccaaattaaacg 41348149  T
Q  153 gca 155  Q
    |||    
T  41348148 gca 41348146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 54 - 158
Target Start/End: Original strand, 35759183 - 35759288
Alignment:
Q  54 tgttgagagaccatggtaaaattgtgttccctatttaatctaatggccaaaaactaactttttcatgat-ggaaaaaactagcctttcccaaattaaatg 152  Q
    ||||||||||||||| ||||||||||| ||||||||||||||||||  |||||||||||||  |||| | || |||||| |||||||||| ||||||| |    
T  35759183 tgttgagagaccatgataaaattgtgtaccctatttaatctaatggttaaaaactaactttcccatggtggggaaaaaccagcctttccctaattaaacg 35759282  T
Q  153 gcacca 158  Q
    ||||||    
T  35759283 gcacca 35759288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 39 - 114
Target Start/End: Complemental strand, 42111633 - 42111558
Alignment:
Q  39 gtggaaaatatttagtgttgagagaccatggtaaaattgtgttccctatttaatctaatggccaaaaactaacttt 114  Q
    |||||||| || |||||||||||||||||| ||||||| | |||||||| |||| |||||| ||||||||||||||    
T  42111633 gtggaaaaaatgtagtgttgagagaccatgataaaattatattccctatctaatttaatggtcaaaaactaacttt 42111558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 39 - 130
Target Start/End: Complemental strand, 36935750 - 36935659
Alignment:
Q  39 gtggaaaatatttagtgttgagagaccatggtaaaattgtgttccctatttaatctaatggccaaaaactaactttttcatgatggaaaaaa 130  Q
    |||||||| ||||  |||||||||| |||| ||||||||||| ||||||||||||||||    ||||| ||||||||||||| || ||||||    
T  36935750 gtggaaaaaatttgatgttgagagatcatgataaaattgtgtaccctatttaatctaattattaaaaattaactttttcatggtgaaaaaaa 36935659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 114
Target Start/End: Complemental strand, 30272217 - 30272142
Alignment:
Q  39 gtggaaaatatttagtgttgagagaccatggtaaaattgtgttccctatttaatctaatggccaaaaactaacttt 114  Q
    |||||||| ||||  |||||||||| |||  ||||||||||| ||||||||||||||||||  ||||| |||||||    
T  30272217 gtggaaaaaatttgatgttgagagatcataataaaattgtgtaccctatttaatctaatggttaaaaattaacttt 30272142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 130
Target Start/End: Complemental strand, 42573698 - 42573607
Alignment:
Q  39 gtggaaaatatttagtgttgagagaccatggtaaaattgtgttccctatttaatctaatggccaaaaactaactttttcatgatggaaaaaa 130  Q
    |||| ||| ||||| ||||||||||| ||  ||| || |||||||||||||||| |||||| |||||||||| ||| ||||| ||| |||||    
T  42573698 gtgggaaagatttaatgttgagagactataataacatcgtgttccctatttaatttaatggtcaaaaactaattttctcatggtgggaaaaa 42573607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 51 - 130
Target Start/End: Original strand, 35387407 - 35387485
Alignment:
Q  51 tagtgttgagagaccatggtaaaattgtgttccctatttaatctaatggccaaaaactaactttttcatgatggaaaaaa 130  Q
    |||| ||||||||| ||| ||||| |||||| ||||| ||||| ||||| |||||||||||||| ||| | |||||||||    
T  35387407 tagtattgagagac-atgataaaagtgtgtttcctatctaatcaaatggtcaaaaactaactttctcaaggtggaaaaaa 35387485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 157
Target Start/End: Original strand, 41348949 - 41348981
Alignment:
Q  125 aaaaaactagcctttcccaaattaaatggcacc 157  Q
    |||||||||||||||||||||||||| ||||||    
T  41348949 aaaaaactagcctttcccaaattaaacggcacc 41348981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 2e-26; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 48 - 150
Target Start/End: Complemental strand, 931034 - 930930
Alignment:
Q  48 atttagtgttgagagaccatggtaaaattgtgttccctatttaatctaatggccaaaaactaactttt-tcatgat-ggaaaaaactagcctttcccaaa 145  Q
    ||||||||||||||||||||  ||| |||||||||||||||||||||||||| |||||||||||||||  |||| | |||||||||||| ||||||||||    
T  931034 atttagtgttgagagaccataataacattgtgttccctatttaatctaatggtcaaaaactaacttttcccatggtgggaaaaaactagtctttcccaaa 930935  T
Q  146 ttaaa 150  Q
    |||||    
T  930934 ttaaa 930930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 39 - 150
Target Start/End: Original strand, 10608249 - 10608361
Alignment:
Q  39 gtggaaaatatttagtgttgagagaccatggtaaaattgtgttccctatttaatctaatggccaaaaactaactttttcatgat-ggaaaaaactagcct 137  Q
    |||||||| || ||||| |||||||||||  ||| |||||||||||||||||||||||||| ||||||||||||||  |||| | ||||||||| |||||    
T  10608249 gtggaaaagatctagtgctgagagaccataataacattgtgttccctatttaatctaatggtcaaaaactaactttcccatggtgggaaaaaaccagcct 10608348  T
Q  138 ttcccaaattaaa 150  Q
    |||||||||||||    
T  10608349 ttcccaaattaaa 10608361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 39 - 139
Target Start/End: Complemental strand, 18605120 - 18605020
Alignment:
Q  39 gtggaaaatatttagtgttgagagaccatggtaaaattgtgttccctatttaatctaatggccaaaaactaactttttcatgatggaaaaaactagcctt 138  Q
    |||||||| ||||||||||||||||||||| ||||||| ||||||||| |||||  |||||  ||||| |||||||  |||| ||||||||| |||||||    
T  18605120 gtggaaaaaatttagtgttgagagaccatgataaaattatgttccctacttaattcaatggttaaaaattaactttcccatggtggaaaaaattagcctt 18605021  T
Q  139 t 139  Q
    |    
T  18605020 t 18605020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 54 - 150
Target Start/End: Complemental strand, 1034825 - 1034728
Alignment:
Q  54 tgttgagagaccatggtaaaattgtgttccctatttaatctaatggccaaaaactaactttttcatgat-ggaaaaaactagcctttcccaaattaaa 150  Q
    |||||||||| |||| ||||||||||| ||||||||||||||||||  |||||||||||||   ||| | || |||||||| ||||||||||||||||    
T  1034825 tgttgagagatcatgataaaattgtgtaccctatttaatctaatggttaaaaactaactttcctatggtggggaaaaactaacctttcccaaattaaa 1034728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 39 - 111
Target Start/End: Complemental strand, 28534884 - 28534812
Alignment:
Q  39 gtggaaaatatttagtgttgagagaccatggtaaaattgtgttccctatttaatctaatggccaaaaactaac 111  Q
    |||||||| ||| ||||||||||||| ||||||||||| |||||||||||||||| ||| |  ||||||||||    
T  28534884 gtggaaaaaattgagtgttgagagactatggtaaaattttgttccctatttaatccaatagttaaaaactaac 28534812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 1e-24; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 53 - 157
Target Start/End: Complemental strand, 29314686 - 29314581
Alignment:
Q  53 gtgttgagagaccatggtaaaattgtgttccctatttaatctaatggccaaaaactaactttttcatgatgg-aaaaaactagcctttcccaaattaaat 151  Q
    ||||||| |||||||| |||||||||||||||||||||||| |||||  |||||||||||||  |||| ||| ||||||| |||||||| ||||||||||    
T  29314686 gtgttgaaagaccatgataaaattgtgttccctatttaatcaaatggttaaaaactaactttcccatggtggaaaaaaacaagcctttctcaaattaaat 29314587  T
Q  152 ggcacc 157  Q
    ||||||    
T  29314586 ggcacc 29314581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 53 - 157
Target Start/End: Original strand, 41224786 - 41224891
Alignment:
Q  53 gtgttgagagaccatggtaaaattgtgttccctatttaatctaatggccaaaaactaactttttcatgat-ggaaaaaactagcctttcccaaattaaat 151  Q
    ||||||| |||||||| |||||||||||||||||||||||| |||||  |||||||||||||  |||| | ||||||||  |||||||||||||||||||    
T  41224786 gtgttgaaagaccatgataaaattgtgttccctatttaatcaaatggttaaaaactaactttcccatggtgggaaaaaataagcctttcccaaattaaat 41224885  T
Q  152 ggcacc 157  Q
    ||||||    
T  41224886 ggcacc 41224891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 39 - 143
Target Start/End: Original strand, 33687679 - 33687783
Alignment:
Q  39 gtggaaaatatttagtgttgagagaccatggtaaaattgtgttccctatttaatctaatggccaaaaactaactttttcatgatggaaaaaactagcctt 138  Q
    ||||||||| |||||||||||||||||||| ||| ||| ||||||||| |||||  |||||  ||||||||||||| ||||| ||||||||| |||||||    
T  33687679 gtggaaaatttttagtgttgagagaccatgataacattatgttccctacttaattcaatggttaaaaactaactttctcatggtggaaaaaattagcctt 33687778  T
Q  139 tccca 143  Q
    |||||    
T  33687779 tccca 33687783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 54 - 157
Target Start/End: Complemental strand, 44896150 - 44896046
Alignment:
Q  54 tgttgagagaccatggtaaaattgtgttccctatttaatctaatggccaaaaactaactttttcatgat-ggaaaaaactagcctttcccaaattaaatg 152  Q
    ||||||||||||||| ||||||||||| ||||||||||||||||||  |||||||||||||  |||| | || ||||||||| ||||||||||||||| |    
T  44896150 tgttgagagaccatgataaaattgtgtaccctatttaatctaatggttaaaaactaactttcccatggtggggaaaaactagtctttcccaaattaaacg 44896051  T
Q  153 gcacc 157  Q
    |||||    
T  44896050 gcacc 44896046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 42 - 157
Target Start/End: Complemental strand, 29006463 - 29006347
Alignment:
Q  42 gaaaatatttagtgttgagagaccatggtaaaattgtgttc-cctatttaatctaatggccaaaaactaactttttcatgatgg-aaaaaactagccttt 139  Q
    ||||| || |||||| || |||||||| |||||||| || | ||| |||||||||||||  |||||||||||||  |||| ||| ||||||| |||||||    
T  29006463 gaaaaaatatagtgtggatagaccatgataaaattg-gtactcctctttaatctaatggttaaaaactaactttcccatggtgggaaaaaacaagccttt 29006365  T
Q  140 cccaaattaaatggcacc 157  Q
    ||||||||||||||||||    
T  29006364 cccaaattaaatggcacc 29006347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 87 - 157
Target Start/End: Original strand, 29007176 - 29007247
Alignment:
Q  87 tttaatctaatggccaaaaactaactttttcatgatgg-aaaaaactagcctttcccaaattaaatggcacc 157  Q
    |||||||||||||  |||||||||||||  |||| ||| ||||||| |||||||||||||||||||| ||||    
T  29007176 tttaatctaatggttaaaaactaactttcccatggtgggaaaaaacaagcctttcccaaattaaatgacacc 29007247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 122 - 157
Target Start/End: Original strand, 42455863 - 42455898
Alignment:
Q  122 tggaaaaaactagcctttcccaaattaaatggcacc 157  Q
    ||||||||||||||||||||||||||||||| ||||    
T  42455863 tggaaaaaactagcctttcccaaattaaatgccacc 42455898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 157
Target Start/End: Complemental strand, 4984855 - 4984809
Alignment:
Q  111 ctttttcatgatggaaaaaactagcctttcccaaattaaatggcacc 157  Q
    ||||| |||| |||||||||||| |||||||||||||||||| ||||    
T  4984855 cttttccatggtggaaaaaactaacctttcccaaattaaatgccacc 4984809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 157
Target Start/End: Original strand, 45887994 - 45888028
Alignment:
Q  123 ggaaaaaactagcctttcccaaattaaatggcacc 157  Q
    |||||||||||||||||||||||||||||| ||||    
T  45887994 ggaaaaaactagcctttcccaaattaaatgccacc 45888028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 157
Target Start/End: Original strand, 47331967 - 47332001
Alignment:
Q  123 ggaaaaaactagcctttcccaaattaaatggcacc 157  Q
    |||||||||||||||||||||||||||||| ||||    
T  47331967 ggaaaaaactagcctttcccaaattaaatgtcacc 47332001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 161
Target Start/End: Complemental strand, 48259280 - 48259242
Alignment:
Q  123 ggaaaaaactagcctttcccaaattaaatggcaccatct 161  Q
    |||||||||||| ||||||||||||||||| ||||||||    
T  48259280 ggaaaaaactagtctttcccaaattaaatgccaccatct 48259242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 127 - 164
Target Start/End: Original strand, 24322369 - 24322406
Alignment:
Q  127 aaaactagcctttcccaaattaaatggcaccatctttt 164  Q
    ||||||| |||||||||||||||||||||||| |||||    
T  24322369 aaaactaacctttcccaaattaaatggcaccacctttt 24322406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 103 - 163
Target Start/End: Original strand, 29315304 - 29315365
Alignment:
Q  103 aaaactaactttttcatgatgg-aaaaaactagcctttcccaaattaaatggcaccatcttt 163  Q
    |||||| |||||  |||||||| |||||||||| |||||||||||||||| ||||| |||||    
T  29315304 aaaacttactttcccatgatgggaaaaaactagtctttcccaaattaaattgcaccttcttt 29315365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 53 - 159
Target Start/End: Complemental strand, 17444 - 17337
Alignment:
Q  53 gtgttgagagaccatggtaaaattgtgttccctatttaatctaatggccaaaaactaactttttcatgat-ggaaaaaactagcctttcccaaattaaat 151  Q
    ||||||| |||||||| |||||||||||||||||||| ||| |||||  |||||||||||||  |||| | ||||||||| ||||||| |||||||||||    
T  17444 gtgttgaaagaccatgataaaattgtgttccctatttgatcaaatggttaaaaactaactttcccatggtgggaaaaaacaagccttttccaaattaaat 17345  T
Q  152 ggcaccat 159  Q
    ||||||||    
T  17344 ggcaccat 17337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 2e-23; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 53 - 159
Target Start/End: Complemental strand, 16426658 - 16426551
Alignment:
Q  53 gtgttgagagaccatggtaaaattgtgttccctatttaatctaatggccaaaaactaactttttcatgatgg-aaaaaactagcctttcccaaattaaat 151  Q
    ||||||| |||||||| ||||||||| ||||||| |||||| |||||  ||||| |||||||| |||| ||| ||||||| |||||||||||||||||||    
T  16426658 gtgttgaaagaccatgataaaattgtattccctacttaatcaaatggttaaaaattaacttttccatggtgggaaaaaacaagcctttcccaaattaaat 16426559  T
Q  152 ggcaccat 159  Q
    ||||||||    
T  16426558 ggcaccat 16426551  T

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Target: chr2; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 61 - 157
Target Start/End: Complemental strand, 40992319 - 40992222
Alignment:
Q  61 agaccatggtaaaattgtgttccctatttaatctaatggccaaaaactaactttttcatgat-ggaaaaaactagcctttcccaaattaaatggcacc 157  Q
    |||||||| |||||||||||||||||||||||| |||||  |||||||||||||  |||| | ||||||||| | |||||||||||||||||||||||    
T  40992319 agaccatgataaaattgtgttccctatttaatcaaatggttaaaaactaactttcccatggtaggaaaaaacaaacctttcccaaattaaatggcacc 40992222  T

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Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 48 - 150
Target Start/End: Original strand, 29921474 - 29921572
Alignment:
Q  48 atttagtgttgagagaccatggtaaaattgtgttccctatttaatctaatggccaaaaactaactttttcatgatggaaaaaactagcctttcccaaatt 147  Q
    ||||| ||||||||||||||  ||||||||||| ||||||||||| ||||||  ||||||||||||| |||    || |||||||| |||| ||||||||    
T  29921474 atttaatgttgagagaccattataaaattgtgtaccctatttaatttaatggttaaaaactaactttctca----gggaaaaactaaccttacccaaatt 29921569  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 39 - 133
Target Start/End: Original strand, 5006237 - 5006331
Alignment:
Q  39 gtggaaaatatttagtgttgagagaccatggtaaaattgtgttccctatttaatctaatggccaaaaactaactttttcatgatggaaaaaacta 133  Q
    |||||||| ||| ||||||||||||| ||||||||||| ||||||||| |||||  ||||   ||||| ||||||| ||||| ||| || |||||    
T  5006237 gtggaaaaaattaagtgttgagagacaatggtaaaattttgttccctacttaattcaatgattaaaaagtaactttctcatggtgggaataacta 5006331  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 111 - 157
Target Start/End: Original strand, 41043329 - 41043376
Alignment:
Q  111 ctttttcatgatgg-aaaaaactagcctttcccaaattaaatggcacc 157  Q
    ||||| |||||||| |||||||||||||||||||||||||||| ||||    
T  41043329 cttttccatgatgggaaaaaactagcctttcccaaattaaatgccacc 41043376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 102 - 143
Target Start/End: Original strand, 30899894 - 30899935
Alignment:
Q  102 aaaaactaactttttcatgatggaaaaaactagcctttccca 143  Q
    ||||||||||||||||||| ||| ||||| ||||||||||||    
T  30899894 aaaaactaactttttcatggtgggaaaaattagcctttccca 30899935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 86 - 143
Target Start/End: Original strand, 37996560 - 37996617
Alignment:
Q  86 atttaatctaatggccaaaaactaactttttcatgatggaaaaaactagcctttccca 143  Q
    |||| |||||||||  |||||||||||||  |||||||| ||||| ||||||||||||    
T  37996560 atttgatctaatggttaaaaactaactttcccatgatgggaaaaattagcctttccca 37996617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 124 - 157
Target Start/End: Complemental strand, 41984760 - 41984727
Alignment:
Q  124 gaaaaaactagcctttcccaaattaaatggcacc 157  Q
    ||||||||||||||||||||||||||||| ||||    
T  41984760 gaaaaaactagcctttcccaaattaaatgccacc 41984727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 143
Target Start/End: Complemental strand, 6609617 - 6609565
Alignment:
Q  91 atctaatggccaaaaactaactttttcatgatggaaaaaactagcctttccca 143  Q
    |||||||||  |||||||||||||| |||| ||| ||||| ||||||||||||    
T  6609617 atctaatggttaaaaactaacttttccatggtgggaaaaattagcctttccca 6609565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 143
Target Start/End: Original strand, 6610021 - 6610077
Alignment:
Q  87 tttaatctaatggccaaaaactaactttttcatgatggaaaaaactagcctttccca 143  Q
    |||||||||||||  |||||||||||||  |||| ||| ||||| ||||||||||||    
T  6610021 tttaatctaatggttaaaaactaactttcccatggtgggaaaaattagcctttccca 6610077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 143
Target Start/End: Complemental strand, 7994121 - 7994069
Alignment:
Q  91 atctaatggccaaaaactaactttttcatgatggaaaaaactagcctttccca 143  Q
    |||||||||  |||||||||||||  |||||||| ||||| ||||||||||||    
T  7994121 atctaatggttaaaaactaactttcccatgatgggaaaaattagcctttccca 7994069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 143
Target Start/End: Original strand, 7994555 - 7994607
Alignment:
Q  91 atctaatggccaaaaactaactttttcatgatggaaaaaactagcctttccca 143  Q
    |||||||||  |||||||||||||  |||| ||||||||| ||||||||||||    
T  7994555 atctaatggttaaaaactaactttcccatggtggaaaaaattagcctttccca 7994607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 143
Target Start/End: Original strand, 15562018 - 15562074
Alignment:
Q  87 tttaatctaatggccaaaaactaactttttcatgatggaaaaaactagcctttccca 143  Q
    |||||||||||||  |||||||||||||  |||| ||| ||||| ||||||||||||    
T  15562018 tttaatctaatggttaaaaactaactttcccatggtgggaaaaattagcctttccca 15562074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 143
Target Start/End: Complemental strand, 16903464 - 16903412
Alignment:
Q  91 atctaatggccaaaaactaactttttcatgatggaaaaaactagcctttccca 143  Q
    |||||||||  |||||||||||||| |||| ||| ||||| ||||||||||||    
T  16903464 atctaatggttaaaaactaacttttccatggtgggaaaaattagcctttccca 16903412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 99
Target Start/End: Original strand, 36476696 - 36476736
Alignment:
Q  59 agagaccatggtaaaattgtgttccctatttaatctaatgg 99  Q
    |||||| ||| |||||||||||||| |||||||||||||||    
T  36476696 agagactatgataaaattgtgttccttatttaatctaatgg 36476736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0180 (Bit Score: 55; Significance: 8e-23; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 48 - 157
Target Start/End: Original strand, 23030 - 23140
Alignment:
Q  48 atttagtgttgagagaccatggtaaaattgtgttccctatttaatctaatggccaaaaactaactttttcatgat-ggaaaaaactagcctttcccaaat 146  Q
    ||||||||||||||||||||| ||||||| ||||||||||||||||||||||   ||||||||||||  |||||| |||||||||||| | ||||||       
T  23030 atttagtgttgagagaccatgataaaattatgttccctatttaatctaatggttcaaaactaactttcccatgatgggaaaaaactagacattcccaggc 23129  T
Q  147 taaatggcacc 157  Q
    |||||||||||    
T  23130 taaatggcacc 23140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 5e-21; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 52 - 143
Target Start/End: Complemental strand, 42654941 - 42654851
Alignment:
Q  52 agtgttgagagaccatggtaaaattgtgttccctatttaatctaatggccaaaaactaactttttcatgatggaaaaaactagcctttccca 143  Q
    ||||||||||||||||||||||||| ||||||||| |||||| |||||  |||||||||||||  |||| ||| ||||||||||||||||||    
T  42654941 agtgttgagagaccatggtaaaattttgttccctacttaatccaatggttaaaaactaactttcccatggtgg-aaaaactagcctttccca 42654851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 103 - 159
Target Start/End: Original strand, 16971026 - 16971083
Alignment:
Q  103 aaaactaactttttcatgatgg-aaaaaactagcctttcccaaattaaatggcaccat 159  Q
    |||||| |||||  |||||||| |||||||||| ||||||||||||||||||||||||    
T  16971026 aaaacttactttcccatgatgggaaaaaactagtctttcccaaattaaatggcaccat 16971083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 157
Target Start/End: Complemental strand, 2319300 - 2319266
Alignment:
Q  123 ggaaaaaactagcctttcccaaattaaatggcacc 157  Q
    |||||||||||||||||||||||||||||| ||||    
T  2319300 ggaaaaaactagcctttcccaaattaaatgccacc 2319266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 157
Target Start/End: Original strand, 2319981 - 2320015
Alignment:
Q  123 ggaaaaaactagcctttcccaaattaaatggcacc 157  Q
    |||||||||||||||||||||||||||||| ||||    
T  2319981 ggaaaaaactagcctttcccaaattaaatgccacc 2320015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 143
Target Start/End: Complemental strand, 461232 - 461200
Alignment:
Q  111 ctttttcatgatggaaaaaactagcctttccca 143  Q
    |||||||||| ||||||||||||||||||||||    
T  461232 ctttttcatggtggaaaaaactagcctttccca 461200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 143
Target Start/End: Complemental strand, 8320945 - 8320889
Alignment:
Q  87 tttaatctaatggccaaaaactaactttttcatgatggaaaaaactagcctttccca 143  Q
    |||||||||||||  |||||||||||||  |||| ||| ||||| ||||||||||||    
T  8320945 tttaatctaatggttaaaaactaactttcccatggtgggaaaaattagcctttccca 8320889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 39 - 130
Target Start/End: Original strand, 1867 - 1958
Alignment:
Q  39 gtggaaaatatttagtgttgagagaccatggtaaaattgtgttccctatttaatctaatggccaaaaactaactttttcatgatggaaaaaa 130  Q
    |||| ||||||||||||||||||||| ||  ||| || |||||| ||||||||| |||| | |||||||||| ||||||||| ||| |||||    
T  1867 gtgggaaatatttagtgttgagagactataataacatcgtgttctctatttaatttaatagtcaaaaactaattttttcatgctgggaaaaa 1958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 143
Target Start/End: Complemental strand, 61640 - 61588
Alignment:
Q  91 atctaatggccaaaaactaactttttcatgatggaaaaaactagcctttccca 143  Q
    ||||||||| ||||||||||||||  |||||||| ||||| ||||||||||||    
T  61640 atctaatggtcaaaaactaactttcccatgatgggaaaaattagcctttccca 61588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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