View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14045_low_10 (Length: 275)
Name: NF14045_low_10
Description: NF14045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14045_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 67 - 259
Target Start/End: Original strand, 39881383 - 39881575
Alignment:
| Q |
67 |
cagccaaaacctttgactggcctagataccggaggaggttctcttgcctctcccacaattttcattatctcgtccacactttgaatagaaaagcttgggt |
166 |
Q |
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| T |
39881383 |
cagccaaaacctttgaccggcctagataccggaggaggttctcttgcctctcccacaattttcattatctcgtccacactttgaatagaaaagcttgggt |
39881482 |
T |
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| Q |
167 |
tgcctctctggtaatacgcagcttgggctgattcagttaactcccttggaagattctttaaaaaccatggatggttcttgatttccttgagag |
259 |
Q |
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| T |
39881483 |
tgcctctctggtaatacgcagcttgggctgattcagttagctcccttggaagattctttaaaaaccatggatggttcttgatttccttgagag |
39881575 |
T |
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Target: chr3 (Bit Score: 104; Significance: 6e-52; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 67 - 254
Target Start/End: Original strand, 44630843 - 44631030
Alignment:
| Q |
67 |
cagccaaaacctttgactggcctagataccggaggaggttctcttgcctctcccacaattttcattatctcgtccacactttgaatagaaaagcttgggt |
166 |
Q |
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||||||||||||||||| ||||||||||| ||||| || | |||||||||||||||||||||||||| |||||||||||||| | | ||||||||| | |
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| T |
44630843 |
cagccaaaacctttgacgggcctagatactggaggcgggtttcttgcctctcccacaattttcattacatcgtccacactttgtagatgaaagcttggat |
44630942 |
T |
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| Q |
167 |
tgcctctctggtaatacgcagcttgggctgattcagttaactcccttggaagattctttaaaaaccatggatggttcttgatttcctt |
254 |
Q |
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| T |
44630943 |
tttctctctggtaatacatagcttgagctgactctgttagctcccttggaagattctttaaaaaccatggatggctcttgatttcctt |
44631030 |
T |
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