View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14045_low_3 (Length: 597)

Name: NF14045_low_3
Description: NF14045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14045_low_3
NF14045_low_3
[»] scaffold0591 (3 HSPs)
scaffold0591 (41-357)||(6983-7306)
scaffold0591 (428-587)||(7413-7573)
scaffold0591 (369-406)||(7354-7391)
[»] chr8 (11 HSPs)
chr8 (42-290)||(28642493-28642751)
chr8 (41-279)||(28651453-28651701)
chr8 (282-574)||(28646386-28646682)
chr8 (282-574)||(28650970-28651266)
chr8 (62-357)||(28624782-28625087)
chr8 (130-279)||(28646869-28647025)
chr8 (62-149)||(28698921-28699008)
chr8 (62-141)||(28738502-28738581)
chr8 (67-151)||(28709116-28709200)
chr8 (67-151)||(28716473-28716557)
chr8 (67-151)||(28724521-28724605)
[»] chr7 (1 HSPs)
chr7 (69-142)||(49109433-49109506)


Alignment Details
Target: scaffold0591 (Bit Score: 241; Significance: 1e-133; HSPs: 3)
Name: scaffold0591
Description:

Target: scaffold0591; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 41 - 357
Target Start/End: Original strand, 6983 - 7306
Alignment:
Q  41 catctaatcgaaaaaacttggtgttggtaggagttgaacacgttggtggcgatatgtttgaaagtgtgcctaaaggagaagccattcttatgaaggtgag 140  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  6983 catctaatcgaaaaaacttggtgttggcaggagttgaacacgttggtggcgatatgtttgaaagtgtgcctaaaggagatgccattcttatgaaggtgag 7082  T
Q  141 tgaatatgaatatgaattgttgttcat-------tggataattagaagaacaagcaagctctttttcaaacnnnnnnntgttgaannnnnnnnaaagtcc 233  Q
    |||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||       |||||||        ||||| |    
T  7083 tgaatatgaatatgaattgttgttcatggtatattggataattagaagaacaagcaagctctttttcaaacaaaaaaatgttgaatttttttaaaagtgc 7182  T
Q  234 tgaattagatgcaatagaataagccaatcatttatacaacaaaaaagaaataaaagaatatgccagtcaattgataaccctcaatccaaaatggtcaggc 333  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7183 tgaattagatgcaatagaataagccaatcatttatacaacaaaaaagaaataaaagaatatgccagtcaattgataaccctcaatccaaaatggtcaggc 7282  T
Q  334 ttatcaacaacatatttggctaaa 357  Q
    ||||||||||||||||||||||||    
T  7283 ttatcaacaacatatttggctaaa 7306  T

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Target: scaffold0591; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 428 - 587
Target Start/End: Original strand, 7413 - 7573
Alignment:
Q  428 caaccctgtcgttcttaagaatcattctcttccccattcaatcaaattgaatgnnnnnnn-caccgtttactatatttacctatcaacataggatctggt 526  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||| |||||||||||||||| ||||| |||||| |    
T  7413 caaccctgtcgttcttaagaatcattctcttccccattcaatcaaattgaatgggaagaaacaccgttaactatatttacctatccacatacgatctgtt 7512  T
Q  527 ctagataaacaaatccatatatgaatgtggttttaaagaaatttgtaggggtgaaagtata 587  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7513 ctagataaacaaatccatatatgaatgtggttttaaagaaatttgtaggggtgaaagtata 7573  T

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Target: scaffold0591; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 369 - 406
Target Start/End: Original strand, 7354 - 7391
Alignment:
Q  369 ggatatttggctaaatgttagattgtagtgtttctaaa 406  Q
    ||||||||||||||||||||||||||||||||||||||    
T  7354 ggatatttggctaaatgttagattgtagtgtttctaaa 7391  T

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Target: chr8 (Bit Score: 122; Significance: 3e-62; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 42 - 290
Target Start/End: Complemental strand, 28642751 - 28642493
Alignment:
Q  42 atctaatcgaaaaaact---tggtgttggtaggagttgaacacgttggtggcgatatgtttgaaagtgtgcctaaaggagaagccattcttatgaaggtg 138  Q
    |||||||||||||||||   ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| | |||| | |||||||||    
T  28642751 atctaatcgaaaaaactacttggtgttggcaggagttgaacacgttggtggcgatatgtttgaaagtgtgcctaaagtagatgtcattttaatgaaggtg 28642652  T
Q  139 agtgaatatgaatatgaattgttgttc-------attggataattagaagaacaagcaagctctttttcaaacnnnnnnntgttgaannnnnnnnaaagt 231  Q
    |||||||||||||||||||||||||||       |||||||||| || ||||||| |||||||||||||||||       |||||||        |||||    
T  28642651 agtgaatatgaatatgaattgttgttcatggtatattggataataaggagaacaaacaagctctttttcaaacaaaaaaatgttgaatttttttaaaagt 28642552  T
Q  232 cctgaattagatgcaatagaataagccaatcatttatacaacaaaaaagaaataaaaga 290  Q
      ||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||    
T  28642551 gttgaattagatgcaatagaaaaagtcaatcatttatacaacaaaaaagaaataaaaga 28642493  T

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Target: chr8; HSP #2
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 41 - 279
Target Start/End: Complemental strand, 28651701 - 28651453
Alignment:
Q  41 catctaatcgaaaaaact---tggtgttggtaggagttgaacacgttggtggcgatatgtttgaaagtgtgcctaaaggagaagccattcttatgaaggt 137  Q
    ||||||||||||||||||   ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| | ||||||||    
T  28651701 catctaatcgaaaaaactacttggtgttggcaggagttgaacacgttggtggcgatatgtttgaaagtgtgcctaaaggagatgtcattttaatgaaggt 28651602  T
Q  138 gagtgaatatgaatatgaattgttgttc-------attggataattagaagaacaagcaagctctttttcaaacnnnnnnntgttgaannnnnnnnaaag 230  Q
    ||||||||||||||||||||||||||||       |||||||||| || ||||||| |||||||||||||||||       |||||||        ||||    
T  28651601 gagtgaatatgaatatgaattgttgttcatggtatattggataataaggagaacaaacaagctctttttcaaacaaaaaaatgttgaaattttttaaaag 28651502  T
Q  231 tcctgaattagatgcaatagaataagccaatcatttatacaacaaaaaa 279  Q
    |  ||||||||||||||||||| ||||||||||||||||||||||||||    
T  28651501 tgttgaattagatgcaatagaaaaagccaatcatttatacaacaaaaaa 28651453  T

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Target: chr8; HSP #3
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 282 - 574
Target Start/End: Complemental strand, 28646682 - 28646386
Alignment:
Q  282 aataaaagaatatgccagtcaattgataaccctcaatccaaaatggtcaggcttatcaacaacatatttggctaa-----annnnnnnnnagggatattt 376  Q
    |||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||     |         ||||||||||    
T  28646682 aataaaagaatatgtcagccaattgataaccctcaatccaaaatggtcaggcttatcaacaacatatttggctaaatattatttttttgtagggatattt 28646583  T
Q  377 ggctaaatgttagattgtagtgtttctaaannnnnnnnnnnnnnnnnnnnncaaccctgtcgttcttaagaatcattctcttccccattcaatcaaattg 476  Q
    ||||||||||||||||||||||||||||||                     |||||||||||||||| |||| || ||||||| ||||||||||||||||    
T  28646582 ggctaaatgttagattgtagtgtttctaaattttttgagagtttctttttccaaccctgtcgttctttagaaccactctcttctccattcaatcaaattg 28646483  T
Q  477 aatgnnnnnnncaccgtttactatatttacctatcaacataggatctggtctagataaacaaatccatatatgaatgtggttttaaagaaatttgtag 574  Q
    ||||        ||||||||| ||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28646482 aatgggaaaaataccgtttac-atatttacctatccacatatgatcttgtctagataaacaaatccatatatgaatgtggttttaaagaaatttgtag 28646386  T

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Target: chr8; HSP #4
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 282 - 574
Target Start/End: Complemental strand, 28651266 - 28650970
Alignment:
Q  282 aataaaagaatatgccagtcaattgataaccctcaatccaaaatggtcaggcttatcaacaacatatttggctaa-----annnnnnnnnagggatattt 376  Q
    |||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||     |         ||||||||||    
T  28651266 aataaaagaatatgtcagccaattgataaccctcaatccaaaatggtcaggcttatcaacaacatatttggctaaatattatttttttgtagggatattt 28651167  T
Q  377 ggctaaatgttagattgtagtgtttctaaannnnnnnnnnnnnnnnnnnnncaaccctgtcgttcttaagaatcattctcttccccattcaatcaaattg 476  Q
    ||||||||||||||||||||||||||||||                     |||||||||||||||| |||| || ||||||| ||||||||||||||||    
T  28651166 ggctaaatgttagattgtagtgtttctaaattttttgagagtttctttttccaaccctgtcgttctttagaaccactctcttctccattcaatcaaattg 28651067  T
Q  477 aatgnnnnnnncaccgtttactatatttacctatcaacataggatctggtctagataaacaaatccatatatgaatgtggttttaaagaaatttgtag 574  Q
    ||||        ||||||||| ||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28651066 aatgggaaaaataccgtttac-atatttacctatccacatatgatcttgtctagataaacaaatccatatatgaatgtggttttaaagaaatttgtag 28650970  T

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Target: chr8; HSP #5
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 62 - 357
Target Start/End: Complemental strand, 28625087 - 28624782
Alignment:
Q  62 tgttggtaggagttgaacacgttggtggcgatatgtttgaaagtgtgcctaaaggagaagccattcttatgaaggtgagtgaatatgaatatgaattgtt 161  Q
    |||||| |||||||||||||||||| || ||||||||||||||||||||||||||||| |||||  |||||||||||||||||||||||||||| || ||    
T  28625087 tgttggcaggagttgaacacgttgggggagatatgtttgaaagtgtgcctaaaggagatgccatctttatgaaggtgagtgaatatgaatatgatttttt 28624988  T
Q  162 gtt-------------cattggataattagaagaacaagcaagctctttttcaaacnnnnnnntgttgaannnnnnnnaaagtcctgaattagatgcaat 248  Q
     ||              | ||||||| ||| ||||||| |||||||||||||||||       ||  |||         ||||  |||||||||| ||||    
T  28624987 tttttttttttttataaactggataactaggagaacaaacaagctctttttcaaacaaaaacttgaagaattattttagaagtggtgaattagatacaat 28624888  T
Q  249 agaataagccaatcatttatacaacaaaaaagaaataaaagaatatgccagtcaattgataaccctcaatccaaa-atggtcaggcttatcaacaacata 347  Q
     ||||||||||||||||||||||  |||||  ||||||||||||| ||||  | ||||||| ||||| ||||||| |||||||||| |||||||||||||    
T  28624887 tgaataagccaatcatttataca--aaaaataaaataaaagaataagcca--ccattgatagccctccatccaaatatggtcaggcatatcaacaacata 28624792  T
Q  348 tttggctaaa 357  Q
    ||||||||||    
T  28624791 tttggctaaa 28624782  T

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Target: chr8; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 130 - 279
Target Start/End: Complemental strand, 28647025 - 28646869
Alignment:
Q  130 atgaaggtgagtgaatatgaatatgaattgttgttcat-------tggataattagaagaacaagcaagctctttttcaaacnnnnnnntgttgaannnn 222  Q
    ||||||||||||||||||||||||||||||||||||||       |||||||| || ||||||| |||||||||||||||||       |||||||        
T  28647025 atgaaggtgagtgaatatgaatatgaattgttgttcatggtatattggataataaggagaacaaacaagctctttttcaaacaaaaaaatgttgaaattt 28646926  T
Q  223 nnnnaaagtcctgaattagatgcaatagaataagccaatcatttatacaacaaaaaa 279  Q
        |||||  ||||||||||||||||||| ||||||||||||||||||||||||||    
T  28646925 tttaaaagtgttgaattagatgcaatagaaaaagccaatcatttatacaacaaaaaa 28646869  T

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Target: chr8; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 62 - 149
Target Start/End: Complemental strand, 28699008 - 28698921
Alignment:
Q  62 tgttggtaggagttgaacacgttggtggcgatatgtttgaaagtgtgcctaaaggagaagccattcttatgaaggtgagtgaatatga 149  Q
    ||||||||||||||||||||||||  || ||||||||| ||||||| ||||||||||| |||||  |||||||||| |||||||||||    
T  28699008 tgttggtaggagttgaacacgttgacggagatatgtttaaaagtgttcctaaaggagatgccatctttatgaaggttagtgaatatga 28698921  T

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Target: chr8; HSP #8
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 62 - 141
Target Start/End: Complemental strand, 28738581 - 28738502
Alignment:
Q  62 tgttggtaggagttgaacacgttggtggcgatatgtttgaaagtgtgcctaaaggagaagccattcttatgaaggtgagt 141  Q
    |||||| |||||| ||||||||| |||| |||||||||||||||||||||| |||||| |||||  || |||||||||||    
T  28738581 tgttggcaggagtcgaacacgttagtggagatatgtttgaaagtgtgcctagaggagatgccatctttttgaaggtgagt 28738502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 67 - 151
Target Start/End: Complemental strand, 28709200 - 28709116
Alignment:
Q  67 gtaggagttgaacacgttggtggcgatatgtttgaaagtgtgcctaaaggagaagccattcttatgaaggtgagtgaatatgaat 151  Q
    |||||||| |||||| | || || |||||||||||||| || || |||| ||| |||||  |||||||||||||| |||||||||    
T  28709200 gtaggagtcgaacacatcggaggagatatgtttgaaagcgtaccaaaagcagatgccatctttatgaaggtgagtaaatatgaat 28709116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 67 - 151
Target Start/End: Complemental strand, 28716557 - 28716473
Alignment:
Q  67 gtaggagttgaacacgttggtggcgatatgtttgaaagtgtgcctaaaggagaagccattcttatgaaggtgagtgaatatgaat 151  Q
    |||||||| |||||| | || || |||||||||||||| || || |||| ||| |||||  |||||||||||||| |||||||||    
T  28716557 gtaggagtcgaacacatcggaggagatatgtttgaaagcgtaccaaaagcagatgccatctttatgaaggtgagtaaatatgaat 28716473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 67 - 151
Target Start/End: Complemental strand, 28724605 - 28724521
Alignment:
Q  67 gtaggagttgaacacgttggtggcgatatgtttgaaagtgtgcctaaaggagaagccattcttatgaaggtgagtgaatatgaat 151  Q
    |||||||| |||||| | || || ||||||||| ||||||| || |||| ||| |||||  |||||||||| |||||||||||||    
T  28724605 gtaggagtcgaacacatcggaggagatatgtttaaaagtgtaccaaaagcagatgccatctttatgaaggtcagtgaatatgaat 28724521  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 69 - 142
Target Start/End: Complemental strand, 49109506 - 49109433
Alignment:
Q  69 aggagttgaacacgttggtggcgatatgtttgaaagtgtgcctaaaggagaagccattcttatgaaggtgagtg 142  Q
    |||||| ||||| ||||| || ||||||||||||| ||||||||||| ||| |||||  |||||||||||||||    
T  49109506 aggagtcgaacatgttggcggagatatgtttgaaactgtgcctaaagcagatgccatctttatgaaggtgagtg 49109433  T

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