View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14045_high_2 (Length: 605)

Name: NF14045_high_2
Description: NF14045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14045_high_2
NF14045_high_2
[»] chr2 (9 HSPs)
chr2 (28-506)||(29863189-29863668)
chr2 (21-479)||(29847921-29848374)
chr2 (201-360)||(9510081-9510241)
chr2 (201-360)||(18655082-18655242)
chr2 (201-360)||(45018214-45018374)
chr2 (272-360)||(24992516-24992604)
chr2 (204-360)||(27166300-27166457)
chr2 (205-350)||(22906019-22906165)
chr2 (107-171)||(1794635-1794699)
[»] chr7 (14 HSPs)
chr7 (59-139)||(16758574-16758654)
chr7 (201-360)||(16138501-16138661)
chr7 (272-360)||(610195-610283)
chr7 (201-360)||(5388232-5388392)
chr7 (201-360)||(6538341-6538501)
chr7 (201-360)||(8504913-8505073)
chr7 (201-360)||(9541557-9541717)
chr7 (201-360)||(26354616-26354776)
chr7 (201-360)||(32102244-32102404)
chr7 (201-360)||(46500978-46501138)
chr7 (50-348)||(14640985-14641283)
chr7 (284-360)||(44901163-44901239)
chr7 (201-315)||(44901266-44901381)
chr7 (284-360)||(15178997-15179073)
[»] chr5 (14 HSPs)
chr5 (20-171)||(23914985-23915130)
chr5 (272-360)||(724933-725021)
chr5 (201-360)||(18383604-18383764)
chr5 (201-360)||(26198642-26198802)
chr5 (201-360)||(27416012-27416172)
chr5 (201-360)||(33943184-33943344)
chr5 (272-370)||(18711448-18711547)
chr5 (49-165)||(22454045-22454161)
chr5 (204-360)||(20951725-20951882)
chr5 (272-370)||(15327222-15327321)
chr5 (284-339)||(19382180-19382235)
chr5 (107-360)||(24416090-24416344)
chr5 (107-360)||(30450864-30451117)
chr5 (107-171)||(5604250-5604314)
[»] chr3 (8 HSPs)
chr3 (194-360)||(6426171-6426338)
chr3 (201-360)||(8976710-8976870)
chr3 (201-360)||(9540999-9541159)
chr3 (201-360)||(16405473-16405633)
chr3 (272-360)||(19688260-19688348)
chr3 (272-360)||(25507799-25507887)
chr3 (107-171)||(4363313-4363377)
chr3 (284-360)||(28361130-28361206)
[»] scaffold0254 (1 HSPs)
scaffold0254 (201-360)||(14296-14456)
[»] scaffold0096 (1 HSPs)
scaffold0096 (272-360)||(52478-52566)
[»] chr8 (6 HSPs)
chr8 (201-360)||(21209287-21209447)
chr8 (201-360)||(14888006-14888166)
chr8 (284-360)||(22834602-22834678)
chr8 (49-350)||(33598101-33598402)
chr8 (272-357)||(45495663-45495748)
chr8 (284-360)||(20747882-20747958)
[»] chr6 (9 HSPs)
chr6 (272-360)||(8998309-8998397)
chr6 (201-360)||(16901810-16901970)
chr6 (201-360)||(18163929-18164089)
chr6 (201-360)||(24928482-24928642)
chr6 (201-360)||(31360683-31360843)
chr6 (272-354)||(9007484-9007566)
chr6 (272-370)||(11377249-11377347)
chr6 (257-360)||(27747424-27747527)
chr6 (284-349)||(29563207-29563272)
[»] chr4 (8 HSPs)
chr4 (272-360)||(115611-115699)
chr4 (201-360)||(6696082-6696242)
chr4 (52-158)||(17133018-17133124)
chr4 (107-360)||(54696048-54696301)
chr4 (272-357)||(14935764-14935849)
chr4 (201-360)||(16268920-16269080)
chr4 (204-360)||(17155280-17155437)
chr4 (107-171)||(18127209-18127273)
[»] chr1 (1 HSPs)
chr1 (201-360)||(16158747-16158907)
[»] scaffold0021 (1 HSPs)
scaffold0021 (219-360)||(166741-166882)
[»] scaffold0028 (2 HSPs)
scaffold0028 (272-360)||(85284-85372)
scaffold0028 (107-360)||(100562-100815)
[»] scaffold0003 (1 HSPs)
scaffold0003 (201-350)||(148887-149037)
[»] scaffold0611 (1 HSPs)
scaffold0611 (201-360)||(1813-1973)
[»] scaffold0500 (1 HSPs)
scaffold0500 (272-360)||(9406-9494)
[»] scaffold0049 (2 HSPs)
scaffold0049 (257-360)||(18451-18554)
scaffold0049 (284-357)||(84989-85062)
[»] scaffold0142 (1 HSPs)
scaffold0142 (287-360)||(33309-33382)
[»] scaffold0141 (1 HSPs)
scaffold0141 (284-357)||(29750-29823)
[»] scaffold0313 (1 HSPs)
scaffold0313 (204-350)||(13431-13578)
[»] scaffold0058 (1 HSPs)
scaffold0058 (201-303)||(62691-62794)


Alignment Details
Target: chr2 (Bit Score: 407; Significance: 0; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 28 - 506
Target Start/End: Original strand, 29863189 - 29863668
Alignment:
Q  28 tgtggtagtagagtagccaaggaagattcccttgtctgaccttgagtcaaatttttcaaggttgtccttatgattaaggatataacaataacacccaaaa 127  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||    
T  29863189 tgtggtagtaaagtagccaaggaagattcccttgtctgaccttgagtcaaattttccaaggttgtccttatgattaaggatataacaataccacccaaaa 29863288  T
Q  128 atatggcaataagaaatatttgattttctatttttccatagttcgattgaagttttgttaaaaattctttttaatagaaactctactcagaatatagcaa 227  Q
    |||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |||||||||||||||||||||||| ||||||||||    
T  29863289 atatggcaataagaaatatttgattttctatttttccaaagttcgaatgaagttttgttaaaaaatctttttaatagaaactctactcaaaatatagcaa 29863388  T
Q  228 gaaatgttaatggtttctgtcaaaaagta-ttttcaacgttggcctcatttaaaagagttctagccatttcttgcaatgttatatttttctttttaacaa 326  Q
    ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29863389 gaaatgttaatggtttctgtcaaaaagtatttttcaacattggcctcatttaaaagagttctagccatttcttgcaatgttatatttttctttttaacaa 29863488  T
Q  327 cttcattttgttgaggtgttcttggacaggaaaattataagagacatcattctcatnnnnnnntatatcttgaaccattcattttaaaattcctctccat 426  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||    
T  29863489 cttcattttgttgaggtgttcttggacgggaaaattataagagacatcattctcataaaaaaatatatcttgaaccattcattttaaaattcctctccat 29863588  T
Q  427 gatcatttctcactgagatgatctatatagatatttctcattatgaattctttgtttgaagaaaataacccatgtgaatc 506  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||    
T  29863589 gatcatttctcactgagatgatctatatagatatttctcattctgaattctttgtttgaagaagataacccatgtgaatc 29863668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 21 - 479
Target Start/End: Original strand, 29847921 - 29848374
Alignment:
Q  21 atgcctttgtggtagtagagtagccaaggaagattcccttgtctgaccttgagtcaaatttttcaaggttgtccttatgattaaggatataacaataaca 120  Q
    |||||||||| |||||| |||||||||||||||||||||||||||| | ||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  29847921 atgcctttgtcgtagtaaagtagccaaggaagattcccttgtctgatcgtgagtcaaatttttcaatgttgtccttatgattaaggatataacaataaca 29848020  T
Q  121 cccaaaaatatggcaataagaaatatttgattttctatttttccatagttcgattgaagttttgttaaaaattctttttaatagaaactctactcagaat 220  Q
    ||||||||||||||||||||||||||||| ||||||||||||||| ||||| | |||||||||   ||||| | ||| |||| |||||||||||||||||    
T  29848021 cccaaaaatatggcaataagaaatatttggttttctatttttccaaagttccaatgaagtttttaaaaaaaatatttctaattgaaactctactcagaat 29848120  T
Q  221 atagcaagaaatgttaatggtttctgtcaaaaagta-ttttcaacgttggcctcatttaaaagagttctagccatttcttgcaatgttatatttttcttt 319  Q
    ||||||||||||||| || |||   | | ||||||| ||||||||  || ||||||||||||||||| |||||||||||||||||||||||||| |||||    
T  29848121 atagcaagaaatgttgattgttaaagaccaaaagtatttttcaac-atgacctcatttaaaagagttatagccatttcttgcaatgttatatttatcttt 29848219  T
Q  320 ttaacaacttcattttg-ttgaggtgttcttggacaggaaaattataagagacatcattctcatnnnnnnntatatcttgaaccattcattttaaaattc 418  Q
    ||||||||||||||| | || ||||||| || |||| ||||||||||||||| |||||||||||        || ||||||| |||||||||||||||||    
T  29848220 ttaacaacttcatttcgttttaggtgtt-ttagacatgaaaattataagagatatcattctcataaaaaa--atgtcttgaagcattcattttaaaattc 29848316  T
Q  419 ctctccatgatcatttctcactgagatgatctatatagatatttctcattatgaattcttt 479  Q
     ||||||||||||||||||||| ||||||||  ||||||| ||||||||| | ||||||||    
T  29848317 ttctccatgatcatttctcact-agatgatc--tatagatctttctcattctaaattcttt 29848374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 201 - 360
Target Start/End: Original strand, 9510081 - 9510241
Alignment:
Q  201 atagaaactctactcagaatatagcaagaaatgttaatggtttctgtcaaaaagta-ttttcaacgttggcctcatttaaaagagttctagccatttctt 299  Q
    |||||||||||| ||| ||| || |||||  ||||||||| ||||| | ||||||| |||||||| || |  |||||||| |  ||||| ||||||||||    
T  9510081 atagaaactctattcaaaatgtaacaagatgtgttaatggcttctgcccaaaagtaattttcaacatttgattcatttaacattgttcttgccatttctt 9510180  T
Q  300 gcaatgttatatttttctttttaacaacttcattttgttgaggtgttcttggacaggaaaa 360  Q
    |||| ||| |||||||  ||| ||||||| |||||||||| || ||||||| ||| |||||    
T  9510181 gcaaggttctattttttctttcaacaactccattttgttgtggagttcttgcacaagaaaa 9510241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 201 - 360
Target Start/End: Complemental strand, 18655242 - 18655082
Alignment:
Q  201 atagaaactctactcagaatatagcaagaaatgttaatggtttctgtcaaaaagta-ttttcaacgttggcctcatttaaaagagttctagccatttctt 299  Q
    |||||||||||| ||| ||| || |||||  ||||||||| ||||| | ||||||| |||||||| || |  |||||||| |  ||||| ||||||||||    
T  18655242 atagaaactctattcaaaatgtaacaagatgtgttaatggcttctgcccaaaagtaattttcaacatttgattcatttaacattgttcttgccatttctt 18655143  T
Q  300 gcaatgttatatttttctttttaacaacttcattttgttgaggtgttcttggacaggaaaa 360  Q
    |||| ||| |||||||  ||| ||||||| |||||||||| || ||||||| ||| |||||    
T  18655142 gcaaggttctattttttctttcaacaactccattttgttgtggagttcttgcacaagaaaa 18655082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 201 - 360
Target Start/End: Complemental strand, 45018374 - 45018214
Alignment:
Q  201 atagaaactctactcagaatatagcaagaaatgttaatggtttctgtcaaaaagta-ttttcaacgttggcctcatttaaaagagttctagccatttctt 299  Q
    |||||||||||| ||| ||| || |||||  ||||||||| ||||| | ||||||| |||||||| || |  |||||||| |  ||||| ||||||||||    
T  45018374 atagaaactctattcaaaatgtaacaagatgtgttaatggcttctgcccaaaagtaattttcaacatttgattcatttaacattgttcttgccatttctt 45018275  T
Q  300 gcaatgttatatttttctttttaacaacttcattttgttgaggtgttcttggacaggaaaa 360  Q
    |||| ||| |||||||  ||| ||||||| |||||||||| || ||||||| ||| |||||    
T  45018274 gcaaggttctattttttctttcaacaactccattttgttgtggagttcttgcacaagaaaa 45018214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 272 - 360
Target Start/End: Complemental strand, 24992604 - 24992516
Alignment:
Q  272 tcatttaaaagagttctagccatttcttgcaatgttatatttttctttttaacaacttcattttgttgaggtgttcttggacaggaaaa 360  Q
    |||||||||| |||||| |||||||||||||| ||| |||||||  ||| ||||| | ||||||||||||| ||||| ||||| |||||    
T  24992604 tcatttaaaatagttcttgccatttcttgcaaagttctattttttctttcaacaaatccattttgttgaggagttctaggacaagaaaa 24992516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 204 - 360
Target Start/End: Original strand, 27166300 - 27166457
Alignment:
Q  204 gaaactctactcagaatatagcaagaaatgttaatggtttctgtcaaaaagtatt-ttcaacgttggcctcatttaaaagagttctagccatttcttgca 302  Q
    ||||||||| ||| ||| ||||||||  ||||||||| ||||| | |||| || | |||||| || |  |||||||| |  ||||||||||||||||| |    
T  27166300 gaaactctattcaaaatgtagcaagatgtgttaatggcttctgcccaaaaataatcttcaacatttgattcatttaacatggttctagccatttcttgta 27166399  T
Q  303 atgttatatttttctttttaacaacttcattttgttgaggtgttcttggacaggaaaa 360  Q
    | ||| |||||||  ||| ||||||| |||||||||| || ||||||| ||| |||||    
T  27166400 aagttctattttttctttcaacaactccattttgttgtggagttcttgcacaagaaaa 27166457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 205 - 350
Target Start/End: Complemental strand, 22906165 - 22906019
Alignment:
Q  205 aaactctactcagaatatagcaagaaatgttaatggtttctgtcaaaaagtatt-ttcaacgttggcctcatttaaaagagttctagccatttcttgcaa 303  Q
    |||||||| ||| ||| ||||||||  ||||||||| ||||| | |||| || | |||||| || |  |||||||| |  ||||||||||||||||| ||    
T  22906165 aaactctattcaaaatgtagcaagatgtgttaatggcttctgcccaaaaataatcttcaacatttgattcatttaacatggttctagccatttcttgtaa 22906066  T
Q  304 tgttatatttttctttttaacaacttcattttgttgaggtgttcttg 350  Q
     ||| |||||||  ||| ||||||| |||||||||| || |||||||    
T  22906065 agttctattttttctttcaacaactccattttgttgtggagttcttg 22906019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 107 - 171
Target Start/End: Complemental strand, 1794699 - 1794635
Alignment:
Q  107 atataacaataacacccaaaaatatggcaataagaaatatttgattttctatttttccatagttc 171  Q
    |||||||||||||| |||||||| ||  ||||||| || |||| |||| |||||||||| |||||    
T  1794699 atataacaataacaaccaaaaatgtgaaaataagagatgtttggttttttatttttccagagttc 1794635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 2e-23; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 59 - 139
Target Start/End: Original strand, 16758574 - 16758654
Alignment:
Q  59 ttgtctgaccttgagtcaaatttttcaaggttgtccttatgattaaggatataacaataacacccaaaaatatggcaataa 139  Q
    |||||| || |||||||||||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||| |||||    
T  16758574 ttgtctaactttgagtcaaattttccaaggttatccttatgattaaggatataacaataacatccaaaaatatggaaataa 16758654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 201 - 360
Target Start/End: Original strand, 16138501 - 16138661
Alignment:
Q  201 atagaaactctactcagaatatagcaagaaatgttaatggtttctgtcaaaaagta-ttttcaacgttggcctcatttaaaagagttctagccatttctt 299  Q
    |||||||||||| ||| ||| || |||||| ||||||||| ||||| | ||||||| |||||||| || |  |||||||| |  ||||| ||||||||||    
T  16138501 atagaaactctattcaaaatgtaacaagaagtgttaatggcttctgcccaaaagtaattttcaacatttgattcatttaacattgttcttgccatttctt 16138600  T
Q  300 gcaatgttatatttttctttttaacaacttcattttgttgaggtgttcttggacaggaaaa 360  Q
    |||| ||| |||||||  ||| ||||||| |||||||||| || ||||||| ||| |||||    
T  16138601 gcaaggttctattttttctttcaacaactccattttgttgtggagttcttgcacaagaaaa 16138661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 272 - 360
Target Start/End: Complemental strand, 610283 - 610195
Alignment:
Q  272 tcatttaaaagagttctagccatttcttgcaatgttatatttttctttttaacaacttcattttgttgaggtgttcttggacaggaaaa 360  Q
    |||||||||| |||||| |||||||||||||| ||  |||||||  ||| ||||||| ||||||||||||| ||||| |||||||||||    
T  610283 tcatttaaaatagttcttgccatttcttgcaaagtcctattttttctttcaacaactccattttgttgaggagttctaggacaggaaaa 610195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 201 - 360
Target Start/End: Original strand, 5388232 - 5388392
Alignment:
Q  201 atagaaactctactcagaatatagcaagaaatgttaatggtttctgtcaaaaagta-ttttcaacgttggcctcatttaaaagagttctagccatttctt 299  Q
    |||||||||||| ||| ||| || |||||  ||||||||| ||||| | ||||||| |||||||| || |  |||||||| |  ||||| ||||||||||    
T  5388232 atagaaactctattcaaaatgtaacaagatgtgttaatggcttctgcccaaaagtaattttcaacatttgattcatttaacattgttcttgccatttctt 5388331  T
Q  300 gcaatgttatatttttctttttaacaacttcattttgttgaggtgttcttggacaggaaaa 360  Q
    |||| ||| |||||||  ||| ||||||| |||||||||| || ||||||| ||| |||||    
T  5388332 gcaaggttctattttttctttcaacaactccattttgttgtggagttcttgcacaagaaaa 5388392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 201 - 360
Target Start/End: Complemental strand, 6538501 - 6538341
Alignment:
Q  201 atagaaactctactcagaatatagcaagaaatgttaatggtttctgtcaaaaagta-ttttcaacgttggcctcatttaaaagagttctagccatttctt 299  Q
    |||||||||||| ||| ||| || |||||  ||||||||| ||||| | ||||||| |||||||| || |  |||||||| |  ||||| ||||||||||    
T  6538501 atagaaactctattcaaaatgtaacaagatgtgttaatggcttctgcccaaaagtaattttcaacatttgattcatttaacattgttcttgccatttctt 6538402  T
Q  300 gcaatgttatatttttctttttaacaacttcattttgttgaggtgttcttggacaggaaaa 360  Q
    |||| ||| |||||||  ||| ||||||| |||||||||| || ||||||| ||| |||||    
T  6538401 gcaaggttctattttttctttcaacaactccattttgttgtggagttcttgcacaagaaaa 6538341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 201 - 360
Target Start/End: Complemental strand, 8505073 - 8504913
Alignment:
Q  201 atagaaactctactcagaatatagcaagaaatgttaatggtttctgtcaaaaagta-ttttcaacgttggcctcatttaaaagagttctagccatttctt 299  Q
    |||||||||||| ||| ||| || |||||  ||||||||| ||||| | ||||||| |||||||| || |  |||||||| |  ||||| ||||||||||    
T  8505073 atagaaactctattcaaaatgtaacaagatgtgttaatggcttctgcccaaaagtaattttcaacatttgattcatttaacattgttcttgccatttctt 8504974  T
Q  300 gcaatgttatatttttctttttaacaacttcattttgttgaggtgttcttggacaggaaaa 360  Q
    |||| ||| |||||||  ||| ||||||| |||||||||| || ||||||| ||| |||||    
T  8504973 gcaaggttctattttttctttcaacaactccattttgttgtggagttcttgcacaagaaaa 8504913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 201 - 360
Target Start/End: Original strand, 9541557 - 9541717
Alignment:
Q  201 atagaaactctactcagaatatagcaagaaatgttaatggtttctgtcaaaaagta-ttttcaacgttggcctcatttaaaagagttctagccatttctt 299  Q
    |||||||||||| ||| ||| || |||||  ||||||||| ||||| | ||||||| |||||||| || |  |||||||| |  ||||| ||||||||||    
T  9541557 atagaaactctattcaaaatgtaacaagatgtgttaatggcttctgcccaaaagtaattttcaacatttgattcatttaacattgttcttgccatttctt 9541656  T
Q  300 gcaatgttatatttttctttttaacaacttcattttgttgaggtgttcttggacaggaaaa 360  Q
    |||| ||| |||||||  ||| ||||||| |||||||||| || ||||||| ||| |||||    
T  9541657 gcaaggttctattttttctttcaacaactccattttgttgtggagttcttgcacaagaaaa 9541717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 201 - 360
Target Start/End: Original strand, 26354616 - 26354776
Alignment:
Q  201 atagaaactctactcagaatatagcaagaaatgttaatggtttctgtcaaaaagta-ttttcaacgttggcctcatttaaaagagttctagccatttctt 299  Q
    |||||||||||| ||| ||| || |||||  ||||||||| ||||| | ||||||| |||||||| || |  |||||||| |  ||||| ||||||||||    
T  26354616 atagaaactctattcaaaatgtaacaagatgtgttaatggcttctgcccaaaagtaattttcaacatttgattcatttaacattgttcttgccatttctt 26354715  T
Q  300 gcaatgttatatttttctttttaacaacttcattttgttgaggtgttcttggacaggaaaa 360  Q
    |||| ||| |||||||  ||| ||||||| |||||||||| || ||||||| ||| |||||    
T  26354716 gcaaggttctattttttctttcaacaactccattttgttgtggagttcttgcacaagaaaa 26354776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 201 - 360
Target Start/End: Complemental strand, 32102404 - 32102244
Alignment:
Q  201 atagaaactctactcagaatatagcaagaaatgttaatggtttctgtcaaaaagta-ttttcaacgttggcctcatttaaaagagttctagccatttctt 299  Q
    |||||||||||| ||| ||| || |||||  ||||||||| ||||| | ||||||| |||||||| || |  |||||||| |  ||||| ||||||||||    
T  32102404 atagaaactctattcaaaatgtaacaagatgtgttaatggcttctgcccaaaagtaattttcaacatttgattcatttaacattgttcttgccatttctt 32102305  T
Q  300 gcaatgttatatttttctttttaacaacttcattttgttgaggtgttcttggacaggaaaa 360  Q
    |||| ||| |||||||  ||| ||||||| |||||||||| || ||||||| ||| |||||    
T  32102304 gcaaggttctattttttctttcaacaactccattttgttgtggagttcttgcacaagaaaa 32102244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 201 - 360
Target Start/End: Complemental strand, 46501138 - 46500978
Alignment:
Q  201 atagaaactctactcagaatatagcaagaaatgttaatggtttctgtcaaaaagta-ttttcaacgttggcctcatttaaaagagttctagccatttctt 299  Q
    |||||||||||| ||| ||| || |||||  ||||||||| ||||| | ||||||| |||||||| || |  |||||||| |  ||||| ||||||||||    
T  46501138 atagaaactctattcaaaatgtaacaagatgtgttaatggcttctgcccaaaagtaattttcaacatttgattcatttaacattgttcttgccatttctt 46501039  T
Q  300 gcaatgttatatttttctttttaacaacttcattttgttgaggtgttcttggacaggaaaa 360  Q
    |||| ||| |||||||  ||| ||||||| |||||||||| || ||||||| ||| |||||    
T  46501038 gcaaggttctattttttctttcaacaactccattttgttgtggagttcttgcacaagaaaa 46500978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 50 - 348
Target Start/End: Original strand, 14640985 - 14641283
Alignment:
Q  50 aagattcccttgtctgaccttgagtcaaatttttcaaggttgtccttatgattaaggatataacaataacacccaaaaatatggcaataagaaatatttg 149  Q
    |||||||| || |||||  |||| ||||||||| | ||||| || |||| ||| |  ||||||||| |||| |||||||| ||  |||||||||| | ||    
T  14640985 aagattcctttatctgattttgaatcaaattttcctaggttttctttatcatttaaaatataacaaaaacaaccaaaaatgtgaaaataagaaatgtctg 14641084  T
Q  150 attttctatttttccatagttcgattgaagttttgttaaaaattctttttaatagaaactctactcagaatatagcaagaaatgttaatggtttctgtca 249  Q
     |||| | |||||||| |||||    | ||||||||| | |||| ||| |||||||||||| | | | ||||||||||||| ||||||| | ||| | |     
T  14641085 gttttttgtttttccagagttcataaggagttttgttgagaatt-tttctaatagaaactcgatttataatatagcaagaagtgttaatagcttcagccc 14641183  T
Q  250 aaaagta-ttttcaacgttggcctcatttaaaagagttctagccatttcttgcaatgttatatttttctttttaacaacttcattttgttgaggtgttct 348  Q
    |||| || |||||||| || |  ||||| |  |  ||||| ||||||||||| || ||   ||||||| ||| ||||||| ||||||||||||| |||||    
T  14641184 aaaaatatttttcaacatttgattcattaatcattgttcttgccatttcttgtaaagtacgatttttcctttcaacaactccattttgttgaggagttct 14641283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 284 - 360
Target Start/End: Complemental strand, 44901239 - 44901163
Alignment:
Q  284 gttctagccatttcttgcaatgttatatttttctttttaacaacttcattttgttgaggtgttcttggacaggaaaa 360  Q
    ||||| |||||||||||||| ||| |||||||  ||| ||||||| |||||||||| || ||||||| ||| |||||    
T  44901239 gttcttgccatttcttgcaaggttctattttttctttcaacaactccattttgttgtggagttcttgcacaagaaaa 44901163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 201 - 315
Target Start/End: Complemental strand, 44901381 - 44901266
Alignment:
Q  201 atagaaactctactcagaatatagcaagaaatgttaatggtttctgtcaaaaagta-ttttcaacgttggcctcatttaaaagagttctagccatttctt 299  Q
    |||||||||||| ||| ||| || |||||  ||||||||| ||||| | ||||||| |||||||| || |  |||||||| |  ||||| ||||||||||    
T  44901381 atagaaactctattcaaaatgtaacaagatgtgttaatggcttctgcccaaaagtaattttcaacatttgattcatttaacattgttcttgccatttctt 44901282  T
Q  300 gcaatgttatattttt 315  Q
    |||| ||| |||||||    
T  44901281 gcaaggttctattttt 44901266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 284 - 360
Target Start/End: Complemental strand, 15179073 - 15178997
Alignment:
Q  284 gttctagccatttcttgcaatgttatatttttctttttaacaacttcattttgttgaggtgttcttggacaggaaaa 360  Q
    ||||| ||||||||||| | |||| |||||||  ||| ||||||| |||||||||| || ||||||| ||| |||||    
T  15179073 gttcttgccatttcttggagtgttctattttttctttcaacaactccattttgttgtggagttcttgcacatgaaaa 15178997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 1e-18; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 20 - 171
Target Start/End: Original strand, 23914985 - 23915130
Alignment:
Q  20 tatgcctttgtggtagtagagtagccaaggaagattcccttgtctgaccttgagtcaaatttttcaaggttgtccttatgattaaggatataacaataac 119  Q
    |||| ||||| | |||||||||| | ||| |||||||  |||| |||| ||||||||||||||  || ||||||||||||||||||||||||  | |||     
T  23914985 tatgtctttgagatagtagagtatctaagaaagattcatttgtttgactttgagtcaaattttctaaagttgtccttatgattaaggatatagtagtaag 23915084  T
Q  120 acccaaaaatatggcaataagaaatatttgattttctatttttccatagttc 171  Q
    |||||||||      |||||||||||||||||||||| | |||||| |||||    
T  23915085 acccaaaaa------aataagaaatatttgattttctttctttccaaagttc 23915130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 272 - 360
Target Start/End: Original strand, 724933 - 725021
Alignment:
Q  272 tcatttaaaagagttctagccatttcttgcaatgttatatttttctttttaacaacttcattttgttgaggtgttcttggacaggaaaa 360  Q
    |||||||||| |||||| |||||||||||||| ||  |||||||  ||| ||||||| ||||||||||||| ||||| |||||||||||    
T  724933 tcatttaaaatagttcttgccatttcttgcaaagtcctattttttctttcaacaactccattttgttgaggagttctaggacaggaaaa 725021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 201 - 360
Target Start/End: Complemental strand, 18383764 - 18383604
Alignment:
Q  201 atagaaactctactcagaatatagcaagaaatgttaatggtttctgtcaaaaagta-ttttcaacgttggcctcatttaaaagagttctagccatttctt 299  Q
    |||||||||||| ||| ||| || |||||  ||||||||| ||||| | ||||||| |||||||| || |  |||||||| |  ||||| ||||||||||    
T  18383764 atagaaactctattcaaaatgtaacaagatgtgttaatggcttctgcccaaaagtaattttcaacatttgattcatttaacattgttcttgccatttctt 18383665  T
Q  300 gcaatgttatatttttctttttaacaacttcattttgttgaggtgttcttggacaggaaaa 360  Q
    |||| ||| |||||||  ||| ||||||| |||||||||| || ||||||| ||| |||||    
T  18383664 gcaaggttctattttttctttcaacaactccattttgttgtggagttcttgcacaagaaaa 18383604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 201 - 360
Target Start/End: Original strand, 26198642 - 26198802
Alignment:
Q  201 atagaaactctactcagaatatagcaagaaatgttaatggtttctgtcaaaaagta-ttttcaacgttggcctcatttaaaagagttctagccatttctt 299  Q
    |||||||||||| ||| ||| || |||||  ||||||||| ||||| | ||||||| |||||||| || |  |||||||| |  ||||| ||||||||||    
T  26198642 atagaaactctattcaaaatgtaacaagatgtgttaatggcttctgcccaaaagtaattttcaacatttgattcatttaacattgttcttgccatttctt 26198741  T
Q  300 gcaatgttatatttttctttttaacaacttcattttgttgaggtgttcttggacaggaaaa 360  Q
    |||| ||| |||||||  ||| ||||||| |||||||||| || ||||||| ||| |||||    
T  26198742 gcaaggttctattttttctttcaacaactccattttgttgtggagttcttgcacaagaaaa 26198802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 201 - 360
Target Start/End: Complemental strand, 27416172 - 27416012
Alignment:
Q  201 atagaaactctactcagaatatagcaagaaatgttaatggtttctgtcaaaaagta-ttttcaacgttggcctcatttaaaagagttctagccatttctt 299  Q
    |||||||||||| ||| ||| || |||||  ||||||||| ||||| | ||||||| |||||||| || |  |||||||| |  ||||| ||||||||||    
T  27416172 atagaaactctattcaaaatgtaacaagatgtgttaatggcttctgcccaaaagtaattttcaacatttgattcatttaacattgttcttgccatttctt 27416073  T
Q  300 gcaatgttatatttttctttttaacaacttcattttgttgaggtgttcttggacaggaaaa 360  Q
    |||| ||| |||||||  ||| ||||||| |||||||||| || ||||||| ||| |||||    
T  27416072 gcaaggttctattttttctttcaacaactccattttgttgtggagttcttgcacaagaaaa 27416012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 201 - 360
Target Start/End: Complemental strand, 33943344 - 33943184
Alignment:
Q  201 atagaaactctactcagaatatagcaagaaatgttaatggtttctgtcaaaaagta-ttttcaacgttggcctcatttaaaagagttctagccatttctt 299  Q
    |||||||||||| ||| ||| || |||||  ||||||||| ||||| | ||||||| |||||||| || |  |||||||| |  ||||| ||||||||||    
T  33943344 atagaaactctattcaaaatgtaacaagatgtgttaatggcttctgcccaaaagtaattttcaacatttgattcatttaacattgttcttgccatttctt 33943245  T
Q  300 gcaatgttatatttttctttttaacaacttcattttgttgaggtgttcttggacaggaaaa 360  Q
    |||| ||| |||||||  ||| ||||||| |||||||||| || ||||||| ||| |||||    
T  33943244 gcaaggttctattttttctttcaacaactccattttgttgtggagttcttgcacaagaaaa 33943184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 272 - 370
Target Start/End: Complemental strand, 18711547 - 18711448
Alignment:
Q  272 tcatttaaaagagttctagccatttcttgcaatgttatatttttctttttaacaacttcattttgttgaggtgttcttggacagga-aaattataagaga 370  Q
    |||||||| | |||||| ||||||||||||| |||| |||||||| |||  |||||  ||||||||||||||||||| |||||||| ||||||| |||||    
T  18711547 tcatttaagatagttcttgccatttcttgcagtgttctatttttcctttctacaacaccattttgttgaggtgttctaggacaggagaaattatgagaga 18711448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 49 - 165
Target Start/End: Original strand, 22454045 - 22454161
Alignment:
Q  49 gaagattcccttgtctgaccttgagtcaaatttttcaaggttgtccttatgattaaggatataacaataacacccaaaaatatggcaataagaaatattt 148  Q
    ||||||||| ||||||||  |||||||||| ||| | ||||| || |||| ||| |  || |||||| |||| |||||||||||  |||||||||| |||    
T  22454045 gaagattcctttgtctgattttgagtcaaactttcctaggttttctttatcatttaaaatttaacaaaaacaaccaaaaatatgaaaataagaaatgttt 22454144  T
Q  149 gattttctatttttcca 165  Q
    | |||||||||||||||    
T  22454145 ggttttctatttttcca 22454161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 204 - 360
Target Start/End: Complemental strand, 20951882 - 20951725
Alignment:
Q  204 gaaactctactcagaatatagcaagaaatgttaatggtttctgtcaaaaagtatt-ttcaacgttggcctcatttaaaagagttctagccatttcttgca 302  Q
    ||||||||| ||| ||| ||||||||  ||||||||| ||||| | |||| || | |||||| || |  |||||||| |  ||||||||||||||||| |    
T  20951882 gaaactctattcaaaatgtagcaagatgtgttaatggcttctgcccaaaaataatcttcaacatttgattcatttaacatggttctagccatttcttgta 20951783  T
Q  303 atgttatatttttctttttaacaacttcattttgttgaggtgttcttggacaggaaaa 360  Q
    | ||| |||||||  ||| ||||||| |||||||||| || ||||||| ||| |||||    
T  20951782 aagttctattttttctttcaacaactccattttgttgtggagttcttgcacaagaaaa 20951725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 272 - 370
Target Start/End: Original strand, 15327222 - 15327321
Alignment:
Q  272 tcatttaaaagagttctagccatttcttgcaatgttatatttttctttttaacaacttcattttgttgaggtgttcttggacagga-aaattataagaga 370  Q
    |||||||| | |||||| ||||||||||| | |||| |||||||| |||  |||||  |||| |||||||||||||| |||||||| ||||||| |||||    
T  15327222 tcatttaagatagttcttgccatttcttgtagtgttctatttttcctttctacaacaccattctgttgaggtgttctaggacaggagaaattatgagaga 15327321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 284 - 339
Target Start/End: Original strand, 19382180 - 19382235
Alignment:
Q  284 gttctagccatttcttgcaatgttatatttttctttttaacaacttcattttgttg 339  Q
    ||||| |||||||||||||| ||| |||||||| ||| ||||||| ||||||||||    
T  19382180 gttcttgccatttcttgcaaggttctatttttcctttcaacaactccattttgttg 19382235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 107 - 360
Target Start/End: Complemental strand, 24416344 - 24416090
Alignment:
Q  107 atataacaataacacccaaaaatatggcaataagaaatatttgattttctatttttcc-atagttcgattgaagttttgttaaaaattctttttaataga 205  Q
    |||||||||||||| |||||||||||  |||| || || || | |||| ||||||||| | ||||||  || ||||||||| |||| | ||| |||| ||    
T  24416344 atataacaataacatccaaaaatatgaaaatatgagatgttaggttttatatttttcctagagttcgtatggagttttgtttaaaact-tttctaattga 24416246  T
Q  206 aactctactcagaatatagcaagaaatgttaatggtttctgtcaaaaagtatttt-caacgttggcctcatttaaaagagttctagccatttcttgcaat 304  Q
    ||| ||  | |  |||||||||||| | || |||| ||| | | ||||||||||| | || || |  |||||||| |  ||||| ||||||||||| | |    
T  24416245 aaccctgtttatgatatagcaagaagtatttatggcttcagcccaaaagtatttttctacatttgattcatttaacattgttcttgccatttcttggagt 24416146  T
Q  305 gttatatttttctttttaacaacttcattttgttgaggtgttcttggacaggaaaa 360  Q
    ||| |||||||  ||| ||||||| |||||||||| || ||||||| ||| |||||    
T  24416145 gttctattttttctttcaacaactccattttgttgtggagttcttgcacatgaaaa 24416090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 107 - 360
Target Start/End: Original strand, 30450864 - 30451117
Alignment:
Q  107 atataacaataacacccaaaaatatggcaataagaaatatttgattttctatttttccatagttcgattgaagttttgttaaaaattctttttaatagaa 206  Q
    |||||||||||||| |||||||||||  |||| || || || | |||| |||||||||| ||||||  ||  |||||||| |||| | ||| |||| |||    
T  30450864 atataacaataacatccaaaaatatgaaaatatgagatgttaggttttatatttttccagagttcgtatggggttttgtttaaaact-tttctaattgaa 30450962  T
Q  207 actctactcagaatatagcaagaaatgttaatggtttctgtcaaaaagtatttt-caacgttggcctcatttaaaagagttctagccatttcttgcaatg 305  Q
    || ||  | |  ||||| |||||| | || |||| ||| | | ||||||||||| | || || |  |||||||| |  ||||| ||||||||||| | ||    
T  30450963 accctgtttatgatataacaagaagtatttatggcttcagcccaaaagtatttttctacatttgattcatttaacattgttcttgccatttcttggagtg 30451062  T
Q  306 ttatatttttctttttaacaacttcattttgttgaggtgttcttggacaggaaaa 360  Q
    || |||||||  ||| ||||||| |||||||||| || ||||||| ||| |||||    
T  30451063 ttctattttttctttcaacaactccattttgttgtggagttcttgcacatgaaaa 30451117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 107 - 171
Target Start/End: Complemental strand, 5604314 - 5604250
Alignment:
Q  107 atataacaataacacccaaaaatatggcaataagaaatatttgattttctatttttccatagttc 171  Q
    |||||||||||||| |||||||| ||  ||||||| || |||| |||| |||||||||| |||||    
T  5604314 atataacaataacaaccaaaaatgtgaaaataagagatgtttggttttttatttttccagagttc 5604250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 4e-18; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 194 - 360
Target Start/End: Complemental strand, 6426338 - 6426171
Alignment:
Q  194 ctttttaatagaaactctactcagaatatagcaagaaatgttaatggtttctgtcaaaaagta-ttttcaacgttggcctcatttaaaagagttctagcc 292  Q
    |||||| |||||||||||| ||| ||| || |||||  ||||||||| ||||| | ||||||| |||||||| || |  |||||||| |  ||||| |||    
T  6426338 cttttttatagaaactctattcaaaatgtaacaagatgtgttaatggcttctgcccaaaagtaattttcaacatttgattcatttaacattgttcttgcc 6426239  T
Q  293 atttcttgcaatgttatatttttctttttaacaacttcattttgttgaggtgttcttggacaggaaaa 360  Q
    ||||||||||| ||| |||||||  ||| ||||||| |||||||||| || ||||||| ||| |||||    
T  6426238 atttcttgcaaggttctattttttctttcaacaactacattttgttgtggagttcttgcacaagaaaa 6426171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 201 - 360
Target Start/End: Complemental strand, 8976870 - 8976710
Alignment:
Q  201 atagaaactctactcagaatatagcaagaaatgttaatggtttctgtcaaaaagta-ttttcaacgttggcctcatttaaaagagttctagccatttctt 299  Q
    |||||||||||| ||| ||| || |||||  ||||||||| ||||| | ||||||| |||||||| || |  |||||||| |  ||||| ||||||||||    
T  8976870 atagaaactctattcaaaatgtaacaagatgtgttaatggcttctgcccaaaagtaattttcaacatttgattcatttaacattgttcttgccatttctt 8976771  T
Q  300 gcaatgttatatttttctttttaacaacttcattttgttgaggtgttcttggacaggaaaa 360  Q
    |||| ||| |||||||  ||| ||||||| |||||||||| || ||||||| ||| |||||    
T  8976770 gcaaggttctattttttctttcaacaactccattttgttgtggagttcttgcacaagaaaa 8976710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 201 - 360
Target Start/End: Complemental strand, 9541159 - 9540999
Alignment:
Q  201 atagaaactctactcagaatatagcaagaaatgttaatggtttctgtcaaaaagta-ttttcaacgttggcctcatttaaaagagttctagccatttctt 299  Q
    |||||||||||| ||| ||| || |||||  ||||||||| ||||| | ||||||| |||||||| || |  |||||||| |  ||||| ||||||||||    
T  9541159 atagaaactctattcaaaatgtaacaagatgtgttaatggcttctgcccaaaagtaattttcaacatttgattcatttaacattgttcttgccatttctt 9541060  T
Q  300 gcaatgttatatttttctttttaacaacttcattttgttgaggtgttcttggacaggaaaa 360  Q
    |||| ||| |||||||  ||| ||||||| |||||||||| || ||||||| ||| |||||    
T  9541059 gcaaggttctattttttctttcaacaactccattttgttgtggagttcttgcacaagaaaa 9540999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 201 - 360
Target Start/End: Complemental strand, 16405633 - 16405473
Alignment:
Q  201 atagaaactctactcagaatatagcaagaaatgttaatggtttctgtcaaaaagta-ttttcaacgttggcctcatttaaaagagttctagccatttctt 299  Q
    |||||||||||| ||| ||| || |||||  ||||||||| ||||| | ||||||| |||||||| || |  |||||||| |  ||||| ||||||||||    
T  16405633 atagaaactctattcaaaatgtaacaagatgtgttaatggcttctgcccaaaagtaattttcaacatttgattcatttaacattgttcttgccatttctt 16405534  T
Q  300 gcaatgttatatttttctttttaacaacttcattttgttgaggtgttcttggacaggaaaa 360  Q
    |||| ||| |||||||  ||| ||||||| |||||||||| || ||||||| ||| |||||    
T  16405533 gcaaggttctattttttctttcaacaactccattttgttgtggagttcttgcacaagaaaa 16405473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 272 - 360
Target Start/End: Complemental strand, 19688348 - 19688260
Alignment:
Q  272 tcatttaaaagagttctagccatttcttgcaatgttatatttttctttttaacaacttcattttgttgaggtgttcttggacaggaaaa 360  Q
    |||||||||| |||||| |||||||||||||| ||| |||||||  | | ||||||| ||||||||||||| ||||| ||||| |||||    
T  19688348 tcatttaaaatagttcttgccatttcttgcaaagttctattttttctatcaacaactccattttgttgaggagttctaggacaagaaaa 19688260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 272 - 360
Target Start/End: Original strand, 25507799 - 25507887
Alignment:
Q  272 tcatttaaaagagttctagccatttcttgcaatgttatatttttctttttaacaacttcattttgttgaggtgttcttggacaggaaaa 360  Q
    |||||||||| |||||| || ||||||||||| ||  |||||||| |||  |||||  ||||||||||||||||||| ||||| |||||    
T  25507799 tcatttaaaatagttcttgcaatttcttgcaacgtcctatttttcctttctacaacaccattttgttgaggtgttctaggacaagaaaa 25507887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 107 - 171
Target Start/End: Original strand, 4363313 - 4363377
Alignment:
Q  107 atataacaataacacccaaaaatatggcaataagaaatatttgattttctatttttccatagttc 171  Q
    |||||||||||||| |||||||| ||  |||| ||||| || | ||||||||||||||| |||||    
T  4363313 atataacaataacaaccaaaaatgtgaaaatatgaaatgttaggttttctatttttccagagttc 4363377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 284 - 360
Target Start/End: Original strand, 28361130 - 28361206
Alignment:
Q  284 gttctagccatttcttgcaatgttatatttttctttttaacaacttcattttgttgaggtgttcttggacaggaaaa 360  Q
    ||||| ||||||||||| | |||| |||||||  ||| ||||||| |||||||||| || ||||||| ||| |||||    
T  28361130 gttcttgccatttcttggagtgttctattttttctttcaacaactccattttgttgtggagttcttgcacatgaaaa 28361206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0254 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0254
Description:

Target: scaffold0254; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 201 - 360
Target Start/End: Original strand, 14296 - 14456
Alignment:
Q  201 atagaaactctactcagaatatagcaagaaatgttaatggtttctgtcaaaaagta-ttttcaacgttggcctcatttaaaagagttctagccatttctt 299  Q
    |||||||||||| ||| ||| || |||||  ||||||||| ||||| | ||||||| |||||||| || |  |||||||| |  ||||| ||||||||||    
T  14296 atagaaactctattcaaaatgtaacaagatgtgttaatggcttctgcccaaaagtaattttcaacatttgattcatttaacattgttcttgccatttctt 14395  T
Q  300 gcaatgttatatttttctttttaacaacttcattttgttgaggtgttcttggacaggaaaa 360  Q
    |||| ||| |||||||  ||| ||||||| |||||||||| || ||||||| ||| |||||    
T  14396 gcaaggttctattttttctttcaacaactccattttgttgtggagttcttgcacaagaaaa 14456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 272 - 360
Target Start/End: Complemental strand, 52566 - 52478
Alignment:
Q  272 tcatttaaaagagttctagccatttcttgcaatgttatatttttctttttaacaacttcattttgttgaggtgttcttggacaggaaaa 360  Q
    |||||||||| |||||| |||||||||||||| ||  |||||||  ||| ||||||| ||||||||||||| ||||| |||||||||||    
T  52566 tcatttaaaatagttcttgccatttcttgcaaagtcctattttttctttcaacaactccattttgttgaggagttctaggacaggaaaa 52478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 201 - 360
Target Start/End: Original strand, 21209287 - 21209447
Alignment:
Q  201 atagaaactctactcagaatatagcaagaaatgttaatggtttctgtcaaaaagta-ttttcaacgttggcctcatttaaaagagttctagccatttctt 299  Q
    |||||||||||| ||| ||| || |||||  ||||||||| ||||| | ||||||| |||||||| || |  |||||||| |  ||||| ||||||||||    
T  21209287 atagaaactctattcaaaatgtaacaagatgtgttaatggcttctgcccaaaagtaattttcaacatttgattcatttaacattgttcttgccatttctt 21209386  T
Q  300 gcaatgttatatttttctttttaacaacttcattttgttgaggtgttcttggacaggaaaa 360  Q
    |||| ||| |||||||  ||| ||||||| |||||||||| || ||||||| ||| |||||    
T  21209387 gcaaggttctattttttctttcaacaactccattttgttgtggagttcttgcacaagaaaa 21209447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 201 - 360
Target Start/End: Original strand, 14888006 - 14888166
Alignment:
Q  201 atagaaactctactcagaatatagcaagaaatgttaatggtttctgtcaaaaagtatt-ttcaacgttggcctcatttaaaagagttctagccatttctt 299  Q
    |||||||||||| ||| ||| || |||||  ||||||||| ||||| | ||||||| | |||||| || |  |||||||| |  ||||| ||||||||||    
T  14888006 atagaaactctattcaaaatgtaacaagatgtgttaatggcttctgcccaaaagtaatcttcaacatttgattcatttaacattgttcttgccatttctt 14888105  T
Q  300 gcaatgttatatttttctttttaacaacttcattttgttgaggtgttcttggacaggaaaa 360  Q
    |||| ||| |||||||  ||| ||||||| |||||||||| || ||||||| ||| |||||    
T  14888106 gcaaggttctattttttctttcaacaactccattttgttgtggagttcttgcacaagaaaa 14888166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 284 - 360
Target Start/End: Complemental strand, 22834678 - 22834602
Alignment:
Q  284 gttctagccatttcttgcaatgttatatttttctttttaacaacttcattttgttgaggtgttcttggacaggaaaa 360  Q
    |||||||||||||||||||| ||| |||||||| ||| ||||||| |||||||||| || ||||||| ||| |||||    
T  22834678 gttctagccatttcttgcaaggttctatttttcctttcaacaactccattttgttgtggagttcttgcacaagaaaa 22834602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 49 - 350
Target Start/End: Original strand, 33598101 - 33598402
Alignment:
Q  49 gaagattcccttgtctgaccttgagtcaaatttttcaaggttgtccttatgattaaggatataacaataacacccaaaaatatggcaataagaaatattt 148  Q
    ||||||||| ||||||||  |||||||||| ||| | ||||| || |||| ||| |  || |||||| |||| |||||||||||  | |||||||| |||    
T  33598101 gaagattcctttgtctgattttgagtcaaactttcctaggttttctttatcatttaaaatgtaacaaaaacaaccaaaaatatgaaagtaagaaatgttt 33598200  T
Q  149 gattttctatttttccatagttcgattgaagttttgttaaaaattctttttaatagaaactctactcagaatatagcaagaaatgttaatggtttctgtc 248  Q
    | ||||||||||||||| || ||    |  |||||||| | |||| ||| | || ||||||||| | | ||||||||||||  ||||||||| ||| | |    
T  33598201 ggttttctatttttccagagctcataaggggttttgttgagaatt-tttctgattgaaactctatttaaaatatagcaagatgtgttaatggcttcagcc 33598299  T
Q  249 aaaaagta-ttttcaacgttggcctcatttaaaagagttctagccatttcttgcaatgttatatttttctttttaacaacttcattttgttgaggtgttc 347  Q
     |||| || |||||||| || |  ||||| |  |  ||||| ||||||||||| |  |||  ||||||| ||| ||||||| ||||||||||||| ||||    
T  33598300 caaaaatatttttcaacatttgattcattaatcattgttcttgccatttcttgtagagttcgatttttcctttcaacaactccattttgttgaggagttc 33598399  T
Q  348 ttg 350  Q
    |||    
T  33598400 ttg 33598402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 272 - 357
Target Start/End: Original strand, 45495663 - 45495748
Alignment:
Q  272 tcatttaaaagagttctagccatttcttgcaatgttatatttttctttttaacaacttcattttgttgaggtgttcttggacagga 357  Q
    |||||||||| |||||| ||||||||||| | |||| |||||||| |||  |||||  |||| |||||||||||||| ||||||||    
T  45495663 tcatttaaaatagttcttgccatttcttgtagtgttctatttttcctttctacaacaccattctgttgaggtgttctaggacagga 45495748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 284 - 360
Target Start/End: Complemental strand, 20747958 - 20747882
Alignment:
Q  284 gttctagccatttcttgcaatgttatatttttctttttaacaacttcattttgttgaggtgttcttggacaggaaaa 360  Q
    ||||| ||||||||||| | |||| |||||||  ||| ||||||| |||||||||| || ||||||| ||| |||||    
T  20747958 gttcttgccatttcttggagtgttctattttttctttcaacaactccattttgttgtggagttcttgcacatgaaaa 20747882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 272 - 360
Target Start/End: Complemental strand, 8998397 - 8998309
Alignment:
Q  272 tcatttaaaagagttctagccatttcttgcaatgttatatttttctttttaacaacttcattttgttgaggtgttcttggacaggaaaa 360  Q
    |||||||||| |||||| |||||||||||||| ||  |||||||  ||| ||||||| ||||||||||||| ||||| |||||||||||    
T  8998397 tcatttaaaatagttcttgccatttcttgcaaagtcctattttttctttcaacaactccattttgttgaggagttctaggacaggaaaa 8998309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 201 - 360
Target Start/End: Complemental strand, 16901970 - 16901810
Alignment:
Q  201 atagaaactctactcagaatatagcaagaaatgttaatggtttctgtcaaaaagta-ttttcaacgttggcctcatttaaaagagttctagccatttctt 299  Q
    |||||||||||| ||| ||| || |||||  ||||||||| ||||| | ||||||| |||||||| || |  |||||||| |  ||||| ||||||||||    
T  16901970 atagaaactctattcaaaatgtaacaagatgtgttaatggcttctgcccaaaagtaattttcaacatttgattcatttaacattgttcttgccatttctt 16901871  T
Q  300 gcaatgttatatttttctttttaacaacttcattttgttgaggtgttcttggacaggaaaa 360  Q
    |||| ||| |||||||  ||| ||||||| |||||||||| || ||||||| ||| |||||    
T  16901870 gcaaggttctattttttctttcaacaactccattttgttgtggagttcttgcacaagaaaa 16901810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 201 - 360
Target Start/End: Complemental strand, 18164089 - 18163929
Alignment:
Q  201 atagaaactctactcagaatatagcaagaaatgttaatggtttctgtcaaaaagta-ttttcaacgttggcctcatttaaaagagttctagccatttctt 299  Q
    |||||||||||| ||| ||| || |||||  ||||||||| ||||| | ||||||| |||||||| || |  |||||||| |  ||||| ||||||||||    
T  18164089 atagaaactctattcaaaatgtaacaagatgtgttaatggcttctgcccaaaagtaattttcaacatttgattcatttaacattgttcttgccatttctt 18163990  T
Q  300 gcaatgttatatttttctttttaacaacttcattttgttgaggtgttcttggacaggaaaa 360  Q
    |||| ||| |||||||  ||| ||||||| |||||||||| || ||||||| ||| |||||    
T  18163989 gcaaggttctattttttctttcaacaactccattttgttgtggagttcttgcacaagaaaa 18163929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 201 - 360
Target Start/End: Original strand, 24928482 - 24928642
Alignment:
Q  201 atagaaactctactcagaatatagcaagaaatgttaatggtttctgtcaaaaagta-ttttcaacgttggcctcatttaaaagagttctagccatttctt 299  Q
    |||||||||||| ||| ||| || |||||  ||||||||| ||||| | ||||||| |||||||| || |  |||||||| |  ||||| ||||||||||    
T  24928482 atagaaactctattcaaaatgtaacaagatgtgttaatggcttctgcccaaaagtaattttcaacatttgattcatttaacattgttcttgccatttctt 24928581  T
Q  300 gcaatgttatatttttctttttaacaacttcattttgttgaggtgttcttggacaggaaaa 360  Q
    |||| ||| |||||||  ||| ||||||| |||||||||| || ||||||| ||| |||||    
T  24928582 gcaaggttctattttttctttcaacaactccattttgttgtggagttcttgcacaagaaaa 24928642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 201 - 360
Target Start/End: Complemental strand, 31360843 - 31360683
Alignment:
Q  201 atagaaactctactcagaatatagcaagaaatgttaatggtttctgtcaaaaagta-ttttcaacgttggcctcatttaaaagagttctagccatttctt 299  Q
    |||||||||||| ||| ||| || |||||  ||||||||| ||||| | ||||||| |||||||| || |  |||||||| |  ||||| ||||||||||    
T  31360843 atagaaactctattcaaaatgtaacaagatgtgttaatggcttctgcccaaaagtaattttcaacatttgattcatttaacattgttcttgccatttctt 31360744  T
Q  300 gcaatgttatatttttctttttaacaacttcattttgttgaggtgttcttggacaggaaaa 360  Q
    |||| ||| |||||||  ||| ||||||| |||||||||| || ||||||| ||| |||||    
T  31360743 gcaaggttctattttttctttcaacaactccattttgttgtggagttcttgcacaagaaaa 31360683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 272 - 354
Target Start/End: Complemental strand, 9007566 - 9007484
Alignment:
Q  272 tcatttaaaagagttctagccatttcttgcaatgttatatttttctttttaacaacttcattttgttgaggtgttcttggaca 354  Q
    |||||||||| |||||| |||||||||||||| ||| |||||||  ||| ||||||| ||||||||||||| ||||| |||||    
T  9007566 tcatttaaaatagttcttgccatttcttgcaaagttctattttttctttcaacaactccattttgttgaggagttctaggaca 9007484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 272 - 370
Target Start/End: Complemental strand, 11377347 - 11377249
Alignment:
Q  272 tcatttaaaagagttctagccatttcttgcaatgttatatttttctttttaacaacttcattttgttgaggtgttcttggacaggaaaattataagaga 370  Q
    |||||||||| |||||| ||||||||||| |||||  |||||||  |||  |||||  ||||||||||||| ||||| ||||| ||||||||| |||||    
T  11377347 tcatttaaaatagttcttgccatttcttgtaatgtcctattttttctttctacaacaccattttgttgaggcgttctaggacaagaaaattatgagaga 11377249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 257 - 360
Target Start/End: Original strand, 27747424 - 27747527
Alignment:
Q  257 ttttcaacgttggcctcatttaaaagagttctagccatttcttgcaatgttatatttttctttttaacaacttcattttgttgaggtgttcttggacagg 356  Q
    |||||||| || | ||||||||| | |||||| ||||||||||| |||||  |||||||  |||  |||||  ||||||||||||||||||| ||||| |    
T  27747424 ttttcaacatttgactcatttaagatagttcttgccatttcttgtaatgtcctattttttctttctacaacaccattttgttgaggtgttctaggacaag 27747523  T
Q  357 aaaa 360  Q
    ||||    
T  27747524 aaaa 27747527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 284 - 349
Target Start/End: Complemental strand, 29563272 - 29563207
Alignment:
Q  284 gttctagccatttcttgcaatgttatatttttctttttaacaacttcattttgttgaggtgttctt 349  Q
    ||||| |||||||||||||| ||| |||||||| ||| ||||||| |||||||||| || ||||||    
T  29563272 gttcttgccatttcttgcaaggttctatttttcctttcaacaactccattttgttgtggagttctt 29563207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 272 - 360
Target Start/End: Complemental strand, 115699 - 115611
Alignment:
Q  272 tcatttaaaagagttctagccatttcttgcaatgttatatttttctttttaacaacttcattttgttgaggtgttcttggacaggaaaa 360  Q
    |||||||||| |||||| |||||||||||||| ||  |||||||  ||| ||||||| ||||||||||||| ||||| |||||||||||    
T  115699 tcatttaaaatagttcttgccatttcttgcaaagtcctattttttctttcaacaactccattttgttgaggagttctaggacaggaaaa 115611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 201 - 360
Target Start/End: Complemental strand, 6696242 - 6696082
Alignment:
Q  201 atagaaactctactcagaatatagcaagaaatgttaatggtttctgtcaaaaagta-ttttcaacgttggcctcatttaaaagagttctagccatttctt 299  Q
    |||||||||||| ||| ||| || |||||  ||||||||| ||||| | ||||||| |||||||| || |  |||||||| |  ||||| ||||||||||    
T  6696242 atagaaactctattcaaaatgtaacaagatgtgttaatggcttctgcccaaaagtaattttcaacatttgattcatttaacattgttcttgccatttctt 6696143  T
Q  300 gcaatgttatatttttctttttaacaacttcattttgttgaggtgttcttggacaggaaaa 360  Q
    |||| ||| |||||||  ||| ||||||| |||||||||| || ||||||| ||| |||||    
T  6696142 gcaaggttctattttttctttcaacaactccattttgttgtggagttcttgcacaagaaaa 6696082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 52 - 158
Target Start/End: Complemental strand, 17133124 - 17133018
Alignment:
Q  52 gattcccttgtctgaccttgagtcaaatttttcaaggttgtccttatgattaaggatataacaataacacccaaaaatatggcaataagaaatatttgat 151  Q
    ||||||||||| || | || ||||||  ||| ||| |||||| |||||| ||||||||||  ||||| |||  ||||||||| ||||||||||||||| |    
T  17133124 gattcccttgtttgcctttaagtcaagctttccaatgttgtcattatgaataaggatatagaaataataccagaaaatatggtaataagaaatatttggt 17133025  T
Q  152 tttctat 158  Q
    |||||||    
T  17133024 tttctat 17133018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 107 - 360
Target Start/End: Original strand, 54696048 - 54696301
Alignment:
Q  107 atataacaataacacccaaaaatatggcaataagaaatatttgattttctatttttccatagttcgattgaagttttgttaaaaattctttttaatagaa 206  Q
    |||||||||||||| |||||||||||  |||| || || || | |||| |||||||||| ||||||  ||  |||||||| |||||| ||| |||| |||    
T  54696048 atataacaataacatccaaaaatatgaaaatatgagatgttaggttttatatttttccagagttcgtatggggttttgtttaaaatt-tttctaattgaa 54696146  T
Q  207 actctactcagaatatagcaagaaatgttaatggtttctgtcaaaaagtatttt-caacgttggcctcatttaaaagagttctagccatttcttgcaatg 305  Q
    || ||  | |  |||||||||||| | || |||| ||| | | ||||||||||| | || || |  |||||||| |  ||||| ||||||||||| | ||    
T  54696147 accctgtttatgatatagcaagaagtatttatggcttcagcccaaaagtatttttctacatttgattcatttaacattgttcttgccatttcttggagtg 54696246  T
Q  306 ttatatttttctttttaacaacttcattttgttgaggtgttcttggacaggaaaa 360  Q
    || |||||||  ||| ||||||| |||||||||| || ||||||| ||| |||||    
T  54696247 ttctattttttctttcaacaactccattttgttgtggagttcttgcacatgaaaa 54696301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 272 - 357
Target Start/End: Complemental strand, 14935849 - 14935764
Alignment:
Q  272 tcatttaaaagagttctagccatttcttgcaatgttatatttttctttttaacaacttcattttgttgaggtgttcttggacagga 357  Q
    |||||||||| |||||| ||||||||||| | |||| |||||||| |||  |||||  |||| |||||||||||||| ||||||||    
T  14935849 tcatttaaaatagttcttgccatttcttgtagtgttctatttttcctttctacaacaccattctgttgaggtgttctaggacagga 14935764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 201 - 360
Target Start/End: Complemental strand, 16269080 - 16268920
Alignment:
Q  201 atagaaactctactcagaatatagcaagaaatgttaatggtttctgtcaaaaagtatt-ttcaacgttggcctcatttaaaagagttctagccatttctt 299  Q
    |||||||||||| ||| ||| || |||||  ||||||||| ||||| | ||||||| | |||||| || |  |||||||| |  ||||| ||||||||||    
T  16269080 atagaaactctattcaaaatgtaacaagatgtgttaatggcttctgcccaaaagtaatcttcaacatttgattcatttaacattgttcttgccatttctt 16268981  T
Q  300 gcaatgttatatttttctttttaacaacttcattttgttgaggtgttcttggacaggaaaa 360  Q
    |||| ||| | |||||  ||| ||||||| |||||||||| || ||||||| ||| |||||    
T  16268980 gcaaggttctgttttttctttcaacaactccattttgttgtggagttcttgcacaagaaaa 16268920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 204 - 360
Target Start/End: Complemental strand, 17155437 - 17155280
Alignment:
Q  204 gaaactctactcagaatatagcaagaaatgttaatggtttctgtcaaaaagtatt-ttcaacgttggcctcatttaaaagagttctagccatttcttgca 302  Q
    ||||||||| ||| ||| || |||||  ||||||||| ||||| | ||||||| | |||||| || |  |||||||| |  ||||| |||||||||||||    
T  17155437 gaaactctattcaaaatgtaacaagatgtgttaatggcttctgcccaaaagtaatcttcaacatttgattcatttaacattgttcttgccatttcttgca 17155338  T
Q  303 atgttatatttttctttttaacaacttcattttgttgaggtgttcttggacaggaaaa 360  Q
    | ||| |||||||  ||| ||||||| |||||||||| || ||| ||| ||| |||||    
T  17155337 aggttctattttttctttcaacaactccattttgttgtggagttgttgcacaagaaaa 17155280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 107 - 171
Target Start/End: Original strand, 18127209 - 18127273
Alignment:
Q  107 atataacaataacacccaaaaatatggcaataagaaatatttgattttctatttttccatagttc 171  Q
    |||||||||||||| |||||||| ||  |||| ||||| || | ||||||||||||||| |||||    
T  18127209 atataacaataacaaccaaaaatgtgaaaatatgaaatgttaggttttctatttttccagagttc 18127273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 201 - 360
Target Start/End: Complemental strand, 16158907 - 16158747
Alignment:
Q  201 atagaaactctactcagaatatagcaagaaatgttaatggtttctgtcaaaaagta-ttttcaacgttggcctcatttaaaagagttctagccatttctt 299  Q
    |||||||||||| ||| ||| || |||||  ||||||||| ||||| | ||||||| |||||||| || |  |||||||| |  ||||| ||||||||||    
T  16158907 atagaaactctattcaaaatgtaacaagatgtgttaatggcttctgcccaaaagtaattttcaacatttgattcatttaacattgttcttgccatttctt 16158808  T
Q  300 gcaatgttatatttttctttttaacaacttcattttgttgaggtgttcttggacaggaaaa 360  Q
    |||| ||| |||||||  ||| ||||||| |||||||||| || ||||||| ||| |||||    
T  16158807 gcaaggttctattttttctttcaacaactccattttgttgtggagttcttgcacaagaaaa 16158747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 219 - 360
Target Start/End: Complemental strand, 166882 - 166741
Alignment:
Q  219 atatagcaagaaatgttaatggtttctgtcaaaaagta-ttttcaacgttggcctcatttaaaagagttctagccatttcttgcaatgttatatttttct 317  Q
    |||||||||||| | || |||||||||| | |||| || |||||||| || |  |||||||||| |||||| ||||||||||| |||||  ||||||| |    
T  166882 atatagcaagaagtatttatggtttctgcccaaaaatacttttcaacatttgattcatttaaaatagttcttgccatttcttgtaatgtcttattttt-t 166784  T
Q  318 ttttaacaacttcattttgttgaggtgttcttggacaggaaaa 360  Q
    |||  |||||  ||||||||||||||||||| ||||| |||||    
T  166783 tttctacaacaccattttgttgaggtgttctaggacaagaaaa 166741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 2)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 272 - 360
Target Start/End: Complemental strand, 85372 - 85284
Alignment:
Q  272 tcatttaaaagagttctagccatttcttgcaatgttatatttttctttttaacaacttcattttgttgaggtgttcttggacaggaaaa 360  Q
    |||||||||| |||||| |||||||||||||| ||  |||||||  ||| ||||||| ||||||||||||| ||||| ||||| |||||    
T  85372 tcatttaaaatagttcttgccatttcttgcaaagtcctattttttctttcaacaactccattttgttgaggagttctaggacaagaaaa 85284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 107 - 360
Target Start/End: Original strand, 100562 - 100815
Alignment:
Q  107 atataacaataacacccaaaaatatggcaataagaaatatttgattttctatttttccatagttcgattgaagttttgttaaaaattctttttaatagaa 206  Q
    |||||||||||||| |||||||||||  |||| || || || | |||| |||||||||| ||||||  ||  |||||||| |||||| ||| |||| |||    
T  100562 atataacaataacatccaaaaatatgaaaatatgagatgttaggttttatatttttccagagttcgtatggggttttgtttaaaatt-tttctaattgaa 100660  T
Q  207 actctactcagaatatagcaagaaatgttaatggtttctgtcaaaaagtatttt-caacgttggcctcatttaaaagagttctagccatttcttgcaatg 305  Q
    || ||  | |  |||||||||||| | || |||| ||| | | ||||||||||| | || || |  |||||||| |  ||||| ||||||||||| | ||    
T  100661 accctgtttatgatatagcaagaagtatttatggcttcagcccaaaagtatttttctacatttgattcatttaacattgttcttgccatttcttggagtg 100760  T
Q  306 ttatatttttctttttaacaacttcattttgttgaggtgttcttggacaggaaaa 360  Q
    || |||||||  ||| ||||||| |||||||||| || ||||||| ||| |||||    
T  100761 ttctattttttctttcaacaactccattttgttgtggagttcttgcacatgaaaa 100815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 201 - 350
Target Start/End: Complemental strand, 149037 - 148887
Alignment:
Q  201 atagaaactctactcagaatatagcaagaaatgttaatggtttctgtcaaaaagta-ttttcaacgttggcctcatttaaaagagttctagccatttctt 299  Q
    ||||||||| || ||| ||| ||||||||  ||||||||| ||||| | |||| || |||||||| || |  |||||||| |  ||||||||||||||||    
T  149037 atagaaactttattcaaaatgtagcaagatgtgttaatggcttctgcccaaaaataattttcaacatttgattcatttaacatggttctagccatttctt 148938  T
Q  300 gcaatgttatatttttctttttaacaacttcattttgttgaggtgttcttg 350  Q
    | || ||| |||||||  |||||||||||  ||||||||| || |||||||    
T  148937 gtaaagttctattttttcttttaacaactctattttgttgtggagttcttg 148887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0611 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0611
Description:

Target: scaffold0611; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 201 - 360
Target Start/End: Complemental strand, 1973 - 1813
Alignment:
Q  201 atagaaactctactcagaatatagcaagaaatgttaatggtttctgtcaaaaagtatt-ttcaacgttggcctcatttaaaagagttctagccatttctt 299  Q
    |||||||||||| ||| ||| || |||||  ||||||||| ||||| | ||||||| | |||||| || |  |||||||| |  ||||| ||||||||||    
T  1973 atagaaactctattcaaaatgtaacaagatgtgttaatggcttctgcccaaaagtaatcttcaacatttgattcatttaacattgttcttgccatttctt 1874  T
Q  300 gcaatgttatatttttctttttaacaacttcattttgttgaggtgttcttggacaggaaaa 360  Q
    |||| ||| | |||||  ||| ||||||| |||||||||| || ||||||| ||| |||||    
T  1873 gcaaggttctgttttttctttcaacaactccattttgttgtggagttcttgcacaagaaaa 1813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0500 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0500
Description:

Target: scaffold0500; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 272 - 360
Target Start/End: Complemental strand, 9494 - 9406
Alignment:
Q  272 tcatttaaaagagttctagccatttcttgcaatgttatatttttctttttaacaacttcattttgttgaggtgttcttggacaggaaaa 360  Q
    |||||||||| |||||| |||||||||||||| ||| |||||||  ||| ||||||| ||||||||| ||  ||||| ||||| |||||    
T  9494 tcatttaaaatagttcttgccatttcttgcaaagttctattttttctttcaacaactccattttgttcagaagttctaggacaagaaaa 9406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 257 - 360
Target Start/End: Complemental strand, 18554 - 18451
Alignment:
Q  257 ttttcaacgttggcctcatttaaaagagttctagccatttcttgcaatgttatatttttctttttaacaacttcattttgttgaggtgttcttggacagg 356  Q
    |||||||| || | ||||||||||| |||||| ||||||||||  |||||  |||||||  |||  |||||  ||||||||||||||||||| ||||| |    
T  18554 ttttcaacatttgactcatttaaaatagttcttgccatttcttataatgtcctattttttctttctacaacaccattttgttgaggtgttctaggacaag 18455  T
Q  357 aaaa 360  Q
    ||||    
T  18454 aaaa 18451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 284 - 357
Target Start/End: Original strand, 84989 - 85062
Alignment:
Q  284 gttctagccatttcttgcaatgttatatttttctttttaacaacttcattttgttgaggtgttcttggacagga 357  Q
    ||||| |||||||||||||| ||| |||||||  ||| ||||||| |||||||||| || ||||||| ||||||    
T  84989 gttcttgccatttcttgcaaggttctattttttctttcaacaactccattttgttgtggagttcttgcacagga 85062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0142 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0142
Description:

Target: scaffold0142; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 287 - 360
Target Start/End: Original strand, 33309 - 33382
Alignment:
Q  287 ctagccatttcttgcaatgttatatttttctttttaacaacttcattttgttgaggtgttcttggacaggaaaa 360  Q
    |||| ||||||| |||| ||| ||||||||  || ||||||||||||||||||||| ||||||| ||| |||||    
T  33309 ctagacatttctcgcaaggttctatttttccattcaacaacttcattttgttgaggagttcttgcacatgaaaa 33382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0141 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0141
Description:

Target: scaffold0141; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 284 - 357
Target Start/End: Complemental strand, 29823 - 29750
Alignment:
Q  284 gttctagccatttcttgcaatgttatatttttctttttaacaacttcattttgttgaggtgttcttggacagga 357  Q
    |||||||||||||||||||| ||  |||||||  ||| ||||||| |||||||||| || ||||||| ||||||    
T  29823 gttctagccatttcttgcaaagtcctattttttctttcaacaactccattttgttgtggagttcttgcacagga 29750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0313 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0313
Description:

Target: scaffold0313; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 204 - 350
Target Start/End: Complemental strand, 13578 - 13431
Alignment:
Q  204 gaaactctactcagaatatagcaagaaatgttaatggtttctgtcaaaaagtatt-ttcaacgttggcctcatttaaaagagttctagccatttcttgca 302  Q
    ||||||||| ||| ||| || |||||  ||||||||| ||||| | |||| || | |||||| || |  |||||||| |  ||||||||||||||||| |    
T  13578 gaaactctattcaaaatgtaacaagatgtgttaatggcttctgcccaaaaataatcttcaacatttgattcatttaacatggttctagccatttcttgta 13479  T
Q  303 atgttatatttttctttttaacaacttcattttgttgaggtgttcttg 350  Q
    | ||| |||||||  ||| ||||||| |||||||||| || |||||||    
T  13478 aagttctattttttctttcaacaactccattttgttgtggagttcttg 13431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0058 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0058
Description:

Target: scaffold0058; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 201 - 303
Target Start/End: Original strand, 62691 - 62794
Alignment:
Q  201 atagaaactctactcagaatatagcaagaaatgttaatggtttctgtcaaaaagt-attttcaacgttggcctcatttaaaagagttctagccatttctt 299  Q
    |||||||||||| ||| ||| || |||||  ||||||||| ||||| | |||||| ||||||||| || |  |||||||| |  ||||||||||||||||    
T  62691 atagaaactctattcaaaatgtaacaagatgtgttaatggcttctgcccaaaagtaattttcaacatttgattcatttaacattgttctagccatttctt 62790  T
Q  300 gcaa 303  Q
    ||||    
T  62791 gcaa 62794  T

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